data_3W52 # _entry.id 3W52 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3W52 pdb_00003w52 10.2210/pdb3w52/pdb RCSB RCSB095895 ? ? WWPDB D_1000095895 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-17 2 'Structure model' 1 1 2017-11-22 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-08 5 'Structure model' 2 2 2024-10-30 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Database references' 6 3 'Structure model' 'Derived calculations' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' atom_site 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_nonpoly_scheme 13 3 'Structure model' pdbx_struct_assembly_gen 14 3 'Structure model' pdbx_struct_conn_angle 15 3 'Structure model' pdbx_validate_close_contact 16 3 'Structure model' struct_asym 17 3 'Structure model' struct_conn 18 3 'Structure model' struct_ref_seq_dif 19 3 'Structure model' struct_site 20 3 'Structure model' struct_site_gen 21 4 'Structure model' chem_comp 22 4 'Structure model' chem_comp_atom 23 4 'Structure model' chem_comp_bond 24 4 'Structure model' database_2 25 4 'Structure model' pdbx_initial_refinement_model 26 5 'Structure model' pdbx_entry_details 27 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.name' 2 3 'Structure model' '_atom_site.auth_asym_id' 3 3 'Structure model' '_atom_site.auth_seq_id' 4 3 'Structure model' '_atom_site.label_asym_id' 5 3 'Structure model' '_atom_site.label_entity_id' 6 3 'Structure model' '_chem_comp.name' 7 3 'Structure model' '_chem_comp.type' 8 3 'Structure model' '_entity.formula_weight' 9 3 'Structure model' '_entity.pdbx_description' 10 3 'Structure model' '_entity.pdbx_number_of_molecules' 11 3 'Structure model' '_entity.type' 12 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.value' 27 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 28 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 29 3 'Structure model' '_struct_conn.pdbx_dist_value' 30 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 31 3 'Structure model' '_struct_conn.pdbx_role' 32 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 39 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 40 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 41 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 43 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 45 3 'Structure model' '_struct_ref_seq_dif.details' 46 4 'Structure model' '_chem_comp.pdbx_synonyms' 47 4 'Structure model' '_database_2.pdbx_DOI' 48 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3W52 _pdbx_database_status.recvd_initial_deposition_date 2013-01-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3sng 'similar enzyme from tomato' unspecified PDB 1ak0 'similar three-zinc nuclease' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chou, T.L.' 1 'Ko, T.P.' 2 'Ko, C.Y.' 3 'Shaw, J.F.' 4 'Wang, A.H.J.' 5 # _citation.id primary _citation.title 'Mechanistic insights to catalysis by a zinc-dependent bi-functional nuclease from Arabidopsis thaliana' _citation.journal_abbrev 'BIOCATAL AGRIC BIOTECHNOL' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1878-8181 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI 10.1016/j.bcab.2013.03.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chou, T.L.' 1 ? primary 'Ko, T.P.' 2 ? primary 'Ko, C.Y.' 3 ? primary 'Lin, T.Y.' 4 ? primary 'Guo, R.T.' 5 ? primary 'Yu, T.F.' 6 ? primary 'Chan, H.C.' 7 ? primary 'Shaw, J.F.' 8 ? primary 'Wang, A.H.J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Endonuclease 2' 30606.156 1 3.1.30.1 ? 'UNP residues 28-290' ? 2 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? 3 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 2 ? ? ? ? 4 non-polymer syn ADENINE 135.127 1 ? ? ? ? 5 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 6 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 7 water nat water 18.015 375 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AtENDO2, Deoxyribonuclease ENDO2, Single-stranded-nucleate endonuclease ENDO2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;WGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPDACSYQYNRDCKDESGE KGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSN IIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCTKKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRL PIVYQRLAQGGVRLAATLNRIFGHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;WGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPDACSYQYNRDCKDESGE KGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSN IIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCTKKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRL PIVYQRLAQGGVRLAATLNRIFGHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 ADENINE ADE 5 'ZINC ION' ZN 6 'SULFATE ION' SO4 7 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TRP n 1 2 GLY n 1 3 LYS n 1 4 GLU n 1 5 GLY n 1 6 HIS n 1 7 GLU n 1 8 ILE n 1 9 ILE n 1 10 CYS n 1 11 LYS n 1 12 ILE n 1 13 ALA n 1 14 GLN n 1 15 THR n 1 16 ARG n 1 17 LEU n 1 18 ASP n 1 19 GLU n 1 20 THR n 1 21 ALA n 1 22 ALA n 1 23 LYS n 1 24 ALA n 1 25 VAL n 1 26 LYS n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 PRO n 1 31 GLU n 1 32 SER n 1 33 ALA n 1 34 GLU n 1 35 GLY n 1 36 ASP n 1 37 LEU n 1 38 SER n 1 39 SER n 1 40 LEU n 1 41 CYS n 1 42 LEU n 1 43 TRP n 1 44 ALA n 1 45 ASP n 1 46 ARG n 1 47 VAL n 1 48 LYS n 1 49 PHE n 1 50 ARG n 1 51 TYR n 1 52 HIS n 1 53 TRP n 1 54 SER n 1 55 SER n 1 56 PRO n 1 57 LEU n 1 58 HIS n 1 59 TYR n 1 60 ILE n 1 61 ASN n 1 62 THR n 1 63 PRO n 1 64 ASP n 1 65 ALA n 1 66 CYS n 1 67 SER n 1 68 TYR n 1 69 GLN n 1 70 TYR n 1 71 ASN n 1 72 ARG n 1 73 ASP n 1 74 CYS n 1 75 LYS n 1 76 ASP n 1 77 GLU n 1 78 SER n 1 79 GLY n 1 80 GLU n 1 81 LYS n 1 82 GLY n 1 83 ARG n 1 84 CYS n 1 85 VAL n 1 86 ALA n 1 87 GLY n 1 88 ALA n 1 89 ILE n 1 90 TYR n 1 91 ASN n 1 92 TYR n 1 93 THR n 1 94 THR n 1 95 GLN n 1 96 LEU n 1 97 LEU n 1 98 SER n 1 99 TYR n 1 100 LYS n 1 101 THR n 1 102 ALA n 1 103 ALA n 1 104 SER n 1 105 SER n 1 106 GLN n 1 107 SER n 1 108 GLN n 1 109 TYR n 1 110 ASN n 1 111 LEU n 1 112 THR n 1 113 GLU n 1 114 ALA n 1 115 LEU n 1 116 LEU n 1 117 PHE n 1 118 VAL n 1 119 SER n 1 120 HIS n 1 121 PHE n 1 122 MET n 1 123 GLY n 1 124 ASP n 1 125 ILE n 1 126 HIS n 1 127 GLN n 1 128 PRO n 1 129 LEU n 1 130 HIS n 1 131 VAL n 1 132 SER n 1 133 TYR n 1 134 ALA n 1 135 SER n 1 136 ASP n 1 137 LYS n 1 138 GLY n 1 139 GLY n 1 140 ASN n 1 141 THR n 1 142 ILE n 1 143 GLU n 1 144 VAL n 1 145 HIS n 1 146 TRP n 1 147 TYR n 1 148 THR n 1 149 ARG n 1 150 LYS n 1 151 ALA n 1 152 ASN n 1 153 LEU n 1 154 HIS n 1 155 HIS n 1 156 ILE n 1 157 TRP n 1 158 ASP n 1 159 SER n 1 160 ASN n 1 161 ILE n 1 162 ILE n 1 163 GLU n 1 164 THR n 1 165 ALA n 1 166 GLU n 1 167 ALA n 1 168 ASP n 1 169 LEU n 1 170 TYR n 1 171 ASN n 1 172 SER n 1 173 ALA n 1 174 LEU n 1 175 GLU n 1 176 GLY n 1 177 MET n 1 178 VAL n 1 179 ASP n 1 180 ALA n 1 181 LEU n 1 182 LYS n 1 183 LYS n 1 184 ASN n 1 185 ILE n 1 186 THR n 1 187 THR n 1 188 GLU n 1 189 TRP n 1 190 ALA n 1 191 