HEADER HYDROLASE 15-FEB-13 3W6M TITLE CONTRIBUTION OF DISULFIDE BOND TOWARD THERMOSTABILITY IN TITLE 2 HYPERTHERMOSTABLE ENDOCELLULASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 458AA LONG HYPOTHETICAL ENDO-1,4-BETA-GLUCANASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDEUS 34-410; COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH1171; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYPERTHERMOPHILIC, DISULFIDE BOND, TIM BARREL, GLYCOSYL HYDROLASE, KEYWDS 2 HYDROLIZAITON, MEMBRANE-BOUND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.-W.KIM,K.ISHIKAWA REVDAT 3 22-NOV-17 3W6M 1 REMARK REVDAT 2 07-AUG-13 3W6M 1 JRNL REVDAT 1 29-MAY-13 3W6M 0 JRNL AUTH H.-W.KIM,K.ISHIKAWA JRNL TITL THE ROLE OF DISULFIDE BOND IN HYPERTHERMOPHILIC JRNL TITL 2 ENDOCELLULASE JRNL REF EXTREMOPHILES V. 17 593 2013 JRNL REFN ISSN 1431-0651 JRNL PMID 23624891 JRNL DOI 10.1007/S00792-013-0542-8 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 88537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5394 - 6.0426 1.00 2967 146 0.2007 0.2172 REMARK 3 2 6.0426 - 4.8003 1.00 2874 182 0.1642 0.1793 REMARK 3 3 4.8003 - 4.1947 1.00 2859 149 0.1333 0.1494 REMARK 3 4 4.1947 - 3.8117 1.00 2871 155 0.1336 0.1700 REMARK 3 5 3.8117 - 3.5388 1.00 2845 153 0.1450 0.1496 REMARK 3 6 3.5388 - 3.3303 1.00 2858 135 0.1488 0.1753 REMARK 3 7 3.3303 - 3.1637 1.00 2810 163 0.1490 0.1767 REMARK 3 8 3.1637 - 3.0260 1.00 2833 156 0.1639 0.1811 REMARK 3 9 3.0260 - 2.9096 1.00 2837 153 0.1604 0.2124 REMARK 3 10 2.9096 - 2.8092 1.00 2825 160 0.1605 0.1879 REMARK 3 11 2.8092 - 2.7214 1.00 2823 147 0.1594 0.1978 REMARK 3 12 2.7214 - 2.6437 1.00 2824 138 0.1596 0.2127 REMARK 3 13 2.6437 - 2.5741 1.00 2789 163 0.1666 0.2298 REMARK 3 14 2.5741 - 2.5113 1.00 2815 151 0.1606 0.1960 REMARK 3 15 2.5113 - 2.4542 1.00 2836 121 0.1538 0.1959 REMARK 3 16 2.4542 - 2.4020 1.00 2845 151 0.1532 0.1719 REMARK 3 17 2.4020 - 2.3540 1.00 2764 147 0.1567 0.2118 REMARK 3 18 2.3540 - 2.3096 1.00 2796 151 0.1559 0.1842 REMARK 3 19 2.3096 - 2.2683 1.00 2828 127 0.1519 0.2104 REMARK 3 20 2.2683 - 2.2299 0.99 2833 151 0.1433 0.1929 REMARK 3 21 2.2299 - 2.1939 0.99 2750 152 0.1480 0.1723 REMARK 3 22 2.1939 - 2.1602 0.99 2752 160 0.1457 0.2073 REMARK 3 23 2.1602 - 2.1284 0.99 2803 153 0.1542 0.1985 REMARK 3 24 2.1284 - 2.0984 0.99 2778 148 0.1546 0.2076 REMARK 3 25 2.0984 - 2.0701 0.99 2798 152 0.1489 0.2127 REMARK 3 26 2.0701 - 2.0432 0.99 2785 128 0.1497 0.2020 REMARK 3 27 2.0432 - 2.0177 0.99 2748 153 0.1476 0.2001 REMARK 3 28 2.0177 - 1.9934 0.99 2810 149 0.1551 0.1840 REMARK 3 29 1.9934 - 1.9702 0.99 2763 153 0.1610 0.2270 REMARK 3 30 1.9702 - 1.9481 0.85 2365 106 0.1527 0.2270 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 40.