HEADER IMMUNE SYSTEM 13-DEC-12 3W39 TITLE CRYSTAL STRUCTURE OF HLA-B*5201 IN COMPLEXED WITH HIV IMMUNODOMINANT TITLE 2 EPITOPE (TAFTIPSI) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-52 ALPHA CHAIN; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: EXTRACELLULAR RESIDUES 25-300; COMPND 5 SYNONYM: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN HEAVY CHAIN, BW-52, COMPND 6 HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-5 ALPHA CHAIN, MHC CLASS I COMPND 7 ANTIGEN B*52; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 11 CHAIN: B, E; COMPND 12 SYNONYM: BETA-2-MICROGLOBULIN FORM PI 5.3; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PEPTID FROM GAG-POL POLYPROTEIN; COMPND 16 CHAIN: C, F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 SOURCE 20 ISOLATE); SOURCE 21 ORGANISM_TAXID: 11683; SOURCE 22 OTHER_DETAILS: SYNTHETIC HIV-1 PEPTIDE KEYWDS CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX, MHC, MEMBRANE, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.YAGITA,N.KUSE,K.KUROKI,H.GATANAGA,J.M.CARLSON,T.CHIKATA,Z.L.BRUMME, AUTHOR 2 H.MURAKOSHI,T.AKAHOSHI,N.PFEIFER,S.MALLAL,M.JOHN,T.OSE,H.MATSUBARA, AUTHOR 3 R.KANDA,Y.FUKUNAGA,K.HONDA,Y.KAWASHIMA,Y.ARIUMI,S.OKA,K.MAENAKA, AUTHOR 4 M.TAKIGUCHI REVDAT 3 30-OCT-24 3W39 1 REMARK REVDAT 2 08-NOV-23 3W39 1 SEQADV REVDAT 1 13-FEB-13 3W39 0 JRNL AUTH Y.YAGITA,N.KUSE,K.KUROKI,H.GATANAGA,J.M.CARLSON,T.CHIKATA, JRNL AUTH 2 Z.L.BRUMME,H.MURAKOSHI,T.AKAHOSHI,N.PFEIFER,S.MALLAL,M.JOHN, JRNL AUTH 3 T.OSE,H.MATSUBARA,R.KANDA,Y.FUKUNAGA,K.HONDA,Y.KAWASHIMA, JRNL AUTH 4 Y.ARIUMI,S.OKA,K.MAENAKA,M.TAKIGUCHI JRNL TITL DISTINCT HIV-1 ESCAPE PATTERNS SELECTED BY CYTOTOXIC T CELLS JRNL TITL 2 WITH IDENTICAL EPITOPE SPECIFICITY JRNL REF J.VIROL. V. 87 2253 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23236061 JRNL DOI 10.1128/JVI.02572-12 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 17704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.298 REMARK 3 R VALUE (WORKING SET) : 0.295 REMARK 3 FREE R VALUE : 0.347 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8050 - 5.9242 0.98 2617 121 0.2722 0.2739 REMARK 3 2 5.9242 - 4.7048 0.97 2452 135 0.2851 0.3025 REMARK 3 3 4.7048 - 4.1109 0.98 2458 132 0.2787 0.3164 REMARK 3 4 4.1109 - 3.7353 0.97 2419 117 0.2938 0.3249 REMARK 3 5 3.7353 - 3.4678 0.96 2358 130 0.2896 0.3640 REMARK 3 6 3.4678 - 3.2634 0.95 2323 134 0.3201 0.4235 REMARK 3 7 3.2634 - 3.1001 0.90 2165 143 0.3554 0.4535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6496 REMARK 3 ANGLE : 1.484 8826 REMARK 3 CHIRALITY : 0.087 906 REMARK 3 PLANARITY : 0.006 1164 REMARK 3 DIHEDRAL : 17.328 2396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 2267 REMARK 3 RMSD : 0.111 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 829 REMARK 3 RMSD : 0.124 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000095830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18422 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.24100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1E28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M SODIUM ACETATE, REMARK 280 0.1M BIS TRIS PROPANE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.52250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.17350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.17350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.52250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 