ASP n 1 192 GLN n 1 193 VAL n 1 194 LYS n 1 195 ARG n 1 196 TRP n 1 197 GLU n 1 198 THR n 1 199 CYS n 1 200 THR n 1 201 LYS n 1 202 LYS n 1 203 THR n 1 204 ALA n 1 205 CYS n 1 206 PRO n 1 207 ASP n 1 208 ILE n 1 209 TYR n 1 210 ALA n 1 211 SER n 1 212 GLU n 1 213 GLY n 1 214 ILE n 1 215 GLN n 1 216 ALA n 1 217 ALA n 1 218 CYS n 1 219 ASP n 1 220 TRP n 1 221 ALA n 1 222 TYR n 1 223 LYS n 1 224 GLY n 1 225 VAL n 1 226 THR n 1 227 GLU n 1 228 GLY n 1 229 ASP n 1 230 THR n 1 231 LEU n 1 232 GLU n 1 233 ASP n 1 234 GLU n 1 235 TYR n 1 236 PHE n 1 237 TYR n 1 238 SER n 1 239 ARG n 1 240 LEU n 1 241 PRO n 1 242 ILE n 1 243 VAL n 1 244 TYR n 1 245 GLN n 1 246 ARG n 1 247 LEU n 1 248 ALA n 1 249 GLN n 1 250 GLY n 1 251 GLY n 1 252 VAL n 1 253 ARG n 1 254 LEU n 1 255 ALA n 1 256 ALA n 1 257 THR n 1 258 LEU n 1 259 ASN n 1 260 ARG n 1 261 ILE n 1 262 PHE n 1 263 GLY n 1 264 HIS n 1 265 HIS n 1 266 HIS n 1 267 HIS n 1 268 HIS n 1 269 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ENDO2, At1g68290, T22E19.8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details 'The transgenic plant was produced by tranformation using the bacterium hosting the plasmid.' _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Agrobacterium tumefaciens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 358 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pBI121 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? 4 3 DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 5 3 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0 6 3 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TRP 1 1 1 TRP TRP A . n A 1 2 GLY 2 2 2 GLY GLY A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 GLU 4 4 4 GLU GLU A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 CYS 41 41 41 CYS CYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASP 45 45 45 ASP ASP A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 HIS 52 52 52 HIS HIS A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 TYR 68 68 68 TYR TYR A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 CYS 74 74 74 CYS CYS A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 THR 94 94 94 THR THR A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 LYS 100 100 100 LYS LYS A . n A 1 101 THR 101 101 ? ? ? A . n A 1 102 ALA 102 102 ? ? ? A . n A 1 103 ALA 103 103 ? ? ? A . n A 1 104 SER 104 104 ? ? ? A . n A 1 105 SER 105 105 ? ? ? A . n A 1 106 GLN 106 106 ? ? ? A . n A 1 107 SER 107 107 ? ? ? A . n A 1 108 GLN 108 108 108 GLN GLN A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 PHE 117 117 117 PHE PHE A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 MET 122 122 122 MET MET A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ILE 125 125 125 ILE ILE A . n A 1 126 HIS 126 126 126 HIS HIS A . n A 1 127 GLN 127 127 127 GLN GLN A . n A 1 128 PRO 128 128 128 PRO PRO A . n A 1 129 LEU 129 129 129 LEU LEU A . n A 1 130 HIS 130 130 130 HIS HIS A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 GLY 138 138 138 GLY GLY A . n A 1 139 GLY 139 139 139 GLY GLY A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 HIS 145 145 145 HIS HIS A . n A 1 146 TRP 146 146 146 TRP TRP A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ASN 152 152 152 ASN ASN A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 TRP 157 157 157 TRP TRP A . n A 1 158 ASP 158 158 158 ASP ASP A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 ILE 161 161 161 ILE ILE A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 THR 164 164 164 THR THR A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 SER 172 172 172 SER SER A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 MET 177 177 177 MET MET A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 ASP 179 179 179 ASP ASP A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 ILE 185 185 185 ILE ILE A . n A 1 186 THR 186 186 186 THR THR A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 TRP 189 189 189 TRP TRP A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 ASP 191 191 191 ASP ASP A . n A 1 192 GLN 192 192 192 GLN GLN A . n A 1 193 VAL 193 193 193 VAL VAL A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ARG 195 195 195 ARG ARG A . n A 1 196 TRP 196 196 196 TRP TRP A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 CYS 199 199 199 CYS CYS A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 THR 203 203 203 THR THR A . n A 1 204 ALA 204 204 204 ALA ALA A . n A 1 205 CYS 205 205 205 CYS CYS A . n A 1 206 PRO 206 206 206 PRO PRO A . n A 1 207 ASP 207 207 207 ASP ASP A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 TYR 209 209 209 TYR TYR A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 GLU 212 212 212 GLU GLU A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 GLN 215 215 215 GLN GLN A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 CYS 218 218 218 CYS CYS A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 TRP 220 220 220 TRP TRP A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 THR 226 226 226 THR THR A . n A 1 227 GLU 227 227 227 GLU GLU A . n A 1 228 GLY 228 228 228 GLY GLY A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 THR 230 230 230 THR THR A . n A 1 231 LEU 231 231 231 LEU LEU A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 GLU 234 234 234 GLU GLU A . n A 1 235 TYR 235 235 235 TYR TYR A . n A 1 236 PHE 236 236 236 PHE PHE A . n A 1 237 TYR 237 237 237 TYR TYR A . n A 1 238 SER 238 238 238 SER SER A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 TYR 244 244 244 TYR TYR A . n A 1 245 GLN 245 245 245 GLN GLN A . n A 1 246 ARG 246 246 246 ARG ARG A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 GLN 249 249 249 GLN GLN A . n A 1 250 GLY 250 250 250 GLY GLY A . n A 1 251 GLY 251 251 251 GLY GLY A . n A 1 252 VAL 252 252 252 VAL VAL A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 LEU 254 254 254 LEU LEU A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ALA 256 256 256 ALA ALA A . n A 1 257 THR 257 257 257 THR THR A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 ASN 259 259 259 ASN ASN A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 PHE 262 262 262 PHE PHE A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 HIS 264 264 ? ? ? A . n A 1 265 HIS 265 265 ? ? ? A . n A 1 266 HIS 266 266 ? ? ? A . n A 1 267 HIS 267 267 ? ? ? A . n A 1 268 HIS 268 268 ? ? ? A . n A 1 269 HIS 269 269 ? ? ? A . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 ? NAG 301 n B 2 NAG 2 B NAG 2 ? NAG 302 n B 2 BMA 3 B BMA 3 ? MAN 303 n C 3 NAG 1 C NAG 1 ? NAG 331 n C 3 NAG 2 C NAG 2 ? NAG 332 n D 3 NAG 1 D NAG 1 ? NAG 361 n D 3 NAG 2 D NAG 2 ? NAG 362 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ADE 1 308 401 ADE ADE A . F 5 ZN 1 309 431 ZN ZN2 A . G 5 ZN 1 310 432 ZN ZN2 A . H 5 ZN 1 311 433 ZN ZN2 A . I 6 SO4 1 312 461 SO4 SO4 A . J 6 SO4 1 313 462 SO4 SO4 A . K 6 SO4 1 314 463 SO4 SO4 A . L 7 HOH 1 501 501 HOH HOH A . L 7 HOH 2 502 502 HOH HOH A . L 7 HOH 3 503 503 HOH HOH A . L 7 HOH 4 504 504 HOH HOH A . L 7 HOH 5 505 505 HOH HOH A . L 7 HOH 6 506 506 HOH HOH A . L 7 HOH 7 507 507 HOH HOH A . L 7 HOH 8 508 508 HOH HOH A . L 7 HOH 9 509 509 HOH HOH A . L 7 HOH 10 510 510 HOH HOH A . L 7 HOH 11 511 511 HOH HOH A . L 7 HOH 12 512 512 HOH HOH A . L 7 HOH 13 513 513 HOH HOH A . L 7 HOH 14 514 514 HOH HOH A . L 7 HOH 15 515 515 HOH HOH A . L 7 HOH 16 516 516 HOH HOH A . L 7 HOH 17 517 517 HOH HOH A . L 7 HOH 18 518 518 HOH HOH A . L 7 HOH 19 519 519 HOH HOH A . L 7 HOH 20 520 520 HOH HOH A . L 7 HOH 21 521 521 HOH HOH A . L 7 HOH 22 522 522 HOH HOH A . L 7 HOH 23 523 523 HOH HOH A . L 7 HOH 24 524 524 HOH HOH A . L 7 HOH 25 525 525 HOH HOH A . L 7 HOH 26 526 526 HOH HOH A . L 7 HOH 27 527 527 HOH HOH A . L 7 HOH 28 528 528 HOH HOH A . L 7 HOH 29 529 529 HOH HOH A . L 7 HOH 30 530 530 HOH HOH A . L 7 HOH 31 531 531 HOH HOH A . L 7 HOH 32 532 532 HOH HOH A . L 7 HOH 33 533 533 HOH HOH A . L 7 HOH 34 534 534 HOH HOH A . L 7 HOH 35 535 535 HOH HOH A . L 7 HOH 36 536 536 HOH HOH A . L 7 HOH 37 537 537 HOH HOH A . L 7 HOH 38 538 538 HOH HOH A . L 7 HOH 39 539 539 HOH HOH A . L 7 HOH 40 540 540 HOH HOH A . L 7 HOH 41 541 541 HOH HOH A . L 7 HOH 42 542 542 HOH HOH A . L 7 HOH 43 543 543 HOH HOH A . L 7 HOH 44 544 544 HOH HOH A . L 7 HOH 45 545 545 HOH HOH A . L 7 HOH 46 546 546 HOH HOH A . L 7 HOH 47 547 547 HOH HOH A . L 7 HOH 48 548 548 HOH HOH A . L 7 HOH 49 549 549 HOH HOH A . L 7 HOH 50 550 550 HOH HOH A . L 7 HOH 51 551 551 HOH HOH A . L 7 HOH 52 552 552 HOH HOH A . L 7 HOH 53 553 553 HOH HOH A . L 7 HOH 54 554 554 HOH HOH A . L 7 HOH 55 555 555 HOH HOH A . L 7 HOH 56 556 556 HOH HOH A . L 7 HOH 57 557 557 HOH HOH A . L 7 HOH 58 558 558 HOH HOH A . L 7 HOH 59 559 559 HOH HOH A . L 7 HOH 60 560 560 HOH HOH A . L 7 HOH 61 561 561 HOH HOH A . L 7 HOH 62 562 562 HOH HOH A . L 7 HOH 63 563 563 HOH HOH A . L 7 HOH 64 564 564 HOH HOH A . L 7 HOH 65 565 565 HOH HOH A . L 7 HOH 66 566 566 HOH HOH A . L 7 HOH 67 567 567 HOH HOH A . L 7 HOH 68 568 568 HOH HOH A . L 7 HOH 69 569 569 HOH HOH A . L 7 HOH 70 570 570 HOH HOH A . L 7 HOH 71 571 571 HOH HOH A . L 7 HOH 72 572 572 HOH HOH A . L 7 HOH 73 573 573 HOH HOH A . L 7 HOH 74 574 574 HOH HOH A . L 7 HOH 75 575 575 HOH HOH A . L 7 HOH 76 576 576 HOH HOH A . L 7 HOH 77 577 577 HOH HOH A . L 7 HOH 78 578 578 HOH HOH A . L 7 HOH 79 579 579 HOH HOH A . L 7 HOH 80 580 580 HOH HOH A . L 7 HOH 81 581 581 HOH HOH A . L 7 HOH 82 582 582 HOH HOH A . L 7 HOH 83 583 583 HOH HOH A . L 7 HOH 84 584 584 HOH HOH A . L 7 HOH 85 585 585 HOH HOH A . L 7 HOH 86 586 586 HOH HOH A . L 7 HOH 87 587 587 HOH HOH A . L 7 HOH 88 588 588 HOH HOH A . L 7 HOH 89 589 589 HOH HOH A . L 7 HOH 90 590 590 HOH HOH A . L 7 HOH 91 591 591 HOH HOH A . L 7 HOH 92 592 592 HOH HOH A . L 7 HOH 93 593 593 HOH HOH A . L 7 HOH 94 594 594 HOH HOH A . L 7 HOH 95 595 595 HOH HOH A . L 7 HOH 96 596 596 HOH HOH A . L 7 HOH 97 597 597 HOH HOH A . L 7 HOH 98 598 598 HOH HOH A . L 7 HOH 99 599 599 HOH HOH A . L 7 HOH 100 600 600 HOH HOH A . L 7 HOH 101 601 601 HOH HOH A . L 7 HOH 102 602 602 HOH HOH A . L 7 HOH 103 603 603 HOH HOH A . L 7 HOH 104 604 604 HOH HOH A . L 7 HOH 105 605 605 HOH HOH A . L 7 HOH 106 606 606 HOH HOH A . L 7 HOH 107 607 607 HOH HOH A . L 7 HOH 108 608 608 HOH HOH A . L 7 HOH 109 609 609 HOH HOH A . L 7 HOH 110 610 610 HOH HOH A . L 7 HOH 111 611 611 HOH HOH A . L 7 HOH 112 612 612 HOH HOH A . L 7 HOH 113 613 613 HOH HOH A . L 7 HOH 114 614 614 HOH HOH A . L 7 HOH 115 615 615 HOH HOH A . L 7 HOH 116 616 616 HOH HOH A . L 7 HOH 117 617 617 HOH HOH A . L 7 HOH 118 618 618 HOH HOH A . L 7 HOH 119 619 619 HOH HOH A . L 7 HOH 120 620 620 HOH HOH A . L 7 HOH 121 621 621 HOH HOH A . L 7 HOH 122 622 622 HOH HOH A . L 7 HOH 123 623 623 HOH HOH A . L 7 HOH 124 624 624 HOH HOH A . L 7 HOH 125 625 625 HOH HOH A . L 7 HOH 126 626 626 HOH HOH A . L 7 HOH 127 627 627 HOH HOH A . L 7 HOH 128 628 628 HOH HOH A . L 7 HOH 129 629 629 HOH HOH A . L 7 HOH 130 630 630 HOH HOH A . L 7 HOH 131 631 631 HOH HOH A . L 7 HOH 132 632 632 HOH HOH A . L 7 HOH 133 633 633 HOH HOH A . L 7 HOH 134 634 634 HOH HOH A . L 7 HOH 135 635 635 HOH HOH A . L 7 HOH 136 636 636 HOH HOH A . L 7 HOH 137 637 637 HOH HOH A . L 7 HOH 138 638 638 HOH HOH A . L 7 HOH 139 639 639 HOH HOH A . L 7 HOH 140 640 640 HOH HOH A . L 7 HOH 141 641 641 HOH HOH A . L 7 HOH 142 642 642 HOH HOH A . L 7 HOH 143 643 643 HOH HOH A . L 7 HOH 144 644 644 HOH HOH A . L 7 HOH 145 645 645 HOH HOH A . L 7 HOH 146 646 646 HOH HOH A . L 7 HOH 147 647 647 HOH HOH A . L 7 HOH 148 648 648 HOH HOH A . L 7 HOH 149 649 649 HOH HOH A . L 7 HOH 150 650 650 HOH HOH A . L 7 HOH 151 651 651 HOH HOH A . L 7 HOH 152 652 652 HOH HOH A . L 7 HOH 153 653 653 HOH HOH A . L 7 HOH 154 654 654 HOH HOH A . L 7 HOH 155 655 655 HOH HOH A . L 7 HOH 156 656 656 HOH HOH A . L 7 HOH 157 657 657 HOH HOH A . L 7 HOH 158 658 658 HOH HOH A . L 7 HOH 159 659 659 HOH HOH A . L 7 HOH 160 660 660 HOH HOH A . L 7 HOH 161 661 661 HOH HOH A . L 7 HOH 162 662 662 HOH HOH A . L 7 HOH 163 663 663 HOH HOH A . L 7 HOH 164 664 664 HOH HOH A . L 7 HOH 165 665 665 HOH HOH A . L 7 HOH 166 666 666 HOH HOH A . L 7 HOH 167 667 667 HOH HOH A . L 7 HOH 168 668 668 HOH HOH A . L 7 HOH 169 669 669 HOH HOH A . L 7 HOH 170 670 670 HOH HOH A . L 7 HOH 171 671 671 HOH HOH A . L 7 HOH 172 672 672 HOH HOH A . L 7 HOH 173 673 673 HOH HOH A . L 7 HOH 174 674 674 HOH HOH A . L 7 HOH 175 675 675 HOH HOH A . L 7 HOH 176 676 676 HOH HOH A . L 7 HOH 177 677 677 HOH HOH A . L 7 HOH 178 678 678 HOH HOH A . L 7 HOH 179 679 679 HOH HOH A . L 7 HOH 180 680 680 HOH HOH A . L 7 HOH 181 681 681 HOH HOH A . L 7 HOH 182 682 682 HOH HOH A . L 7 HOH 183 683 683 HOH HOH A . L 7 HOH 184 684 684 HOH HOH A . L 7 HOH 185 685 685 HOH HOH A . L 7 HOH 186 686 686 HOH HOH A . L 7 HOH 187 687 687 HOH HOH A . L 7 HOH 188 688 688 HOH HOH A . L 7 HOH 189 689 689 HOH HOH A . L 7 HOH 190 690 690 HOH HOH A . L 7 HOH 191 691 691 HOH HOH A . L 7 HOH 192 692 692 HOH HOH A . L 7 HOH 193 693 693 HOH HOH A . L 7 HOH 194 694 694 HOH HOH A . L 7 HOH 195 695 695 HOH HOH A . L 7 HOH 196 696 696 HOH HOH A . L 7 HOH 197 697 697 HOH HOH A . L 7 HOH 198 698 698 HOH HOH A . L 7 HOH 199 699 699 HOH HOH A . L 7 HOH 200 700 700 HOH HOH A . L 7 HOH 201 701 701 HOH HOH A . L 7 HOH 202 702 702 HOH HOH A . L 7 HOH 203 703 703 HOH HOH A . L 7 HOH 204 704 704 HOH HOH A . L 7 HOH 205 705 705 HOH HOH A . L 7 HOH 206 706 706 HOH HOH A . L 7 HOH 207 707 707 HOH HOH A . L 7 HOH 208 708 708 HOH HOH A . L 7 HOH 209 709 709 HOH HOH A . L 7 HOH 210 710 710 HOH HOH A . L 7 HOH 211 711 711 HOH HOH A . L 7 HOH 212 712 712 HOH HOH A . L 7 HOH 213 713 713 HOH HOH A . L 7 HOH 214 714 714 HOH HOH A . L 7 HOH 215 715 715 HOH HOH A . L 7 HOH 216 716 716 HOH HOH A . L 7 HOH 217 717 717 HOH HOH A . L 7 HOH 218 718 718 HOH HOH A . L 7 HOH 219 719 719 HOH HOH A . L 7 HOH 220 720 720 HOH HOH A . L 7 HOH 221 721 721 HOH HOH A . L 7 HOH 222 722 722 HOH HOH A . L 7 HOH 223 723 723 HOH HOH A . L 7 HOH 224 724 724 HOH HOH A . L 7 HOH 225 725 725 HOH HOH A . L 7 HOH 226 726 