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02750 REMARK 3 B22 (A**2) : 0.07030 REMARK 3 B33 (A**2) : -0.09790 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04260 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 9564 REMARK 3 ANGLE : 1.083 13038 REMARK 3 CHIRALITY : 0.080 1308 REMARK 3 PLANARITY : 0.005 1662 REMARK 3 DIHEDRAL : 12.450 3357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3W6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000095951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88558 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.948 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.30500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM PHOSPHATE, 0.1M MES REMARK 280 BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.11800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.33750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.11800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.33750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 843 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 410 O REMARK 470 ASP B 410 O REMARK 470 ASP C 410 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH A 884 1.87 REMARK 500 O HOH A 697 O HOH A 791 1.92 REMARK 500 O HOH B 785 O HOH B 847 1.92 REMARK 500 O HOH C 610 O HOH C 726 1.94 REMARK 500 O HOH C 746 O HOH C 749 1.96 REMARK 500 O HOH A 863 O HOH C 699 2.03 REMARK 500 NH1 ARG B 44 OE1 GLU B 58 2.04 REMARK 500 O HOH B 752 O HOH B 868 2.04 REMARK 500 NZ LYS C 142 O HOH C 619 2.05 REMARK 500 O HOH B 778 O HOH B 878 2.06 REMARK 500 O HOH C 594 O HOH C 614 2.07 REMARK 500 O HIS B 161 O HOH B 709 2.07 REMARK 500 NZ LYS C 281 O HOH C 749 2.07 REMARK 500 O1 GOL B 505 O HOH B 708 2.09 REMARK 500 O HIS A 161 O HOH A 614 2.11 REMARK 500 O HOH C 542 O HOH C 628 2.13 REMARK 500 O HOH B 736 O HOH B 874 2.13 REMARK 500 O HOH C 574 O HOH C 601 2.14 REMARK 500 OE2 GLU B 169 O HOH B 870 2.14 REMARK 500 OD2 ASP A 321 O HOH A 660 2.14 REMARK 500 O HOH A 878 O HOH B 865 2.15 REMARK 500 O HOH A 641 O HOH A 725 2.15 REMARK 500 N HIS B 