MET E 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR D 144 OXT ILE F 8 2.04 REMARK 500 OD2 ASP D 221 NH1 ARG D 257 2.17 REMARK 500 OD2 ASP A 221 NH1 ARG A 257 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 165 CB CYS A 165 SG 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 18 72.29 -114.78 REMARK 500 ASP A 30 -132.14 57.68 REMARK 500 ARG A 36 121.32 -171.23 REMARK 500 ALA A 42 108.66 -57.58 REMARK 500 SER A 43 75.96 28.91 REMARK 500 PRO A 44 127.86 -31.84 REMARK 500 TRP A 52 13.72 -69.50 REMARK 500 ASN A 87 70.06 44.24 REMARK 500 GLU A 90 36.31 -78.22 REMARK 500 LEU A 111 -41.26 -131.21 REMARK 500 SER A 132 -18.46 -146.41 REMARK 500 ALA A 150 28.53 -74.03 REMARK 500 ALA A 151 -7.44 -157.43 REMARK 500 ALA A 154 -16.85 -49.20 REMARK 500 GLN A 181 51.75 -95.55 REMARK 500 PRO A 194 107.56 -53.48 REMARK 500 ASP A 224 102.69 -54.64 REMARK 500 GLN A 225 46.83 -90.76 REMARK 500 ARG A 240 -21.40 49.12 REMARK 500 LYS A 244 129.43 169.62 REMARK 500 PRO A 251 -146.45 -62.41 REMARK 500 GLU A 254 20.79 -76.24 REMARK 500 PRO B 14 102.99 -37.20 REMARK 500 SER B 52 -161.80 -71.89 REMARK 500 TRP B 60 -0.38 72.97 REMARK 500 PRO B 90 127.75 -33.50 REMARK 500 ALA C 2 -163.72 -68.92 REMARK 500 SER C 7 -152.04 -84.97 REMARK 500 ASP D 30 -132.30 62.76 REMARK 500 SER D 43 77.82 24.85 REMARK 500 PRO D 44 131.63 -34.26 REMARK 500 TRP D 52 14.18 -67.70 REMARK 500 GLU D 90 40.91 -78.60 REMARK 500 ALA D 91 -52.26 -122.36 REMARK 500 SER D 132 -23.03 -143.26 REMARK 500 ALA D 150 34.30 -79.62 REMARK 500 ALA D 151 -4.72 -162.91 REMARK 500 GLN D 181 48.00 -93.44 REMARK 500 PRO D 194 109.05 -53.35 REMARK 500 HIS D 198 -51.44 -121.49 REMARK 500 ASP D 224 98.14 -50.16 REMARK 500 GLN D 225 46.31 -89.39 REMARK 500 ASP D 239 55.56 -144.45 REMARK 500 ARG D 240 -24.48 59.01 REMARK 500 LYS D 244 135.80 176.99 REMARK 500 PRO D 251 -147.32 -64.39 REMARK 500 PRO E 14 106.72 -39.49 REMARK 500 PRO E 32 -169.98 -72.54 REMARK 500 TRP E 60 -1.31 84.34 REMARK 500 PRO E 90 132.29 -35.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 4 ILE C 5 -145.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 3W39 A 2 277 UNP P30490 1B52_HUMAN 25 300 DBREF 3W39 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3W39 C 1 8 UNP P12499 POL_HV1Z2 716 723 DBREF 3W39 D 2 277 UNP P30490 1B52_HUMAN 25 300 DBREF 3W39 E 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 3W39 F 1 8 UNP P12499 POL_HV1Z2 716 723 SEQADV 3W39 MET A 1 UNP P30490 EXPRESSION TAG SEQADV 3W39 MET B 0 UNP P61769 EXPRESSION TAG SEQADV 3W39 MET D 1 UNP P30490 EXPRESSION TAG SEQADV 3W39 MET E 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 277 MET GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SEQRES 2 A 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 277 ASP ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP SEQRES 5 A 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR SEQRES 6 A 277 GLN ILE SER LYS THR ASN THR GLN THR TYR ARG GLU ASN SEQRES 7 A 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 277 GLY SER HIS THR TRP GLN THR MET TYR GLY CYS ASP VAL SEQRES 9 A 277 GLY PRO ASP GLY ARG LEU LEU ARG GLY HIS ASN GLN TYR SEQRES 10 A 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 