726 HOH HOH A . L 7 HOH 227 727 727 HOH HOH A . L 7 HOH 228 728 728 HOH HOH A . L 7 HOH 229 729 729 HOH HOH A . L 7 HOH 230 730 730 HOH HOH A . L 7 HOH 231 731 731 HOH HOH A . L 7 HOH 232 732 732 HOH HOH A . L 7 HOH 233 733 733 HOH HOH A . L 7 HOH 234 734 734 HOH HOH A . L 7 HOH 235 735 735 HOH HOH A . L 7 HOH 236 736 736 HOH HOH A . L 7 HOH 237 737 737 HOH HOH A . L 7 HOH 238 738 738 HOH HOH A . L 7 HOH 239 739 739 HOH HOH A . L 7 HOH 240 740 740 HOH HOH A . L 7 HOH 241 741 741 HOH HOH A . L 7 HOH 242 742 742 HOH HOH A . L 7 HOH 243 743 743 HOH HOH A . L 7 HOH 244 744 744 HOH HOH A . L 7 HOH 245 745 745 HOH HOH A . L 7 HOH 246 746 746 HOH HOH A . L 7 HOH 247 747 747 HOH HOH A . L 7 HOH 248 748 748 HOH HOH A . L 7 HOH 249 749 749 HOH HOH A . L 7 HOH 250 750 750 HOH HOH A . L 7 HOH 251 751 751 HOH HOH A . L 7 HOH 252 752 752 HOH HOH A . L 7 HOH 253 753 753 HOH HOH A . L 7 HOH 254 754 754 HOH HOH A . L 7 HOH 255 755 755 HOH HOH A . L 7 HOH 256 756 756 HOH HOH A . L 7 HOH 257 757 757 HOH HOH A . L 7 HOH 258 758 758 HOH HOH A . L 7 HOH 259 759 759 HOH HOH A . L 7 HOH 260 760 760 HOH HOH A . L 7 HOH 261 761 761 HOH HOH A . L 7 HOH 262 762 762 HOH HOH A . L 7 HOH 263 763 763 HOH HOH A . L 7 HOH 264 764 764 HOH HOH A . L 7 HOH 265 765 765 HOH HOH A . L 7 HOH 266 766 766 HOH HOH A . L 7 HOH 267 767 767 HOH HOH A . L 7 HOH 268 768 768 HOH HOH A . L 7 HOH 269 769 769 HOH HOH A . L 7 HOH 270 770 770 HOH HOH A . L 7 HOH 271 771 771 HOH HOH A . L 7 HOH 272 772 772 HOH HOH A . L 7 HOH 273 773 773 HOH HOH A . L 7 HOH 274 774 774 HOH HOH A . L 7 HOH 275 775 775 HOH HOH A . L 7 HOH 276 776 776 HOH HOH A . L 7 HOH 277 777 777 HOH HOH A . L 7 HOH 278 778 778 HOH HOH A . L 7 HOH 279 779 779 HOH HOH A . L 7 HOH 280 780 780 HOH HOH A . L 7 HOH 281 781 781 HOH HOH A . L 7 HOH 282 782 782 HOH HOH A . L 7 HOH 283 783 783 HOH HOH A . L 7 HOH 284 784 784 HOH HOH A . L 7 HOH 285 785 785 HOH HOH A . L 7 HOH 286 786 786 HOH HOH A . L 7 HOH 287 787 787 HOH HOH A . L 7 HOH 288 788 788 HOH HOH A . L 7 HOH 289 789 789 HOH HOH A . L 7 HOH 290 790 790 HOH HOH A . L 7 HOH 291 791 791 HOH HOH A . L 7 HOH 292 792 792 HOH HOH A . L 7 HOH 293 793 793 HOH HOH A . L 7 HOH 294 794 794 HOH HOH A . L 7 HOH 295 795 795 HOH HOH A . L 7 HOH 296 796 796 HOH HOH A . L 7 HOH 297 797 797 HOH HOH A . L 7 HOH 298 798 798 HOH HOH A . L 7 HOH 299 799 799 HOH HOH A . L 7 HOH 300 800 800 HOH HOH A . L 7 HOH 301 801 801 HOH HOH A . L 7 HOH 302 802 802 HOH HOH A . L 7 HOH 303 803 803 HOH HOH A . L 7 HOH 304 804 804 HOH HOH A . L 7 HOH 305 805 805 HOH HOH A . L 7 HOH 306 806 806 HOH HOH A . L 7 HOH 307 807 807 HOH HOH A . L 7 HOH 308 808 808 HOH HOH A . L 7 HOH 309 809 809 HOH HOH A . L 7 HOH 310 810 810 HOH HOH A . L 7 HOH 311 811 811 HOH HOH A . L 7 HOH 312 812 812 HOH HOH A . L 7 HOH 313 813 813 HOH HOH A . L 7 HOH 314 814 814 HOH HOH A . L 7 HOH 315 815 815 HOH HOH A . L 7 HOH 316 816 816 HOH HOH A . L 7 HOH 317 817 817 HOH HOH A . L 7 HOH 318 818 818 HOH HOH A . L 7 HOH 319 819 819 HOH HOH A . L 7 HOH 320 820 820 HOH HOH A . L 7 HOH 321 821 821 HOH HOH A . L 7 HOH 322 822 822 HOH HOH A . L 7 HOH 323 823 823 HOH HOH A . L 7 HOH 324 824 824 HOH HOH A . L 7 HOH 325 825 825 HOH HOH A . L 7 HOH 326 826 826 HOH HOH A . L 7 HOH 327 827 827 HOH HOH A . L 7 HOH 328 828 828 HOH HOH A . L 7 HOH 329 829 829 HOH HOH A . L 7 HOH 330 830 830 HOH HOH A . L 7 HOH 331 831 831 HOH HOH A . L 7 HOH 332 832 832 HOH HOH A . L 7 HOH 333 833 833 HOH HOH A . L 7 HOH 334 834 834 HOH HOH A . L 7 HOH 335 835 835 HOH HOH A . L 7 HOH 336 836 836 HOH HOH A . L 7 HOH 337 837 837 HOH HOH A . L 7 HOH 338 838 838 HOH HOH A . L 7 HOH 339 839 839 HOH HOH A . L 7 HOH 340 840 840 HOH HOH A . L 7 HOH 341 841 841 HOH HOH A . L 7 HOH 342 842 842 HOH HOH A . L 7 HOH 343 843 843 HOH HOH A . L 7 HOH 344 844 844 HOH HOH A . L 7 HOH 345 845 845 HOH HOH A . L 7 HOH 346 846 846 HOH HOH A . L 7 HOH 347 847 847 HOH HOH A . L 7 HOH 348 848 848 HOH HOH A . L 7 HOH 349 849 849 HOH HOH A . L 7 HOH 350 850 850 HOH HOH A . L 7 HOH 351 851 851 HOH HOH A . L 7 HOH 352 852 852 HOH HOH A . L 7 HOH 353 853 853 HOH HOH A . L 7 HOH 354 854 854 HOH HOH A . L 7 HOH 355 855 855 HOH HOH A . L 7 HOH 356 856 856 HOH HOH A . L 7 HOH 357 857 857 HOH HOH A . L 7 HOH 358 858 858 HOH HOH A . L 7 HOH 359 859 859 HOH HOH A . L 7 HOH 360 860 860 HOH HOH A . L 7 HOH 361 861 861 HOH HOH A . L 7 HOH 362 862 862 HOH HOH A . L 7 HOH 363 863 863 HOH HOH A . L 7 HOH 364 864 864 HOH HOH A . L 7 HOH 365 865 865 HOH HOH A . L 7 HOH 366 866 866 HOH HOH A . L 7 HOH 367 867 867 HOH HOH A . L 7 HOH 368 868 868 HOH HOH A . L 7 HOH 369 869 869 HOH HOH A . L 7 HOH 370 870 870 HOH HOH A . L 7 HOH 371 871 871 HOH HOH A . L 7 HOH 372 872 872 HOH HOH A . L 7 HOH 373 873 873 HOH HOH A . L 7 HOH 374 874 874 HOH HOH A . L 7 HOH 375 875 875 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 3W52 _cell.length_a 54.254 _cell.length_b 66.727 _cell.length_c 99.487 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3W52 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3W52 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.94 _exptl_crystal.density_percent_sol 58.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details ;50mM NaCl, 20mM Tris(pH7.5), 125 micro-M thiophosphorylated adenosine hexanucleotide, 30%(w/v) PEG3350, 0.2M Li2SO4, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2012-03-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9732 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13B1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9732 # _reflns.entry_id 3W52 _reflns.observed_criterion_sigma_I 3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.76 _reflns.number_obs 36392 _reflns.number_all 36527 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.76 _reflns_shell.d_res_low 1.82 _reflns_shell.percent_possible_all 94.0 _reflns_shell.Rmerge_I_obs 0.337 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.6 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3384 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3W52 _refine.ls_number_reflns_obs 35526 _refine.ls_number_reflns_all 36527 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25 _refine.ls_d_res_high 1.76 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.171 _refine.ls_R_factor_all 0.171 _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free 0.196 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1762 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 1ak0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3W52 _refine_analyze.Luzzati_coordinate_error_obs 0.16 _refine_analyze.Luzzati_sigma_a_obs 0.06 _refine_analyze.Luzzati_d_res_low_obs 5.0 _refine_analyze.Luzzati_coordinate_error_free 0.20 _refine_analyze.Luzzati_sigma_a_free 0.10 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2051 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 123 _refine_hist.number_atoms_solvent 375 _refine_hist.number_atoms_total 2549 _refine_hist.d_res_high 1.76 _refine_hist.d_res_low 25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id c_angle_deg 2.0 ? ? ? ? 