HEADER HYDROLASE, CARBOHYDRATE 13-DEC-12 3W38 TITLE SUGAR BEET ALPHA-GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MALTASE; COMPND 5 EC: 3.2.1.20 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BETA VULGARIS; SOURCE 3 ORGANISM_COMMON: BEET; SOURCE 4 ORGANISM_TAXID: 161934; SOURCE 5 STRAIN: CV. ABEND; SOURCE 6 OTHER_DETAILS: SEEDS KEYWDS ALPHA-GLUCOSIDASE, GLYCOSIDE HYDROLASE FAMILY 31, (BETA/ALPHA)8- KEYWDS 2 BARREL, HYDROLASE, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR T.TAGAMI,K.YAMASHITA,M.OKUYAMA,H.MORI,M.YAO,A.KIMURA REVDAT 5 29-JUL-20 3W38 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 30-JUL-14 3W38 1 REMARK REVDAT 3 17-JUL-13 3W38 1 JRNL REVDAT 2 12-JUN-13 3W38 1 JRNL REVDAT 1 29-MAY-13 3W38 0 JRNL AUTH T.TAGAMI,K.YAMASHITA,M.OKUYAMA,H.MORI,M.YAO,A.KIMURA JRNL TITL MOLECULAR BASIS FOR THE RECOGNITION OF LONG-CHAIN SUBSTRATES JRNL TITL 2 BY PLANT & ALPHA-GLUCOSIDASE JRNL REF J.BIOL.CHEM. V. 288 19296 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23687304 JRNL DOI 10.1074/JBC.M113.465211 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 21842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1090 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1295 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6583 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.418 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.525 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6840 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4598 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9328 ; 1.765 ; 1.955 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11118 ; 3.175 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 823 ; 6.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 319 ;34.894 ;23.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1047 ;13.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;16.912 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7600 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1491 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3W38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21842 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 43.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM AMMONIUM SULFATE, 50MM SODIUM REMARK 280 ACETATE BUFFER, 18% PEG MONOMETHYLETHER 2000, PH 4.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.76700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.82550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.82550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.76700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 TYR A 9 REMARK 465 ILE A 10 REMARK 465 CYS A 11 REMARK 465 ALA A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 VAL A 16 REMARK 465 VAL A 17 REMARK 465 LEU A 18 REMARK 465 PRO A 19 REMARK 465 LEU A 20 REMARK 465 VAL A 21 REMARK 465 LEU A 22 REMARK 465 