161 O HOH B 709 2.15 REMARK 500 NE ARG C 44 OE1 GLU C 58 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 254 -166.56 -105.07 REMARK 500 THR A 257 -81.86 -115.34 REMARK 500 PHE A 327 -28.88 -155.47 REMARK 500 ASP A 382 46.39 -80.40 REMARK 500 THR A 395 -44.96 -133.67 REMARK 500 THR B 254 -164.91 -106.68 REMARK 500 THR B 257 -78.40 -117.25 REMARK 500 PHE B 327 -26.58 -149.12 REMARK 500 THR B 395 -50.86 -131.12 REMARK 500 THR C 254 -169.51 -107.29 REMARK 500 THR C 257 -80.05 -112.45 REMARK 500 ALA C 312 23.21 -72.55 REMARK 500 PHE C 327 -30.59 -154.99 REMARK 500 ASP C 382 49.08 -86.75 REMARK 500 TRP C 394 17.76 58.86 REMARK 500 THR C 395 -48.73 -130.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZUN RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CELLOBIOSE REMARK 900 RELATED ID: 3AXX RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CELLOBIOSE REMARK 900 RELATED ID: 3QHN RELATED DB: PDB REMARK 900 THE MUTANT E201A COMPLEXED WITH CELLOTETRAOSE REMARK 900 RELATED ID: 3QHM RELATED DB: PDB REMARK 900 THE MUTANT E342A COMPLEXED WITH CELLOTETRAOSE REMARK 900 RELATED ID: 3QHO RELATED DB: PDB REMARK 900 THE MUTANT Y299F COMPLEXED WITH CELLOTETRAOSE REMARK 900 RELATED ID: 3W6L RELATED DB: PDB DBREF 3W6M A 34 410 UNP O58925 O58925_PYRHO 34 410 DBREF 3W6M B 34 410 UNP O58925 O58925_PYRHO 34 410 DBREF 3W6M C 34 410 UNP O58925 O58925_PYRHO 34 410 SEQADV 3W6M CYS A 74 UNP O58925 PRO 74 ENGINEERED MUTATION SEQADV 3W6M LYS A 289 UNP O58925 ARG 289 CONFLICT SEQADV 3W6M CYS B 74 UNP O58925 PRO 74 ENGINEERED MUTATION SEQADV 3W6M LYS B 289 UNP O58925 ARG 289 CONFLICT SEQADV 3W6M CYS C 74 UNP O58925 PRO 74 ENGINEERED MUTATION SEQADV 3W6M LYS C 289 UNP O58925 ARG 289 CONFLICT SEQRES 1 A 377 GLN THR PRO THR GLY ILE TYR TYR GLU VAL ARG GLY ASP SEQRES 2 A 377 THR ILE TYR MET ILE ASN VAL THR SER GLY GLU GLU THR SEQRES 3 A 377 PRO ILE HIS LEU PHE GLY VAL ASN TRP PHE GLY PHE GLU SEQRES 4 A 377 THR CYS ASN HIS VAL VAL HIS GLY LEU TRP LYS ARG ASN SEQRES 5 A 377 TRP GLU ASP MET LEU LEU GLN ILE LYS SER LEU GLY PHE SEQRES 6 A 377 ASN ALA ILE ARG LEU PRO PHE CYS THR GLU SER VAL LYS SEQRES 7 A 377 PRO GLY THR GLN PRO ILE GLY ILE ASP TYR SER LYS ASN SEQRES 8 A 377 PRO ASP LEU ARG GLY LEU ASP SER LEU GLN ILE MET GLU SEQRES 9 A 377 LYS ILE ILE LYS LYS ALA GLY ASP LEU GLY ILE PHE VAL SEQRES 10 A 377 LEU LEU ASP TYR HIS ARG ILE GLY CYS THR HIS ILE GLU SEQRES 11 A 377 PRO LEU TRP TYR THR