'X-RAY DIFFRACTION' c_bond_d 0.020 ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.76 _refine_ls_shell.d_res_low 1.82 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.200 _refine_ls_shell.percent_reflns_obs 89.0 _refine_ls_shell.R_factor_R_free 0.246 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 156 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 3204 _refine_ls_shell.redundancy_reflns_obs ? # _database_PDB_matrix.entry_id 3W52 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3W52 _struct.title 'Zinc-dependent bifunctional nuclease' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3W52 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'mostly alpha-helical, DNA, RNA, nuclease, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 5 ? I N N 6 ? J N N 6 ? K N N 6 ? L N N 7 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ENDO2_ARATH _struct_ref.pdbx_db_accession Q9C9G4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;WGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPDACSYQYNRDCKDESGE KGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSN IIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCTKKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRL PIVYQRLAQGGVRLAATLNRIFG ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3W52 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 263 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9C9G4 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 290 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 263 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3W52 HIS A 264 ? UNP Q9C9G4 ? ? 'expression tag' 264 1 1 3W52 HIS A 265 ? UNP Q9C9G4 ? ? 'expression tag' 265 2 1 3W52 HIS A 266 ? UNP Q9C9G4 ? ? 'expression tag' 266 3 1 3W52 HIS A 267 ? UNP Q9C9G4 ? ? 'expression tag' 267 4 1 3W52 HIS A 268 ? UNP Q9C9G4 ? ? 'expression tag' 268 5 1 3W52 HIS A 269 ? UNP Q9C9G4 ? ? 'expression tag' 269 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 2 ? THR A 15 ? GLY A 2 THR A 15 1 ? 14 HELX_P HELX_P2 2 ASP A 18 ? LEU A 29 ? ASP A 18 LEU A 29 1 ? 12 HELX_P HELX_P3 3 PRO A 30 ? GLU A 34 ? PRO A 30 GLU A 34 5 ? 5 HELX_P HELX_P4 4 ASP A 36 ? CYS A 41 ? ASP A 36 CYS A 41 5 ? 6 HELX_P HELX_P5 5 LEU A 42 ? LYS A 48 ? LEU A 42 LYS A 48 5 ? 7 HELX_P HELX_P6 6 TYR A 51 ? TYR A 59 ? TYR A 51 TYR A 59 5 ? 9 HELX_P HELX_P7 7 GLN A 69 ? CYS A 74 ? GLN A 69 CYS A 74 1 ? 6 HELX_P HELX_P8 8 CYS A 84 ? LEU A 97 ? CYS A 84 LEU A 97 1 ? 14 HELX_P HELX_P9 9 ASN A 110 ? ILE A 125 ? ASN A 110 ILE A 125 1 ? 16 HELX_P HELX_P10 10 HIS A 126 ? LEU A 129 ? HIS A 126 LEU A 129 5 ? 4 HELX_P HELX_P11 11 SER A 135 ? LYS A 137 ? SER A 135 LYS A 137 5 ? 3 HELX_P HELX_P12 12 LEU A 153 ? SER A 159 ? LEU A 153 SER A 159 1 ? 7 HELX_P HELX_P13 13 SER A 159 ? LEU A 169 ? SER A 159 LEU A 169 1 ? 11 HELX_P HELX_P14 14 ALA A 173 ? GLU A 188 ? ALA A 173 GLU A 188 1 ? 16 HELX_P HELX_P15 15 TRP A 189 ? THR A 198 ? TRP A 189 THR A 198 1 ? 10 HELX_P HELX_P16 16 CYS A 205 ? TRP A 220 ? CYS A 205 TRP A 220 1 ? 16 HELX_P HELX_P17 17 GLU A 232 ? GLY A 263 ? GLU A 232 GLY A 263 1 ? 32 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 10 SG ? ? ? 1_555 A CYS 41 SG ? ? A CYS 10 A CYS 41 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf2 disulf ? ? A CYS 66 SG ? ? ? 1_555 A CYS 218 SG ? ? A CYS 66 A CYS 218 1_555 ? ? ? ? ? ? ? 2.114 ? ? disulf3 disulf ? ? A CYS 74 SG ? ? ? 1_555 A CYS 84 SG ? ? A CYS 74 A CYS 84 1_555 ? ? ? ? ? ? ? 2.101 ? ? disulf4 disulf ? ? A CYS 199 SG ? ? ? 1_555 A CYS 205 SG ? ? A CYS 199 A CYS 205 1_555 ? ? ? ? ? ? ? 2.077 ? ? covale1 covale one ? A ASN 91 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 91 B NAG 1 1_555 ? ? ? ? ? ? ? 1.459 ? N-Glycosylation covale2 covale one ? A ASN 110 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 110 C NAG 1 1_555 ? ? ? ? ? ? ? 1.447 ? N-Glycosylation covale3 covale one ? A ASN 184 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 184 D NAG 1 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.376 ? ? covale5 covale both ? B NAG . O4 ? ? ? 1_555 B BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale7 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? D NAG 1 D NAG 2 1_555 ? ? ? ? ? ? ? 1.384 ? ? metalc1 metalc ? ? A TRP 1 N ? ? ? 1_555 H ZN . ZN ? ? A TRP 1 A ZN 311 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc2 metalc ? ? A TRP 1 O ? ? ? 1_555 H ZN . ZN ? ? A TRP 1 A ZN 311 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc3 metalc ? ? A HIS 6 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 6 A ZN 311 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc4 metalc ? ? A ASP 45 OD1 ? ? ? 1_555 F ZN . ZN ? ? A ASP 45 A ZN 309 1_555 ? ? ? ? ? ? ? 2.502 ? ? metalc5 metalc ? ? A HIS 58 ND1 ? ? ? 1_555 F ZN . ZN ? ? A HIS 58 A ZN 309 1_555 ? ? ? ? ? ? ? 2.167 ? ? metalc6 metalc ? ? A HIS 120 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 120 A ZN 309 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc7 metalc ? ? A ASP 124 OD2 ? ? ? 1_555 F ZN . ZN ? ? A ASP 124 A ZN 309 1_555 ? ? ? ? ? ? ? 2.092 ? ? metalc8 metalc ? ? A ASP 124 OD1 ? ? ? 1_555 H ZN . ZN ? ? A ASP 124 A ZN 311 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc9 metalc ? ? A HIS 130 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 130 A ZN 310 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc10 metalc ? ? A HIS 154 NE2 ? ? ? 1_555 G ZN . ZN ? ? A HIS 154 A ZN 310 1_555 ? ? ? ? ? ? ? 2.147 ? ? metalc11 metalc ? ? A ASP 158 OD2 ? ? ? 1_555 G ZN . ZN ? ? A ASP 158 A ZN 310 1_555 ? ? ? ? ? ? ? 2.130 ? ? metalc12 metalc ? ? A ASP 158 OD1 ? ? ? 1_555 G ZN . ZN ? ? A ASP 158 A ZN 310 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc13 metalc ? ? F ZN . ZN ? ? ? 1_555 I SO4 . O1 ? ? A ZN 309 A SO4 312 1_555 ? ? ? ? ? ? ? 2.113 ? ? metalc14 metalc ? ? F ZN . ZN ? ? ? 1_555 I SO4 . O2 ? ? A ZN 309 A SO4 312 1_555 ? ? ? ? ? ? ? 2.480 ? ? metalc15 metalc ? ? G ZN . ZN ? ? ? 1_555 I SO4 . O3 ? ? A ZN 310 A SO4 312 1_555 ? ? ? ? ? ? ? 2.095 ? ? metalc16 metalc ? ? G ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 310 A HOH 501 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc17 metalc ? ? H ZN . ZN ? ? ? 1_555 I SO4 . O1 ? ? A ZN 311 A SO4 312 1_555 ? ? ? ? ? ? ? 2.005 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 O ? A TRP 1 ? A TRP 1 ? 1_555 77.5 ? 2 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 116.1 ? 3 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 91.8 ? 4 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 OD1 ? A ASP 124 ? A ASP 124 ? 1_555 90.3 ? 5 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 OD1 ? A ASP 124 ? A ASP 124 ? 1_555 167.7 ? 6 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 OD1 ? A ASP 124 ? A ASP 124 ? 1_555 92.5 ? 7 N ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 120.5 ? 8 O ? A TRP 1 ? A TRP 1 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 91.1 ? 