CYS A 23 REMARK 465 MET A 24 REMARK 465 VAL A 25 REMARK 465 VAL A 26 REMARK 465 GLU A 27 REMARK 465 GLY A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 LYS A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ASN A 36 REMARK 465 GLN A 37 REMARK 465 GLY A 38 REMARK 465 SER A 119 REMARK 465 PRO A 120 REMARK 465 PRO A 121 REMARK 465 PRO A 122 REMARK 465 LEU A 123 REMARK 465 SER A 124 REMARK 465 SER A 125 REMARK 465 LEU A 126 REMARK 465 GLN A 127 REMARK 465 HIS A 128 REMARK 465 LEU A 129 REMARK 465 PRO A 130 REMARK 465 LYS A 131 REMARK 465 PRO A 132 REMARK 465 ILE A 133 REMARK 465 PRO A 134 REMARK 465 GLN A 135 REMARK 465 ASN A 136 REMARK 465 GLN A 137 REMARK 465 GLU A 859 REMARK 465 TYR A 860 REMARK 465 THR A 861 REMARK 465 VAL A 862 REMARK 465 GLN A 863 REMARK 465 LYS A 864 REMARK 465 ASP A 865 REMARK 465 ALA A 866 REMARK 465 GLY A 867 REMARK 465 ALA A 868 REMARK 465 ILE A 869 REMARK 465 LYS A 870 REMARK 465 ILE A 871 REMARK 465 LYS A 872 REMARK 465 GLY A 873 REMARK 465 LEU A 874 REMARK 465 GLY A 875 REMARK 465 LEU A 876 REMARK 465 ARG A 877 REMARK 465 THR A 878 REMARK 465 SER A 879 REMARK 465 SER A 880 REMARK 465 HIS A 881 REMARK 465 ASN A 882 REMARK 465 GLN A 883 REMARK 465 GLY A 884 REMARK 465 GLY A 910 REMARK 465 ALA A 911 REMARK 465 THR A 912 REMARK 465 ARG A 913 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 796 OE1 GLU A 800 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 54 -160.91 71.10 REMARK 500 SER A 55 -175.51 77.76 REMARK 500 ALA A 176 37.91 -96.96 REMARK 500 ASN A 223 67.14 64.09 REMARK 500 TRP A 229 115.06 -164.62 REMARK 500 ASP A 239 -33.63 80.00 REMARK 500 LEU A 242 -149.59 -108.16 REMARK 500 PRO A 247 48.00 -81.01 REMARK 500 TYR A 515 133.26 -38.06 REMARK 500 MET A 591 72.87 -116.82 REMARK 500 CYS A 599 -8.48 81.22 REMARK 500 GLU A 603 151.21 81.91 REMARK 500 ASN A 728 97.48 -165.72 REMARK 500 ARG A 840 33.71 -95.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W37 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARBOSE (AC4) REMARK 900 RELATED ID: 3WEL RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOTRIOSE (AC5) REMARK 900 RELATED ID: 3WEM RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOTETRAOSE (AC6) REMARK 900 RELATED ID: 3WEN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOPENTAOSE (AC7) REMARK 900 RELATED ID: 3WEO RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH ACARVIOSYL-MALTOHEXAOSE (AC8) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE GENEBANK ACCESSION NUMBER IS AB699590 FOR REMARK 999 THIS SEQUENCE. DBREF 3W38 A 1 913 PDB 3W38 3W38 1 913 SEQRES 1 A 913 MET GLU ARG SER LYS LEU PRO ARG TYR ILE CYS ALA THR SEQRES 2 A 913 LEU ALA VAL VAL LEU PRO LEU VAL LEU CYS MET VAL VAL SEQRES 3 A 913 GLU GLY ALA THR THR SER LYS ASN ASP ASN GLN GLY GLU SEQRES 4 A 913 ALA ILE GLY TYR GLY TYR GLN VAL LYS ASN ALA LYS VAL SEQRES 5 A 913 ASP ASN SER THR GLY LYS SER LEU THR