GLU ASP PHE SER GLU GLU ASP PHE SEQRES 12 A 377 ILE ASN THR TRP ILE GLU VAL ALA LYS ARG PHE GLY LYS SEQRES 13 A 377 TYR TRP ASN VAL ILE GLY ALA ASP LEU LYS ASN GLU PRO SEQRES 14 A 377 HIS SER VAL THR SER PRO PRO ALA ALA TYR THR ASP GLY SEQRES 15 A 377 THR GLY ALA THR TRP GLY MET GLY ASN PRO ALA THR ASP SEQRES 16 A 377 TRP ASN LEU ALA ALA GLU ARG ILE GLY LYS ALA ILE LEU SEQRES 17 A 377 LYS VAL ALA PRO HIS TRP LEU ILE PHE VAL GLU GLY THR SEQRES 18 A 377 GLN PHE THR ASN PRO LYS THR ASP SER SER TYR LYS TRP SEQRES 19 A 377 GLY TYR ASN ALA TRP TRP GLY GLY ASN LEU MET ALA VAL SEQRES 20 A 377 LYS ASP TYR PRO VAL ASN LEU PRO LYS ASN LYS LEU VAL SEQRES 21 A 377 TYR SER PRO HIS VAL TYR GLY PRO ASP VAL TYR ASN GLN SEQRES 22 A 377 PRO TYR PHE GLY PRO ALA LYS GLY PHE PRO ASP ASN LEU SEQRES 23 A 377 PRO ASP ILE TRP TYR HIS HIS PHE GLY TYR VAL LYS LEU SEQRES 24 A 377 GLU LEU GLY TYR SER VAL VAL ILE GLY GLU PHE GLY GLY SEQRES 25 A 377 LYS TYR GLY HIS GLY GLY ASP PRO ARG ASP VAL ILE TRP SEQRES 26 A 377 GLN ASN LYS LEU VAL ASP TRP MET ILE GLU ASN LYS PHE SEQRES 27 A 377 CYS ASP PHE PHE TYR TRP SER TRP ASN PRO ASP SER GLY SEQRES 28 A 377 ASP THR GLY GLY ILE LEU GLN ASP ASP TRP THR THR ILE SEQRES 29 A 377 TRP GLU ASP LYS TYR ASN ASN LEU LYS ARG LEU MET ASP SEQRES 1 B 377 GLN THR PRO THR GLY ILE TYR TYR GLU VAL ARG GLY ASP SEQRES 2 B 377 THR ILE TYR MET ILE ASN VAL THR SER GLY GLU GLU THR SEQRES 3 B 377 PRO ILE HIS LEU PHE GLY VAL ASN TRP PHE GLY PHE GLU SEQRES 4 B 377 THR CYS ASN HIS VAL VAL HIS GLY LEU TRP LYS ARG ASN SEQRES 5 B 377 TRP GLU ASP MET LEU LEU GLN ILE LYS SER LEU GLY PHE SEQRES 6 B 377 ASN ALA ILE ARG LEU PRO PHE CYS THR GLU SER VAL LYS SEQRES 7 B 377 PRO GLY THR GLN PRO ILE GLY ILE ASP TYR SER LYS ASN SEQRES 8 B 377 PRO ASP LEU ARG GLY LEU ASP SER LEU GLN ILE MET GLU SEQRES 9 B 377 LYS ILE ILE LYS LYS ALA GLY ASP LEU GLY ILE PHE VAL SEQRES 10 B 377 LEU LEU ASP TYR HIS ARG ILE GLY CYS THR HIS ILE GLU SEQRES 11 B 377 PRO LEU TRP TYR THR GLU ASP PHE SER GLU GLU ASP PHE SEQRES 12 B 377 ILE ASN THR TRP ILE GLU VAL ALA LYS ARG PHE GLY LYS SEQRES 13 B 377 TYR TRP ASN VAL ILE GLY ALA ASP LEU LYS ASN GLU PRO SEQRES 14 B 377 HIS SER VAL THR SER PRO PRO ALA ALA TYR THR ASP GLY SEQRES 15 B 377 THR GLY ALA THR TRP GLY MET GLY ASN PRO ALA THR ASP SEQRES 16 B 377 TRP ASN LEU ALA ALA GLU ARG ILE GLY LYS ALA ILE LEU SEQRES 17 B 377 LYS VAL ALA PRO HIS TRP LEU ILE PHE VAL GLU GLY THR