9 NE2 ? A HIS 6 ? A HIS 6 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 122.6 ? 10 OD1 ? A ASP 124 ? A ASP 124 ? 1_555 ZN ? H ZN . ? A ZN 311 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 96.2 ? 11 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 ND1 ? A HIS 58 ? A HIS 58 ? 1_555 85.6 ? 12 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 81.3 ? 13 ND1 ? A HIS 58 ? A HIS 58 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 101.1 ? 14 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 OD2 ? A ASP 124 ? A ASP 124 ? 1_555 173.9 ? 15 ND1 ? A HIS 58 ? A HIS 58 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 OD2 ? A ASP 124 ? A ASP 124 ? 1_555 97.2 ? 16 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 OD2 ? A ASP 124 ? A ASP 124 ? 1_555 92.8 ? 17 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 85.3 ? 18 ND1 ? A HIS 58 ? A HIS 58 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 157.9 ? 19 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 97.4 ? 20 OD2 ? A ASP 124 ? A ASP 124 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O1 ? I SO4 . ? A SO4 312 ? 1_555 93.9 ? 21 OD1 ? A ASP 45 ? A ASP 45 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O2 ? I SO4 . ? A SO4 312 ? 1_555 83.2 ? 22 ND1 ? A HIS 58 ? A HIS 58 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O2 ? I SO4 . ? A SO4 312 ? 1_555 95.8 ? 23 NE2 ? A HIS 120 ? A HIS 120 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O2 ? I SO4 . ? A SO4 312 ? 1_555 156.0 ? 24 OD2 ? A ASP 124 ? A ASP 124 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O2 ? I SO4 . ? A SO4 312 ? 1_555 101.9 ? 25 O1 ? I SO4 . ? A SO4 312 ? 1_555 ZN ? F ZN . ? A ZN 309 ? 1_555 O2 ? I SO4 . ? A SO4 312 ? 1_555 63.1 ? 26 NE2 ? A HIS 130 ? A HIS 130 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 91.6 ? 27 NE2 ? A HIS 130 ? A HIS 130 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 OD2 ? A ASP 158 ? A ASP 158 ? 1_555 143.5 ? 28 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 OD2 ? A ASP 158 ? A ASP 158 ? 1_555 90.5 ? 29 NE2 ? A HIS 130 ? A HIS 130 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 OD1 ? A ASP 158 ? A ASP 158 ? 1_555 87.8 ? 30 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 OD1 ? A ASP 158 ? A ASP 158 ? 1_555 92.1 ? 31 OD2 ? A ASP 158 ? A ASP 158 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 OD1 ? A ASP 158 ? A ASP 158 ? 1_555 55.7 ? 32 NE2 ? A HIS 130 ? A HIS 130 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O3 ? I SO4 . ? A SO4 312 ? 1_555 91.3 ? 33 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O3 ? I SO4 . ? A SO4 312 ? 1_555 174.4 ? 34 OD2 ? A ASP 158 ? A ASP 158 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O3 ? I SO4 . ? A SO4 312 ? 1_555 89.9 ? 35 OD1 ? A ASP 158 ? A ASP 158 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O3 ? I SO4 . ? A SO4 312 ? 1_555 92.8 ? 36 NE2 ? A HIS 130 ? A HIS 130 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O ? L HOH . ? A HOH 501 ? 1_555 115.6 ? 37 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O ? L HOH . ? A HOH 501 ? 1_555 89.4 ? 38 OD2 ? A ASP 158 ? A ASP 158 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O ? L HOH . ? A HOH 501 ? 1_555 100.8 ? 39 OD1 ? A ASP 158 ? A ASP 158 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O ? L HOH . ? A HOH 501 ? 1_555 156.5 ? 40 O3 ? I SO4 . ? A SO4 312 ? 1_555 ZN ? G ZN . ? A ZN 310 ? 1_555 O ? L HOH . ? A HOH 501 ? 1_555 85.0 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG B . ? ASN A 91 ? NAG B 1 ? 1_555 ASN A 91 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG C . ? ASN A 110 ? NAG C 1 ? 1_555 ASN A 110 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 NAG D . ? ASN A 184 ? NAG D 1 ? 1_555 ASN A 184 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 4 CYS A 10 ? CYS A 41 ? CYS A 10 ? 1_555 CYS A 41 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 66 ? CYS A 218 ? CYS A 66 ? 1_555 CYS A 218 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 74 ? CYS A 84 ? CYS A 74 ? 1_555 CYS A 84 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 199 ? CYS A 205 ? CYS A 199 ? 1_555 CYS A 205 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel B 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 60 ? THR A 62 ? ILE A 60 THR A 62 A 2 VAL A 131 ? TYR A 133 ? VAL A 131 TYR A 133 B 1 ARG A 149 ? ASN A 152 ? ARG A 149 ASN A 152 B 2 GLU A 143 ? TRP A 146 ? GLU A 143 TRP A 146 B 3 THR A 230 ? LEU A 231 ? THR A 230 LEU A 231 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 62 ? N THR A 62 O SER A 132 ? O SER A 132 B 1 2 O ALA A 151 ? O ALA A 151 N VAL A 144 ? N VAL A 144 B 2 3 N HIS A 145 ? N HIS A 145 O LEU A 231 ? O LEU A 231 # _pdbx_entry_details.entry_id 3W52 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CB A SER 172 ? ? O A HOH 820 ? ? 1.92 2 1 O6 B BMA 3 ? ? O A HOH 635 ? ? 2.00 3 1 O A HOH 813 ? ? O A HOH 814 ? ? 2.03 4 1 O A HOH 681 ? ? O A HOH 820 ? ? 2.09 5 1 O A HOH 797 ? ? O A HOH 829 ? ? 2.13 6 1 O3 B BMA 3 ? ? O A HOH 524 ? ? 2.16 7 1 O A HOH 533 ? ? O A HOH 815 ? ? 2.17 8 1 O A HOH 666 ? ? O A HOH 865 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 66 ? ? -97.78 37.59 2 1 TYR A 147 ? ? 51.63 -125.52 3 1 SER A 159 ? ? -132.87 -46.14 4 1 THR A 203 ? ? -126.49 -70.77 5 1 GLU A 232 ? ? -145.80 -135.48 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 184 A ASN 184 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 110 A ASN 110 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 91 A ASN 91 ? ASN 'GLYCOSYLATION SITE' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 101 ? A THR 101 2 1 Y 1 A ALA 102 ? A ALA 102 3 1 Y 1 A ALA 103 ? A ALA 103 4 1 Y 1 A SER 104 ? A SER 104 5 1 Y 1 A SER 105 ? A SER 105 6 1 Y 1 A GLN 106 ? A GLN 106 7 1 Y 1 A SER 107 ? A SER 107 8 1 Y 1 A HIS 264 ? A HIS 264 9 1 Y 1 A HIS 265 ? A HIS 265 10 1 Y 1 A HIS 266 ? A HIS 266 11 1 Y 1 A HIS 267 ? A HIS 267 12 1 Y 1 A HIS 268 ? A HIS 268 13 1 Y 1 A HIS 269 ? A HIS 269 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADE N9 N Y N 1 ADE C8 C Y N 2 ADE N7 N Y N 3 ADE C5 C Y N 4 ADE C6 C Y N 5 ADE N6 N N N 6 ADE N1 N Y N 7 ADE C2 C Y N 8 ADE N3 N Y N 9 ADE C4 C Y N 10 ADE HN9 H N N 11 ADE H8 H N N 12 ADE HN61 H N N 13 ADE HN62 H N N 14 ADE H2 H N N 15 ALA N N N N 16 ALA CA C N S 17 ALA C C N N 18 ALA O O N N 19 ALA CB C N N 20 ALA OXT O N N 21 ALA H H N N 22 ALA H2 H N N 23 ALA HA H N N 24 ALA HB1 H N N 25 ALA HB2 H N N 26 ALA HB3 H N N 27 ALA HXT H N N 28 ARG N N N N 29 ARG CA C N S 30 ARG C C N N 31 ARG O O N N 32 ARG CB C N N 33 ARG CG C N N 34 ARG CD C N N 35 ARG NE N N N 36 ARG CZ C N N 37 ARG NH1 N N N 38 ARG NH2 N N N 39 ARG OXT O N N 40 ARG H H N N 41 ARG H2 H N N 42 ARG HA H N N 43 ARG HB2 H N N 44 ARG HB3 H N N 45 ARG HG2 H N N 46 ARG HG3 H N N 47 ARG HD2 H N N 48 ARG HD3 H N N 49 ARG HE H N N 50 ARG HH11 H N N 51 ARG HH12 H N N 52 ARG HH21 H N N 53 ARG HH22 H N N 54 ARG HXT H N N 55 ASN N N N N 56 ASN CA C N S 57 ASN C C N N 58 ASN O O N N 59 ASN CB C N N 60 ASN CG C N N 61 ASN OD1 O N N 62 