ALA LEU LEU GLN SEQRES 6 A 913 LEU ILE ARG ASN SER PRO VAL TYR GLY PRO ASP ILE GLN SEQRES 7 A 913 PHE LEU SER PHE THR ALA SER PHE GLU GLU ASP ASP THR SEQRES 8 A 913 LEU ARG ILE ARG ILE THR ASP ALA ASN ASN ARG ARG TRP SEQRES 9 A 913 GLU ILE PRO ASN GLU VAL LEU PRO ARG PRO PRO PRO PRO SEQRES 10 A 913 PRO SER PRO PRO PRO LEU SER SER LEU GLN HIS LEU PRO SEQRES 11 A 913 LYS PRO ILE PRO GLN ASN GLN PRO THR THR THR VAL LEU SEQRES 12 A 913 SER HIS PRO HIS SER ASP LEU VAL PHE THR LEU PHE HIS SEQRES 13 A 913 THR THR PRO PHE GLY PHE THR ILE TYR ARG LYS SER THR SEQRES 14 A 913 HIS ASP VAL LEU PHE ASP ALA THR PRO ILE PRO SER ASN SEQRES 15 A 913 PRO THR THR PHE LEU ILE TYR LYS ASP GLN TYR LEU GLN SEQRES 16 A 913 LEU SER SER SER LEU PRO ALA GLN GLN ALA HIS LEU TYR SEQRES 17 A 913 GLY LEU GLY GLU HIS THR LYS PRO THR PHE GLN LEU ALA SEQRES 18 A 913 HIS ASN GLN ILE LEU THR LEU TRP ASN ALA ASP ILE ALA SEQRES 19 A 913 SER PHE ASN ARG ASP LEU ASN LEU TYR GLY SER HIS PRO SEQRES 20 A 913 PHE TYR MET ASP VAL ARG SER SER PRO MET VAL GLY SER SEQRES 21 A 913 THR HIS GLY VAL PHE LEU LEU ASN SER ASN GLY MET ASP SEQRES 22 A 913 VAL GLU TYR THR GLY ASP ARG ILE THR TYR LYS VAL ILE SEQRES 23 A 913 GLY GLY ILE ILE ASP LEU TYR ILE PHE ALA GLY ARG THR SEQRES 24 A 913 PRO GLU MET VAL LEU ASP GLN TYR THR LYS LEU ILE GLY SEQRES 25 A 913 ARG PRO ALA PRO MET PRO TYR TRP ALA PHE GLY PHE HIS SEQRES 26 A 913 GLN CYS ARG TRP GLY TYR ARG ASP VAL ASN GLU ILE GLU SEQRES 27 A 913 THR VAL VAL ASP LYS TYR ALA GLU ALA ARG ILE PRO LEU SEQRES 28 A 913 GLU VAL MET TRP THR ASP ILE ASP TYR MET ASP ALA PHE SEQRES 29 A 913 LYS ASP PHE THR LEU ASP PRO VAL HIS PHE PRO LEU ASP SEQRES 30 A 913 LYS MET GLN GLN PHE VAL THR LYS LEU HIS ARG ASN GLY SEQRES 31 A 913 GLN ARG TYR VAL PRO ILE LEU ASP PRO GLY ILE ASN THR SEQRES 32 A 913 ASN LYS SER TYR GLY THR PHE ILE ARG GLY MET GLN SER SEQRES 33 A 913 ASN VAL PHE ILE LYS ARG ASP GLY ASN PRO TYR LEU GLY SEQRES 34 A 913 SER VAL TRP PRO GLY PRO VAL TYR TYR PRO ASP PHE LEU SEQRES 35 A 913 ASP PRO ALA ALA ARG SER PHE TRP VAL ASP GLU ILE LYS SEQRES 36 A 913 ARG PHE ARG ASP ILE LEU PRO ILE ASP GLY ILE TRP ILE SEQRES 37 A 913 ASP MET ASN GLU ALA SER ASN PHE ILE THR SER ALA PRO SEQRES 38 A 913 THR PRO GLY SER THR LEU ASP ASN PRO PRO TYR LYS ILE SEQRES 39 A 913 ASN ASN SER GLY GLY ARG VAL PRO ILE ASN SER LYS THR SEQRES 40 A 913 ILE PRO ALA THR ALA MET HIS TYR GLY ASN VAL THR GLU SEQRES 41 A 913 TYR ASN ALA HIS ASN LEU TYR GLY PHE LEU GLU SER GLN SEQRES 42 A 913 ALA THR ARG GLU ALA LEU VAL ARG THR SER ASN GLU ARG SEQRES 43 A 913 PRO PHE LEU LEU SER ARG SER THR PHE ALA GLY SER GLY SEQRES 44 A 913 LYS TYR THR ALA HIS TRP THR GLY ASP ASN ALA ALA ARG SEQRES 45 A 913 TRP ASP ASP LEU GLN TYR SER ILE PRO THR MET LEU ASN SEQRES 46 A 913 PHE GLY LEU PHE GLY MET PRO MET ILE GLY ALA ASP ILE SEQRES 47 A 913 CYS GLY PHE ALA GLU SER THR THR GLU GLU LEU CYS ARG SEQRES 48 A 913 ARG TRP