A 277 LEU SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SEQRES 12 A 277 THR GLN ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN SEQRES 13 A 277 LEU ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU SEQRES 14 A 277 ARG ARG HIS LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 277 ALA ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO VAL SEQRES 16 A 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 A 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 277 ARG PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 A 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 277 ARG TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 8 THR ALA PHE THR ILE PRO SER ILE SEQRES 1 D 277 MET GLY SER HIS SER MET ARG TYR PHE TYR THR ALA MET SEQRES 2 D 277 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 D 277 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 D 277 ASP ALA ALA SER PRO ARG THR GLU PRO ARG ALA PRO TRP SEQRES 5 D 277 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR SEQRES 6 D 277 GLN ILE SER LYS THR ASN THR GLN THR TYR ARG GLU ASN SEQRES 7 D 277 LEU ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA SEQRES 8 D 277 GLY SER HIS THR TRP GLN THR MET TYR GLY CYS ASP VAL SEQRES 9 D 277 GLY PRO ASP GLY ARG LEU LEU ARG GLY HIS ASN GLN TYR SEQRES 10 D 277 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP SEQRES 11 D 277 LEU SER SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SEQRES 12 D 277 THR GLN ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN SEQRES 13 D 277 LEU ARG ALA TYR LEU GLU GLY LEU CYS VAL GLU TRP LEU SEQRES 14 D 277 ARG ARG HIS LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 D 277 ALA ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO VAL SEQRES 16 D 277 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY SEQRES 17 D 277 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 D 277 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 D 277 ARG PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA SEQRES 20 D 277 VAL VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS SEQRES 21 D 277 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 D 277 ARG TRP GLU PRO SEQRES 1 E 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 E 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 E 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 E 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 E 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 E 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 E 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 E 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 F 8 THR ALA PHE THR ILE PRO SER ILE HELIX 1 1 GLY A 57 ASN A 87 1 31 HELIX 2 2 ASP A 138 ALA A 150 1 13 HELIX 3 3 ARG A 152 GLY A 163 1 12 HELIX 4 4 GLY A 163 GLY A 176 1 14 HELIX 5 5 GLY A 176 GLN A 181 1 6 HELIX 6 6 GLN A 225 GLN A 227 5 3 HELIX 7 7 GLY A 253 GLN A 256 5 4 HELIX 8 8 GLY D 57 TYR D 86 1 30 HELIX 9 9 ASP D 138 ALA D 150 1 13 HELIX 10 10 ARG D 152 GLY D 163 1 12 HELIX 11 11 GLY D 163 GLY D 176 1 14 HELIX 12 12 GLY D 176 GLN D 181 1 6 HELIX 13 13 GLN D 225 GLN D 227 5 3 HELIX 14 14 GLY D 253 GLN D 256 5 4 SHEET 1 A 6 THR A 32 ASP A 38 0 SHEET 2 A 6 ARG A 22 VAL A 29 -1 N ALA A 25 O PHE A 37 SHEET 3 A 6 HIS A 4 MET A 13 -1 N ARG A 7 O TYR A 