SEQRES 18 B 377 GLN PHE THR ASN PRO LYS THR ASP SER SER TYR LYS TRP SEQRES 19 B 377 GLY TYR ASN ALA TRP TRP GLY GLY ASN LEU MET ALA VAL SEQRES 20 B 377 LYS ASP TYR PRO VAL ASN LEU PRO LYS ASN LYS LEU VAL SEQRES 21 B 377 TYR SER PRO HIS VAL TYR GLY PRO ASP VAL TYR ASN GLN SEQRES 22 B 377 PRO TYR PHE GLY PRO ALA LYS GLY PHE PRO ASP ASN LEU SEQRES 23 B 377 PRO ASP ILE TRP TYR HIS HIS PHE GLY TYR VAL LYS LEU SEQRES 24 B 377 GLU LEU GLY TYR SER VAL VAL ILE GLY GLU PHE GLY GLY SEQRES 25 B 377 LYS TYR GLY HIS GLY GLY ASP PRO ARG ASP VAL ILE TRP SEQRES 26 B 377 GLN ASN LYS LEU VAL ASP TRP MET ILE GLU ASN LYS PHE SEQRES 27 B 377 CYS ASP PHE PHE TYR TRP SER TRP ASN PRO ASP SER GLY SEQRES 28 B 377 ASP THR GLY GLY ILE LEU GLN ASP ASP TRP THR THR ILE SEQRES 29 B 377 TRP GLU ASP LYS TYR ASN ASN LEU LYS ARG LEU MET ASP SEQRES 1 C 377 GLN THR PRO THR GLY ILE TYR TYR GLU VAL ARG GLY ASP SEQRES 2 C 377 THR ILE TYR MET ILE ASN VAL THR SER GLY GLU GLU THR SEQRES 3 C 377 PRO ILE HIS LEU PHE GLY VAL ASN TRP PHE GLY PHE GLU SEQRES 4 C 377 THR CYS ASN HIS VAL VAL HIS GLY LEU TRP LYS ARG ASN SEQRES 5 C 377 TRP GLU ASP MET LEU LEU GLN ILE LYS SER LEU GLY PHE SEQRES 6 C 377 ASN ALA ILE ARG LEU PRO PHE CYS THR GLU SER VAL LYS SEQRES 7 C 377 PRO GLY THR GLN PRO ILE GLY ILE ASP TYR SER LYS ASN SEQRES 8 C 377 PRO ASP LEU ARG GLY LEU ASP SER LEU GLN ILE MET GLU SEQRES 9 C 377 LYS ILE ILE LYS LYS ALA GLY ASP LEU GLY ILE PHE VAL SEQRES 10 C 377 LEU LEU ASP TYR HIS ARG ILE GLY CYS THR HIS ILE GLU SEQRES 11 C 377 PRO LEU TRP TYR THR GLU ASP PHE SER GLU GLU ASP PHE SEQRES 12 C 377 ILE ASN THR TRP ILE GLU VAL ALA LYS ARG PHE GLY LYS SEQRES 13 C 377 TYR TRP ASN VAL ILE GLY ALA ASP LEU LYS ASN GLU PRO SEQRES 14 C 377 HIS SER VAL THR SER PRO PRO ALA ALA TYR THR ASP GLY SEQRES 15 C 377 THR GLY ALA THR TRP GLY MET GLY ASN PRO ALA THR ASP SEQRES 16 C 377 TRP ASN LEU ALA ALA GLU ARG ILE GLY LYS ALA ILE LEU SEQRES 17 C 377 LYS VAL ALA PRO HIS TRP LEU ILE PHE VAL GLU GLY THR SEQRES 18 C 377 GLN PHE THR ASN PRO LYS THR ASP SER SER TYR LYS TRP SEQRES 19 C 377 GLY TYR ASN ALA TRP TRP GLY GLY ASN LEU MET ALA VAL SEQRES 20 C 377 LYS ASP TYR PRO VAL ASN LEU PRO LYS ASN LYS LEU VAL SEQRES 21 C 377 TYR SER PRO HIS VAL TYR GLY PRO ASP VAL TYR ASN GLN SEQRES 22 C 377 PRO TYR PHE GLY PRO ALA LYS GLY PHE PRO ASP ASN LEU SEQRES 23 C 377 PRO ASP ILE TRP TYR HIS HIS PHE GLY TYR VAL LYS LEU SEQRES 24 C 377 GLU LEU GLY TYR SER