ILE GLN LEU GLY ALA PHE TYR PRO PHE SER ARG SEQRES 49 A 913 ASP HIS SER ALA ARG ASP THR THR HIS GLN GLU LEU TYR SEQRES 50 A 913 LEU TRP GLU SER VAL ALA ALA SER ALA ARG THR VAL LEU SEQRES 51 A 913 GLY LEU ARG TYR GLN LEU LEU PRO TYR TYR TYR THR LEU SEQRES 52 A 913 MET TYR ASP ALA ASN LEU ARG GLY ILE PRO ILE ALA ARG SEQRES 53 A 913 PRO LEU PHE PHE THR PHE PRO ASP ASP VAL ALA THR TYR SEQRES 54 A 913 GLY ILE SER SER GLN PHE LEU ILE GLY ARG GLY ILE MET SEQRES 55 A 913 VAL SER PRO VAL LEU GLN PRO GLY ALA VAL SER VAL ASN SEQRES 56 A 913 ALA TYR PHE PRO ARG GLY ASN TRP PHE SER LEU PHE ASN SEQRES 57 A 913 TYR THR SER SER VAL SER VAL SER ALA GLY THR TYR VAL SEQRES 58 A 913 SER LEU SER ALA PRO PRO ASP HIS ILE ASN VAL HIS ILE SEQRES 59 A 913 HIS GLU GLY ASN ILE VAL ALA MET GLN GLY GLU ALA MET SEQRES 60 A 913 THR THR GLN ALA ALA ARG SER THR PRO PHE HIS LEU LEU SEQRES 61 A 913 VAL VAL MET SER ASP HIS VAL ALA SER THR GLY GLU LEU SEQRES 62 A 913 PHE LEU ASP ASN GLY ILE GLU MET ASP ILE GLY GLY PRO SEQRES 63 A 913 GLY GLY LYS TRP THR LEU VAL ARG PHE PHE ALA GLU SER SEQRES 64 A 913 GLY ILE ASN ASN LEU THR ILE SER SER GLU VAL VAL ASN SEQRES 65 A 913 ARG GLY TYR ALA MET SER GLN ARG TRP VAL MET ASP LYS SEQRES 66 A 913 ILE THR ILE LEU GLY LEU LYS ARG ARG VAL ARG ILE LYS SEQRES 67 A 913 GLU TYR THR VAL GLN LYS ASP ALA GLY ALA ILE LYS ILE SEQRES 68 A 913 LYS GLY LEU GLY LEU ARG THR SER SER HIS ASN GLN GLY SEQRES 69 A 913 GLY PHE VAL VAL SER VAL ILE SER ASP LEU ARG GLN LEU SEQRES 70 A 913 VAL GLY GLN ALA PHE LYS LEU GLU LEU GLU PHE GLU GLY SEQRES 71 A 913 ALA THR ARG MODRES 3W38 ASN A 404 ASN GLYCOSYLATION SITE MODRES 3W38 ASN A 728 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET FUC B 2 10 HET NAG B 3 14 HET NAG A1004 14 HET SO4 A1005 5 HET SO4 A1006 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 FUC C6 H12 O5 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *35(H2 O) HELIX 1 1 ASN A 182 PHE A 186 5 5 HELIX 2 2 THR A 299 GLY A 312 1 14 HELIX 3 3 PRO A 318 GLY A 323 5 6 HELIX 4 4 ASP A 333 ALA A 347 1 15 HELIX 5 5 ASP A 357 MET A 361 5 5 HELIX 6 6 PRO A 375 ASN A 389 1 15 HELIX 7 7 TYR A 407 SER A 416 1 10 HELIX 8 8 ASP A 443 LEU A 461 1 19 HELIX 9 9 ASN A 495 GLY A 499 5 5 HELIX 10 10 GLU A 520 HIS A 524 1 5 HELIX 11 11 LEU A 526 ARG A 541 1 16 HELIX 12 12 GLY A 557 TYR A 561 5 5 HELIX 13 13 ARG A 572 PHE A 589 1 18 HELIX 14 14 THR A 606 ALA A 618 1 13 HELIX 15 15 TRP A 639 LEU A 656 1 18 HELIX 16 16 LEU A 656 GLY A 671 1 16 HELIX 17 17 PRO A 677 PHE A 682 1 6 HELIX 18 18 ASP A 685 TYR A 689 5 5 HELIX 19 19 THR A 768 SER A 774 1 7 HELIX 20 20 ASN A 832 MET A 837 1 6 SHEET 1 A 8 TYR A 45 VAL A 52 0 SHEET 2 A 8 SER A 59 LEU A 66 -1 O THR A 61 N LYS A 51 SHEET 3 A 8 PHE A 79 GLU A 88 -1 O LEU A 80 N LEU A 64 SHEET 4 A 8 THR A 91 ASP A 98 -1 O ARG A 93 N SER A 85 SHEET 5 A 8 ILE A 290 PHE A 295 -1 O LEU A 292 N ILE A 94 SHEET 6 A 8 SER A 260 LEU A 