28 SHEET 4 A 6 THR A 95 VAL A 104 -1 O TYR A 100 N TYR A 8 SHEET 5 A 6 LEU A 110 TYR A 119 -1 O GLN A 116 N MET A 99 SHEET 6 A 6 LYS A 122 LEU A 127 -1 O ILE A 125 N TYR A 117 SHEET 1 B 4 HIS A 189 PRO A 194 0 SHEET 2 B 4 ALA A 200 PHE A 209 -1 O TRP A 205 N HIS A 189 SHEET 3 B 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 B 4 THR A 229 LEU A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 C 4 HIS A 189 PRO A 194 0 SHEET 2 C 4 ALA A 200 PHE A 209 -1 O TRP A 205 N HIS A 189 SHEET 3 C 4 PHE A 242 VAL A 250 -1 O ALA A 246 N CYS A 204 SHEET 4 C 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 D 2 THR A 215 ARG A 220 0 SHEET 2 D 2 TYR A 258 GLN A 263 -1 O HIS A 261 N THR A 217 SHEET 1 E 4 LYS B 6 SER B 11 0 SHEET 2 E 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 E 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 E 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 F 4 LYS B 6 SER B 11 0 SHEET 2 F 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 F 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 F 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 G 4 GLU B 44 ARG B 45 0 SHEET 2 G 4 ILE B 35 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 G 4 TYR B 78 HIS B 84 -1 O ALA B 79 N LEU B 40 SHEET 4 G 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 H 7 GLU D 47 PRO D 48 0 SHEET 2 H 7 THR D 32 ASP D 38 -1 N ARG D 36 O GLU D 47 SHEET 3 H 7 ARG D 22 VAL D 29 -1 N ALA D 25 O PHE D 37 SHEET 4 H 7 HIS D 4 MET D 13 -1 N ARG D 7 O TYR D 28 SHEET 5 H 7 THR D 95 VAL D 104 -1 O TRP D 96 N ALA D 12 SHEET 6 H 7 LEU D 110 TYR D 119 -1 O GLN D 116 N MET D 99 SHEET 7 H 7 LYS D 122 ALA D 126 -1 O ILE D 125 N TYR D 117 SHEET 1 I 4 LYS D 187 PRO D 194 0 SHEET 2 I 4 ALA D 200 PHE D 209 -1 O TRP D 205 N HIS D 189 SHEET 3 I 4 PHE D 242 VAL D 250 -1 O ALA D 246 N CYS D 204 SHEET 4 I 4 THR D 229 LEU D 231 -1 N GLU D 230 O ALA D 247 SHEET 1 J 4 LYS D 187 PRO D 194 0 SHEET 2 J 4 ALA D 200 PHE D 209 -1 O TRP D 205 N HIS D 189 SHEET 3 J 4 PHE D 242 VAL D 250 -1 O ALA D 246 N CYS D 204 SHEET 4 J 4 ARG D 235 PRO D 236 -1 N ARG D 235 O GLN D 243 SHEET 1 K 2 THR D 215 ARG D 220 0 SHEET 2 K 2 TYR D 258 GLN D 263 -1 O HIS D 261 N THR D 217 SHEET 1 L 4 LYS E 6 SER E 11 0 SHEET 2 L 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 L 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 L 4 GLU E 50 HIS E 51 -1 N GLU E 50 O TYR E 67 SHEET 1 M 4 LYS E 6 SER E 11 0 SHEET 2 M 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 M 4 PHE E 62 PHE E 70 -1 O TYR E 66 N CYS E 25 SHEET 4 M 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 N 4 GLU E 44 ARG E 45 0 SHEET 2 N 4 ILE E 35 LYS E 41 -1 N LYS E 41 O GLU E 44 SHEET 3 N 4 TYR E 78 HIS E 84 -1 O ALA E 79 N LEU E 40 SHEET 4 N 4 LYS E 91 LYS E 94 -1 O VAL E 93 N CYS E 80 SSBOND 1 CYS A 102 CYS A 165 1555 1555 2.03 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.02 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS D 102 CYS D 165 1555 1555 2.04 SSBOND 5 CYS D 204 CYS D 260 1555 1555 2.03 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.01 CISPEP 1 TYR A 210 PRO A 211 0 -2.93 CISPEP 2 HIS B 31 PRO B 32 0 -1.54 CISPEP 3 TYR D 210 PRO D 211 0 -3.26 CISPEP 4 HIS E 31 PRO E 32 0 3.27 CRYST1 69.045 83.255 170.347 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005870 0.00000