VAL VAL ILE GLY GLU PHE GLY GLY SEQRES 25 C 377 LYS TYR GLY HIS GLY GLY ASP PRO ARG ASP VAL ILE TRP SEQRES 26 C 377 GLN ASN LYS LEU VAL ASP TRP MET ILE GLU ASN LYS PHE SEQRES 27 C 377 CYS ASP PHE PHE TYR TRP SER TRP ASN PRO ASP SER GLY SEQRES 28 C 377 ASP THR GLY GLY ILE LEU GLN ASP ASP TRP THR THR ILE SEQRES 29 C 377 TRP GLU ASP LYS TYR ASN ASN LEU LYS ARG LEU MET ASP HET GOL A 501 6 HET GOL B 501 6 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 6(C3 H8 O3) FORMUL 10 HOH *877(H2 O) HELIX 1 1 ASN A 85 LEU A 96 1 12 HELIX 2 2 GLU A 108 LYS A 111 5 4 HELIX 3 3 ASN A 124 ARG A 128 5 5 HELIX 4 4 ASP A 131 LEU A 146 1 16 HELIX 5 5 SER A 172 GLY A 188 1 17 HELIX 6 6 PRO A 209 THR A 213 5 5 HELIX 7 7 ASP A 228 ALA A 244 1 17 HELIX 8 8 ASN A 258 SER A 263 1 6 HELIX 9 9 GLN A 306 GLY A 314 5 9 HELIX 10 10 ASN A 318 PHE A 327 1 10 HELIX 11 11 GLY A 328 GLU A 333 1 6 HELIX 12 12 PRO A 353 ASN A 369 1 17 HELIX 13 13 TRP A 398 LYS A 406 1 9 HELIX 14 14 ARG A 407 ASP A 410 5 4 HELIX 15 15 ASN B 85 LEU B 96 1 12 HELIX 16 16 GLU B 108 LYS B 111 5 4 HELIX 17 17 ASN B 124 ARG B 128 5 5 HELIX 18 18 ASP B 131 LEU B 146 1 16 HELIX 19 19 SER B 172 GLY B 188 1 17 HELIX 20 20 PRO B 209 ASP B 214 1 6 HELIX 21 21 ASP B 228 ALA B 244 1 17 HELIX 22 22 ASN B 258 SER B 264 1 7 HELIX 23 23 GLN B 306 GLY B 314 5 9 HELIX 24 24 ASN B 318 PHE B 327 1 10 HELIX 25 25 PHE B 327 GLU B 333 1 7 HELIX 26 26 PRO B 353 ASN B 369 1 17 HELIX 27 27 TRP B 398 LYS B 406 1 9 HELIX 28 28 ARG B 407 ASP B 410 5 4 HELIX 29 29 ASN C 85 LEU C 96 1 12 HELIX 30 30 GLU C 108 LYS C 111 5 4 HELIX 31 31 ASN C 124 ARG C 128 5 5 HELIX 32 32 ASP C 131 LEU C 146 1 16 HELIX 33 33 SER C 172 GLY C 188 1 17 HELIX 34 34 PRO C 209 THR C 213 5 5 HELIX 35 35 ASP C 228 ALA C 244 1 17 HELIX 36 36 ASN C 258 SER C 264 1 7 HELIX 37 37 LEU C 277 LYS C 281 5 5 HELIX 38 38 GLN C 306 GLY C 314 5 9 HELIX 39 39 ASN C 318 PHE C 327 1 10 HELIX 40 40 GLY C 328 GLU C 333 1 6 HELIX 41 41 PRO C 353 LYS C 370 1 18 HELIX 42 42 TRP C 398 ASP C 410 1 13 SHEET 1 A 3 ILE A 39 ARG A 44 0 SHEET 2 A 3 THR A 47 ASN A 52 -1 O TYR A 49 N GLU A 42 SHEET 3 A 3 GLU A 58 ILE A 61 -1 O ILE A 61 N ILE A 48 SHEET 1 B 7 LEU A 292 TYR A 294 0 SHEET 2 B 7 LEU A 248 VAL A 251 1 N VAL A 251 O VAL A 293 SHEET 3 B 7 VAL A 193 ASP A 197 1 N ALA A 196 O PHE A 250 SHEET 4 B 7 PHE A 149 ARG A 156 1 N LEU A 152 O ASP A 197 SHEET 5 B 7 ALA A 100 CYS A 106 1 N LEU A 103 O LEU A 151 