266 -1 N PHE A 265 O TYR A 293 SHEET 7 A 8 ASN A 241 ARG A 253 -1 N ASP A 251 O HIS A 262 SHEET 8 A 8 ALA A 205 HIS A 213 -1 N LEU A 210 O PHE A 248 SHEET 1 B 4 THR A 140 LEU A 143 0 SHEET 2 B 4 LEU A 150 PHE A 155 -1 O PHE A 152 N LEU A 143 SHEET 3 B 4 GLY A 161 ARG A 166 -1 O GLY A 161 N PHE A 155 SHEET 4 B 4 VAL A 172 ALA A 176 -1 O PHE A 174 N ILE A 164 SHEET 1 C 5 ILE A 188 LYS A 190 0 SHEET 2 C 5 TYR A 193 SER A 199 -1 O GLN A 195 N ILE A 188 SHEET 3 C 5 ARG A 280 VAL A 285 -1 O VAL A 285 N LEU A 194 SHEET 4 C 5 MET A 272 TYR A 276 -1 N ASP A 273 O LYS A 284 SHEET 5 C 5 GLN A 224 LEU A 228 -1 N LEU A 226 O VAL A 274 SHEET 1 D 8 ILE A 594 GLY A 595 0 SHEET 2 D 8 ALA A 563 TRP A 565 1 N HIS A 564 O GLY A 595 SHEET 3 D 8 LEU A 549 SER A 551 1 N SER A 551 O ALA A 563 SHEET 4 D 8 ILE A 466 ILE A 468 1 N ILE A 468 O LEU A 550 SHEET 5 D 8 ARG A 392 LEU A 397 1 N LEU A 397 O TRP A 467 SHEET 6 D 8 VAL A 353 THR A 356 1 N MET A 354 O ARG A 392 SHEET 7 D 8 HIS A 325 GLN A 326 1 N GLN A 326 O VAL A 353 SHEET 8 D 8 ARG A 624 ASP A 625 1 O ASP A 625 N HIS A 325 SHEET 1 E 3 ILE A 401 ASN A 402 0 SHEET 2 E 3 GLY A 434 TYR A 437 -1 O TYR A 437 N ILE A 401 SHEET 3 E 3 LEU A 428 VAL A 431 -1 N VAL A 431 O GLY A 434 SHEET 1 F 2 LYS A 421 ARG A 422 0 SHEET 2 F 2 ASN A 425 PRO A 426 -1 O ASN A 425 N ARG A 422 SHEET 1 G 2 MET A 513 HIS A 514 0 SHEET 2 G 2 VAL A 518 THR A 519 -1 O VAL A 518 N HIS A 514 SHEET 1 H 6 ALA A 675 ARG A 676 0 SHEET 2 H 6 PHE A 695 ILE A 697 -1 O LEU A 696 N ARG A 676 SHEET 3 H 6 ILE A 701 SER A 704 -1 O VAL A 703 N PHE A 695 SHEET 4 H 6 ASN A 751 HIS A 755 -1 O HIS A 753 N MET A 702 SHEET 5 H 6 GLY A 721 SER A 725 -1 N PHE A 724 O ILE A 754 SHEET 6 H 6 SER A 732 VAL A 735 -1 O VAL A 733 N TRP A 723 SHEET 1 I 2 SER A 713 PHE A 718 0 SHEET 2 I 2 THR A 739 SER A 744 -1 O VAL A 741 N ALA A 716 SHEET 1 J 9 VAL A 855 ILE A 857 0 SHEET 2 J 9 LYS A 903 PHE A 908 -1 O GLU A 907 N ARG A 856 SHEET 3 J 9 ASN A 823 VAL A 831 -1 N ILE A 826 O LEU A 904 SHEET 4 J 9 TRP A 810 SER A 819 -1 N ARG A 814 O GLU A 829 SHEET 5 J 9 SER A 789 ASP A 796 -1 N LEU A 793 O VAL A 813 SHEET 6 J 9 ASN A 758 MET A 762 1 N ILE A 759 O THR A 790 SHEET 7 J 9 PHE A 777 VAL A 782 -1 O HIS A 778 N MET A 762 SHEET 8 J 9 VAL A 842 LEU A 851 1 O VAL A 842 N PHE A 777 SHEET 9 J 9 VAL A 887 LEU A 897 -1 O GLN A 896 N MET A 843 SSBOND 1 CYS A 599 CYS A 610 1555 1555 2.06 LINK ND2 ASN A 404 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 728 C1 NAG A1004 1555 1555 1.46 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 3 1555 1555 1.43 CISPEP 1 THR A 158 PRO A 159 0 2.42 CISPEP 2 GLY A 211 GLU A 212 0 2.64 CISPEP 3 SER A 255 PRO A 256 0 6.85 CISPEP 4 GLY A 297 ARG A 298 0 6.84 CISPEP 5 GLU A 472 ALA A 473 0 8.61 CRYST1 83.534 95.463 107.651 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011971 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009289 0.00000