ASN ND2 N N N 63 ASN OXT O N N 64 ASN H H N N 65 ASN H2 H N N 66 ASN HA H N N 67 ASN HB2 H N N 68 ASN HB3 H N N 69 ASN HD21 H N N 70 ASN HD22 H N N 71 ASN HXT H N N 72 ASP N N N N 73 ASP CA C N S 74 ASP C C N N 75 ASP O O N N 76 ASP CB C N N 77 ASP CG C N N 78 ASP OD1 O N N 79 ASP OD2 O N N 80 ASP OXT O N N 81 ASP H H N N 82 ASP H2 H N N 83 ASP HA H N N 84 ASP HB2 H N N 85 ASP HB3 H N N 86 ASP HD2 H N N 87 ASP HXT H N N 88 BMA C1 C N R 89 BMA C2 C N S 90 BMA C3 C N S 91 BMA C4 C N S 92 BMA C5 C N R 93 BMA C6 C N N 94 BMA O1 O N N 95 BMA O2 O N N 96 BMA O3 O N N 97 BMA O4 O N N 98 BMA O5 O N N 99 BMA O6 O N N 100 BMA H1 H N N 101 BMA H2 H N N 102 BMA H3 H N N 103 BMA H4 H N N 104 BMA H5 H N N 105 BMA H61 H N N 106 BMA H62 H N N 107 BMA HO1 H N N 108 BMA HO2 H N N 109 BMA HO3 H N N 110 BMA HO4 H N N 111 BMA HO6 H N N 112 CYS N N N N 113 CYS CA C N R 114 CYS C C N N 115 CYS O O N N 116 CYS CB C N N 117 CYS SG S N N 118 CYS OXT O N N 119 CYS H H N N 120 CYS H2 H N N 121 CYS HA H N N 122 CYS HB2 H N N 123 CYS HB3 H N N 124 CYS HG H N N 125 CYS HXT H N N 126 GLN N N N N 127 GLN CA C N S 128 GLN C C N N 129 GLN O O N N 130 GLN CB C N N 131 GLN CG C N N 132 GLN CD C N N 133 GLN OE1 O N N 134 GLN NE2 N N N 135 GLN OXT O N N 136 GLN H H N N 137 GLN H2 H N N 138 GLN HA H N N 139 GLN HB2 H N N 140 GLN HB3 H N N 141 GLN HG2 H N N 142 GLN HG3 H N N 143 GLN HE21 H N N 144 GLN HE22 H N N 145 GLN HXT H N N 146 GLU N N N N 147 GLU CA C N S 148 GLU C C N N 149 GLU O O N N 150 GLU CB C N N 151 GLU CG C N N 152 GLU CD C N N 153 GLU OE1 O N N 154 GLU OE2 O N N 155 GLU OXT O N N 156 GLU H H N N 157 GLU H2 H N N 158 GLU HA H N N 159 GLU HB2 H N N 160 GLU HB3 H N N 161 GLU HG2 H N N 162 GLU HG3 H N N 163 GLU HE2 H N N 164 GLU HXT H N N 165 GLY N N N N 166 GLY CA C N N 167 GLY C C N N 168 GLY O O N N 169 GLY OXT O N N 170 GLY H H N N 171 GLY H2 H N N 172 GLY HA2 H N N 173 GLY HA3 H N N 174 GLY HXT H N N 175 HIS N N N N 176 HIS CA C N S 177 HIS C C N N 178 HIS O O N N 179 HIS CB C N N 180 HIS CG C Y N 181 HIS ND1 N Y N 182 HIS CD2 C Y N 183 HIS CE1 C Y N 184 HIS NE2 N Y N 185 HIS OXT O N N 186 HIS H H N N 187 HIS H2 H N N 188 HIS HA H N N 189 HIS HB2 H N N 190 HIS HB3 H N N 191 HIS HD1 H N N 192 HIS HD2 H N N 193 HIS HE1 H N N 194 HIS HE2 H N N 195 HIS HXT H N N 196 HOH O O N N 197 HOH H1 H N N 198 HOH H2 H N N 199 ILE N N N N 200 ILE CA C N S 201 ILE C C N N 202 ILE O O N N 203 ILE CB C N S 204 ILE CG1 C N N 205 ILE CG2 C N N 206 ILE CD1 C N N 207 ILE OXT O N N 208 ILE H H N N 209 ILE H2 H N N 210 ILE HA H N N 211 ILE HB H N N 212 ILE HG12 H N N 213 ILE HG13 H N N 214 ILE HG21 H N N 215 ILE HG22 H N N 216 ILE HG23 H N N 217 ILE HD11 H N N 218 ILE HD12 H N N 219 ILE HD13 H N N 220 ILE HXT H N N 221 LEU N N N N 222 LEU CA C N S 223 LEU C C N N 224 LEU O O N N 225 LEU CB C N N 226 LEU CG C N N 227 LEU CD1 C N N 228 LEU CD2 C N N 229 LEU OXT O N N 230 LEU H H N N 231 LEU H2 H N N 232 LEU HA H N N 233 LEU HB2 H N N 234 LEU HB3 H N N 235 LEU HG H N N 236 LEU HD11 H N N 237 LEU HD12 H N N 238 LEU HD13 H N N 239 LEU HD21 H N N 240 LEU HD22 H N N 241 LEU HD23 H N N 242 LEU HXT H N N 243 LYS N N N N 244 LYS CA C N S 245 LYS C C N N 246 LYS O O N N 247 LYS CB C N N 248 LYS CG C N N 249 LYS CD C N N 250 LYS CE C N N 251 LYS NZ N N N 252 LYS OXT O N N 253 LYS H H N N 254 LYS H2 H N N 255 LYS HA H N N 256 LYS HB2 H N N 257 LYS HB3 H N N 258 LYS HG2 H N N 259 LYS HG3 H N N 260 LYS HD2 H N N 261 LYS HD3 H N N 262 LYS HE2 H N N 263 LYS HE3 H N N 264 LYS HZ1 H N N 265 LYS HZ2 H N N 266 LYS HZ3 H N N 267 LYS HXT H N N 268 MET N N N N 269 MET CA C N S 270 MET C C N N 271 MET O O N N 272 MET CB C N N 273 MET CG C N N 274 MET SD S N N 275 MET CE C N N 276 MET OXT O N N 277 MET H H N N 278 MET H2 H N N 279 MET HA H N N 280 MET HB2 H N N 281 MET HB3 H N N 282 MET HG2 H N N 283 MET HG3 H N N 284 MET HE1 H N N 285 MET HE2 H N N 286 MET HE3 H N N 287 MET HXT H N N 288 NAG C1 C N R 289 NAG C2 C N R 290 NAG C3 C N R 291 NAG C4 C N S 292 NAG C5 C N R 293 NAG C6 C N N 294 NAG C7 C N N 295 NAG C8 C N N 296 NAG N2 N N N 297 NAG O1 O N N 298 NAG O3 O N N 299 NAG O4 O N N 300 NAG O5 O N N 301 NAG O6 O N N 302 NAG O7 O N N 303 NAG H1 H N N 304 NAG H2 H N N 305 NAG H3 H N N 306 NAG H4 H N N 307 NAG H5 H N N 308 NAG H61 H N N 309 NAG H62 H N N 310 NAG H81 H N N 311 NAG H82 H N N 312 NAG H83 H N N 313 NAG HN2 H N N 314 NAG HO1 H N N 315 NAG HO3 H N N 316 NAG HO4 H N N 317 NAG HO6 H N N 318 PHE N N N N 319 PHE CA C N S 320 PHE C C N N 321 PHE O O N N 322 PHE CB C N N 323 PHE CG C Y N 324 PHE CD1 C Y N 325 PHE CD2 C Y N 326 PHE CE1 C Y N 327 PHE CE2 C Y N 328 PHE CZ C Y N 329 PHE OXT O N N 330 PHE H H N N 331 PHE H2 H N N 332 PHE HA H N N 333 PHE HB2 H N N 334 PHE HB3 H N N 335 PHE HD1 H N N 336 PHE HD2 H N N 337 PHE HE1 H N N 338 PHE HE2 H N N 339 PHE HZ H N N 340 PHE HXT H N N 341 PRO N N N N 342 PRO CA C N S 343 PRO C C N N 344 PRO O O N N 345 PRO CB C N N 346 PRO CG C N N 347 PRO CD C N N 348 PRO OXT O N N 349 PRO H H N N 350 PRO HA H N N 351 PRO HB2 H N N 352 PRO HB3 H N N 353 PRO HG2 H N N 354 PRO HG3 H N N 355 PRO HD2 H N N 356 PRO HD3 H N N 357 PRO HXT H N N 358 SER N N N N 359 SER CA C N S 360 SER C C N N 361 SER O O N N 362 SER CB C N N 363 SER OG O N N 364 SER OXT O N N 365 SER H H N N 366 SER H2 H N N 367 SER HA H N N 368 SER HB2 H N N 369 SER HB3 H N N 370 SER HG H N N 371 SER HXT H N N 372 SO4 S S N N 373 SO4 O1 O N N 374 SO4 O2 O N N 375 SO4 O3 O N N 376 SO4 O4 O N N 377 THR N N N N 378 THR CA C N S 379 THR C C N N 380 THR O O N N 381 THR CB C N R 382 THR OG1 O N N 383 THR CG2 C N N 384 THR OXT O N N 385 THR H H N N 386 THR H2 H N N 387 THR HA H N N 388 THR HB H N N 389 THR HG1 H N N 390 THR HG21 H N N 391 THR HG22 H N N 392 THR HG23 H N N 393 THR HXT H N N 394 TRP N N N N 395 TRP CA C N S 396 TRP C C N N 397 TRP O O N N 398 TRP CB C N N 399 TRP CG C Y N 400 TRP CD1 C Y N 401 TRP CD2 C Y N 402 TRP NE1 N Y N 403 TRP CE2 C Y N 404 TRP CE3 C Y N 405 TRP CZ2 C Y N 406 TRP CZ3 C Y N 407 TRP CH2 C Y N 408 TRP OXT O N N 409 TRP H H N N 410 TRP H2 H N N 411 TRP HA H N N 412 TRP HB2 H N N 413 TRP HB3 H N N 414 TRP HD1 H N N 415 TRP HE1 H N N 416 TRP HE3 H N N 417 TRP HZ2 H N N 418 TRP HZ3 H N N 419 TRP HH2 H N N 420 TRP HXT H N N 421 TYR N N N N 422 TYR CA C N S 423 TYR C C N N 424 TYR O O N N 425 TYR CB C N N 426 TYR CG C Y N 427 TYR CD1 C Y N 428 TYR CD2 C Y N 429 TYR CE1 C Y N 430 TYR CE2 C Y N 431 TYR CZ C Y N 432 TYR OH O N N 433 TYR OXT O N N 434 TYR H H N N 435 TYR H2 H N N 436 TYR HA H N N 437 TYR HB2 H N N 438 TYR HB3 H N N 439 TYR HD1 H N N 440 TYR HD2 H N N 441 TYR HE1 H N N 442 TYR HE2 H N N 443 TYR HH H N N 444 TYR HXT H N N 445 VAL N N N N 446 VAL CA C N S 447 VAL C C N N 448 VAL O O N N 449 VAL CB C N N 450 VAL CG1 C N N 451 VAL CG2 C N N 452 VAL OXT O N N 453 VAL H H N N 454 VAL H2 H N N 455 VAL HA H N N 456 VAL HB H N N 457 VAL HG11 H N N 458 VAL HG12 H N N 459 VAL HG13 H N N 460 VAL HG21 H N N 461 VAL HG22 H N N 462 VAL HG23 H N N 463 VAL HXT H N N 464 ZN ZN ZN N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADE N9 C8 sing Y N 1 ADE N9 C4 sing Y N 2 ADE N9 HN9 sing N N 3 ADE C8 N7 doub Y N 4 ADE C8 H8 sing N N 5 ADE N7 C5 sing Y N 6 ADE C5 C6 sing Y N 7 ADE C5 C4 doub Y N 8 ADE C6 N6 sing N N 9 ADE C6 N1 doub Y N 10 ADE N6 HN61 sing N N 11 ADE N6 HN62 sing N N 12 ADE N1 C2 sing Y N 13 ADE C2 N3 doub Y N 14 ADE C2 H2 sing N N 15 ADE N3 C4 sing Y N 16 ALA N CA sing N N 17 ALA N H sing N N 18 ALA N H2 sing N N 19 ALA CA C sing N N 20 ALA CA CB sing N N 21 ALA CA HA sing N N 22 ALA C O doub N N 23 ALA C OXT sing N N 24 ALA CB HB1 sing N N 25 ALA CB HB2 sing N N 26 ALA CB HB3 sing N N 27 ALA OXT HXT sing N N 28 ARG N CA sing N N 29 ARG N H sing N N 30 ARG N H2 sing N N 31 ARG CA C sing N N 32 ARG CA CB sing N N 33 ARG CA HA sing N N 34 ARG C O doub N N 35 ARG C OXT sing N N 36 ARG CB CG sing N N 37 ARG CB HB2 sing N N 38 ARG CB HB3 sing N N 39 ARG CG CD sing N N 40 ARG CG HG2 sing N N 41 ARG CG HG3 sing N N 42 ARG CD NE sing N N 43 ARG CD HD2 sing N N 44 ARG CD HD3 sing N N 45 ARG NE CZ sing N N 46 ARG NE HE sing N N 47 ARG CZ NH1 sing N N 48 ARG CZ NH2 doub N N 49 ARG NH1 HH11 sing N N 50 ARG NH1 HH12 sing N N 51 ARG NH2 HH21 sing N N 52 ARG NH2 HH22 sing N N 53 ARG OXT HXT sing N N 54 ASN N CA sing N N 55 ASN N H sing N N 56 ASN N H2 sing N N 57 ASN CA C sing N N 58 ASN CA CB sing N N 59 ASN CA HA sing N N 60 ASN C O doub N N 61 ASN C OXT sing N N 62 ASN CB CG sing N N 63 ASN CB HB2 sing N N 64 ASN CB HB3 sing N N 65 ASN CG OD1 doub N N 66 ASN CG ND2 sing N N 67 ASN ND2 HD21 sing N N 68 ASN ND2 HD22 sing N N 69 ASN OXT HXT sing N N 70 ASP N CA sing N N 71 ASP N H sing N N 72 ASP N H2 sing N N 73 ASP CA C sing N N 74 ASP CA CB sing N N 75 ASP CA HA sing N N 76 ASP C O doub N N 77 ASP C OXT sing N N 78 ASP CB CG sing N N 79 ASP CB HB2 sing N N 80 ASP CB HB3 sing N N 81 ASP CG OD1 doub N N 82 ASP CG OD2 sing N N 83 ASP OD2 HD2 sing N N 84 ASP OXT HXT sing N N 85 BMA C1 C2 sing N N 86 BMA C1 O1 sing N N 87 BMA C1 O5 sing N N 88 BMA C1 H1 sing N N 89 BMA C2 C3 sing N N 90 BMA C2 O2 sing N N 91 BMA C2 H2 sing N N 92 BMA C3 C4 sing N N 93 BMA C3 O3 sing N N 94 BMA C3 H3 sing N N 95 BMA C4 C5 sing N N 96 BMA C4 O4 sing N N 97 BMA C4 H4 sing N N 98 BMA C5 C6 sing N N 99 BMA C5 O5 sing N N 100 BMA C5 H5 sing N N 101 BMA C6 O6 sing N N 102 BMA C6 H61 sing N N 103 BMA C6 H62 sing N N 104 BMA O1 HO1 sing N N 105 BMA O2 HO2 sing N N 106 BMA O3 HO3 sing N N 107 BMA O4 HO4 sing N N 108 BMA O6 HO6 sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 NAG C1 C2 sing N N 277 NAG C1 O1 sing N N 278 NAG C1 O5 sing N N 279 NAG C1 H1 sing N N 280 NAG C2 C3 sing N N 281 NAG C2 N2 sing N N 282 NAG C2 H2 sing N N 283 NAG C3 C4 sing N N 284 NAG C3 O3 sing N N 285 NAG C3 H3 sing N N 286 NAG C4 C5 sing N N 287 NAG C4 O4 sing N N 288 NAG C4 H4 sing N N 289 NAG C5 C6 sing N N 290 NAG C5 O5 sing N N 291 NAG C5 H5 sing N N 292 NAG C6 O6 sing N N 293 NAG C6 H61 sing N N 294 NAG C6 H62 sing N N 295 NAG C7 C8 sing N N 296 NAG C7 N2 sing N N 297 NAG C7 O7 doub N N 298 NAG C8 H81 sing N N 299 NAG C8 H82 sing N N 300 NAG C8 H83 sing N N 301 NAG N2 HN2 sing N N 302 NAG O1 HO1 sing N N 303 NAG O3 HO3 sing N N 304 NAG O4 HO4 sing N N 305 NAG O6 HO6 sing N N 306 PHE N CA sing N N 307 PHE N H sing N N 308 PHE N H2 sing N N 309 PHE CA C sing N N 310 PHE CA CB sing N N 311 PHE CA HA sing N N 312 PHE C O doub N N 313 PHE C OXT sing N N 314 PHE CB CG sing N N 315 PHE CB HB2 sing N N 316 PHE CB HB3 sing N N 317 PHE CG CD1 doub Y N 318 PHE CG CD2 sing Y N 319 PHE CD1 CE1 sing Y N 320 PHE CD1 HD1 sing N N 321 PHE CD2 CE2 doub Y N 322 PHE CD2 HD2 sing N N 323 PHE CE1 CZ doub Y N 324 PHE CE1 HE1 sing N N 325 PHE CE2 CZ sing Y N 326 PHE CE2 HE2 sing N N 327 PHE CZ HZ sing N N 328 PHE OXT HXT sing N N 329 PRO N CA sing N N 330 PRO N CD sing N N 331 PRO N H sing N N 332 PRO CA C sing N N 333 PRO CA CB sing N N 334 PRO CA HA sing N N 335 PRO C O doub N N 336 PRO C OXT sing N N 337 PRO CB CG sing N N 338 PRO CB HB2 sing N N 339 PRO CB HB3 sing N N 340 PRO CG CD sing N N 341 PRO CG HG2 sing N N 342 PRO CG HG3 sing N N 343 PRO CD HD2 sing N N 344 PRO CD HD3 sing N N 345 PRO OXT HXT sing N N 346 SER N CA sing N N 347 SER N H sing N N 348 SER N H2 sing N N 349 SER CA C sing N N 350 SER CA CB sing N N 351 SER CA HA sing N N 352 SER C O doub N N 353 SER C OXT sing N N 354 SER CB OG sing N N 355 SER CB HB2 sing N N 356 SER CB HB3 sing N N 357 SER OG HG sing N N 358 SER OXT HXT sing N N 359 SO4 S O1 doub N N 360 SO4 S O2 doub N N 361 SO4 S O3 sing N N 362 SO4 S O4 sing N N 363 THR N CA sing N N 364 THR N H sing N N 365 THR N H2 sing N N 366 THR CA C sing N N 367 THR CA CB sing N N 368 THR CA HA sing N N 369 THR C O doub N N 370 THR C OXT sing N N 371 THR CB OG1 sing N N 372 THR CB CG2 sing N N 373 THR CB HB sing N N 374 THR OG1 HG1 sing N N 375 THR CG2 HG21 sing N N 376 THR CG2 HG22 sing N N 377 THR CG2 HG23 sing N N 378 THR OXT HXT sing N N 379 TRP N CA sing N N 380 TRP N H sing N N 381 TRP N H2 sing N N 382 TRP CA C sing N N 383 TRP CA CB sing N N 384 TRP CA HA sing N N 385 TRP C O doub N N 386 TRP C OXT sing N N 387 TRP CB CG sing N N 388 TRP CB HB2 sing N N 389 TRP CB HB3 sing N N 390 TRP CG CD1 doub Y N 391 TRP CG CD2 sing Y N 392 TRP CD1 NE1 sing Y N 393 TRP CD1 HD1 sing N N 394 TRP CD2 CE2 doub Y N 395 TRP CD2 CE3 sing Y N 396 TRP NE1 CE2 sing Y N 397 TRP NE1 HE1 sing N N 398 TRP CE2 CZ2 sing Y N 399 TRP CE3 CZ3 doub Y N 400 TRP CE3 HE3 sing N N 401 TRP CZ2 CH2 doub Y N 402 TRP CZ2 HZ2 sing N N 403 TRP CZ3 CH2 sing Y N 404 TRP CZ3 HZ3 sing N N 405 TRP CH2 HH2 sing N N 406 TRP OXT HXT sing N N 407 TYR N CA sing N N 408 TYR N H sing N N 409 TYR N H2 sing N N 410 TYR CA C sing N N 411 TYR CA CB sing N N 412 TYR CA HA sing N N 413 TYR C O doub N N 414 TYR C OXT sing N N 415 TYR CB CG sing N N 416 TYR CB HB2 sing N N 417 TYR CB HB3 sing N N 418 TYR CG CD1 doub Y N 419 TYR CG CD2 sing Y N 420 TYR CD1 CE1 sing Y N 421 TYR CD1 HD1 sing N N 422 TYR CD2 CE2 doub Y N 423 TYR CD2 HD2 sing N N 424 TYR CE1 CZ doub Y N 425 TYR CE1 HE1 sing N N 426 TYR CE2 CZ sing Y N 427 TYR CE2 HE2 sing N N 428 TYR CZ OH sing N N 429 TYR OH HH sing N N 430 TYR OXT HXT sing N N 431 VAL N CA sing N N 432 VAL N H sing N N 433 VAL N H2 sing N N 434 VAL CA C sing N N 435 VAL CA CB sing N N 436 VAL CA HA sing N N 437 VAL C O doub N N 438 VAL C OXT sing N N 439 VAL CB CG1 sing N N 440 VAL CB CG2 sing N N 441 VAL CB HB sing N N 442 VAL CG1 HG11 sing N N 443 VAL CG1 HG12 sing N N 444 VAL CG1 HG13 sing N N 445 VAL CG2 HG21 sing N N 446 VAL CG2 HG22 sing N N 447 VAL CG2 HG23 sing N N 448 VAL OXT HXT sing N N 449 # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 BMA 3 n 3 NAG 1 n 3 NAG 2 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AK0 _pdbx_initial_refinement_model.details 'PDB entry 1ak0' # _atom_sites.entry_id 3W52 _atom_sites.fract_transf_matrix[1][1] 0.018432 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014986 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010052 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_