SHEET 6 B 7 PHE A 64 ASN A 67 1 N VAL A 66 O ARG A 102 SHEET 7 B 7 PHE A 374 TYR A 376 1 O TYR A 376 N ASN A 67 SHEET 1 C 3 ILE B 39 ARG B 44 0 SHEET 2 C 3 THR B 47 ASN B 52 -1 O TYR B 49 N GLU B 42 SHEET 3 C 3 GLU B 58 ILE B 61 -1 O ILE B 61 N ILE B 48 SHEET 1 D 7 LEU B 292 TYR B 294 0 SHEET 2 D 7 LEU B 248 VAL B 251 1 N VAL B 251 O VAL B 293 SHEET 3 D 7 VAL B 193 ASP B 197 1 N ALA B 196 O PHE B 250 SHEET 4 D 7 PHE B 149 ARG B 156 1 N LEU B 152 O ASP B 197 SHEET 5 D 7 ALA B 100 CYS B 106 1 N LEU B 103 O LEU B 151 SHEET 6 D 7 PHE B 64 ASN B 67 1 N VAL B 66 O ARG B 102 SHEET 7 D 7 PHE B 374 TYR B 376 1 O TYR B 376 N GLY B 65 SHEET 1 E 3 ILE C 39 ARG C 44 0 SHEET 2 E 3 THR C 47 ASN C 52 -1 O TYR C 49 N GLU C 42 SHEET 3 E 3 GLU C 58 PRO C 60 -1 O THR C 59 N MET C 50 SHEET 1 F 7 LEU C 292 TYR C 294 0 SHEET 2 F 7 LEU C 248 VAL C 251 1 N ILE C 249 O VAL C 293 SHEET 3 F 7 VAL C 193 ASP C 197 1 N ALA C 196 O PHE C 250 SHEET 4 F 7 PHE C 149 ARG C 156 1 N LEU C 152 O ASP C 197 SHEET 5 F 7 ALA C 100 CYS C 106 1 N LEU C 103 O LEU C 151 SHEET 6 F 7 PHE C 64 ASN C 67 1 N VAL C 66 O ARG C 102 SHEET 7 F 7 PHE C 374 TYR C 376 1 O TYR C 376 N GLY C 65 SSBOND 1 CYS A 74 CYS A 159 1555 1555 2.06 SSBOND 2 CYS B 74 CYS B 159 1555 1555 2.08 SSBOND 3 CYS C 74 CYS C 159 1555 1555 2.04 CISPEP 1 PRO A 208 PRO A 209 0 3.40 CISPEP 2 PHE A 315 PRO A 316 0 2.41 CISPEP 3 TRP A 377 SER A 378 0 1.86 CISPEP 4 PRO B 208 PRO B 209 0 2.04 CISPEP 5 PHE B 315 PRO B 316 0 3.70 CISPEP 6 TRP B 377 SER B 378 0 3.09 CISPEP 7 PRO C 208 PRO C 209 0 4.74 CISPEP 8 PHE C 315 PRO C 316 0 3.72 CISPEP 9 TRP C 377 SER C 378 0 4.02 SITE 1 AC1 6 GLY A 221 MET A 222 ASN A 258 PRO A 259 SITE 2 AC1 6 HOH A 703 HOH A 876 SITE 1 AC2 6 TRP B 272 TRP B 273 VAL B 303 GOL B 503 SITE 2 AC2 6 HOH B 628 HOH B 693 SITE 1 AC3 6 ASP B 302 LYS B 346 GLY B 350 GLY B 351 SITE 2 AC3 6 ASP B 352 ASP B 385 SITE 1 AC4 5 TYR B 299 TRP B 377 ASP B 385 GOL B 501 SITE 2 AC4 5 GOL B 505 SITE 1 AC5 10 THR A 213 ASP A 214 PHE B 69 GLU B 72 SITE 2 AC5 10 ARG B 156 TRP B 377 GOL B 505 HOH B 626 SITE 3 AC5 10 HOH B 697 HOH B 708 SITE 1 AC6 8 ALA A 210 THR A 213 ASP A 214 GLY B 384 SITE 2 AC6 8 ASP B 385 GOL B 503 GOL B 504 HOH B 708 CRYST1 160.236 58.675 138.539 90.00 108.94 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006241 0.000000 0.002141 0.00000 SCALE2 0.000000 0.017043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007631 0.00000