data_3W6V # _entry.id 3W6V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3W6V pdb_00003w6v 10.2210/pdb3w6v/pdb NDB NA2272 ? ? RCSB RCSB095960 ? ? WWPDB D_1000095960 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3W6V _pdbx_database_status.recvd_initial_deposition_date 2013-02-22 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yao, M.D.' 1 'Ohtsuka, J.' 2 'Nagata, K.' 3 'Miyazono, K.' 4 'Ohnishi, Y.' 5 'Tanokura, M.' 6 # _citation.id primary _citation.title ;Complex Structure of the DNA-binding Domain of AdpA, the Global Transcription Factor in Streptomyces griseus, and a Target Duplex DNA Reveals the Structural Basis of Its Tolerant DNA Sequence Specificity ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 31019 _citation.page_last 31029 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24019524 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.473611 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yao, M.D.' 1 ? primary 'Ohtsuka, J.' 2 ? primary 'Nagata, K.' 3 ? primary 'Miyazono, K.' 4 ? primary 'Zhi, Y.' 5 ? primary 'Ohnishi, Y.' 6 ? primary 'Tanokura, M.' 7 ? # _cell.entry_id 3W6V _cell.length_a 76.510 _cell.length_b 100.640 _cell.length_c 100.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3W6V _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man AdpA 16743.789 1 ? ? 'DNA-binding domain, residues 215-340' ? 2 polymer syn ;DNA (5'-D(*CP*TP*GP*TP*GP*AP*AP*CP*CP*CP*GP*CP*CP*AP*AP*C)-3') ; 4828.146 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*AP*GP*GP*TP*TP*GP*GP*CP*GP*GP*GP*TP*TP*CP*AP*C)-3') ; 4970.213 1 ? ? ? ? 4 water nat water 18.015 9 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MGSSHHHHHHSSGLVPRGSHMGQERYLDRSLPEEIGSDPLAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTG SAPLQWLITQRVLQAQRLLETSDYSVDEVAGRCGFRSPVALRGHFRRQLGSSPAAYRAAYRARRPQG ; ;MGSSHHHHHHSSGLVPRGSHMGQERYLDRSLPEEIGSDPLAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTG SAPLQWLITQRVLQAQRLLETSDYSVDEVAGRCGFRSPVALRGHFRRQLGSSPAAYRAAYRARRPQG ; A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DG)(DT)(DG)(DA)(DA)(DC)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DC)' CTGTGAACCCGCCAAC B ? 3 polydeoxyribonucleotide no no '(DA)(DG)(DG)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DG)(DT)(DT)(DC)(DA)(DC)' AGGTTGGCGGGTTCAC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 GLY n 1 23 GLN n 1 24 GLU n 1 25 ARG n 1 26 TYR n 1 27 LEU n 1 28 ASP n 1 29 ARG n 1 30 SER n 1 31 LEU n 1 32 PRO n 1 33 GLU n 1 34 GLU n 1 35 ILE n 1 36 GLY n 1 37 SER n 1 38 ASP n 1 39 PRO n 1 40 LEU n 1 41 ALA n 1 42 GLU n 1 43 VAL n 1 44 VAL n 1 45 ALA n 1 46 TRP n 1 47 ALA n 1 48 LEU n 1 49 GLU n 1 50 HIS n 1 51 LEU n 1 52 HIS n 1 53 GLU n 1 54 GLN n 1 55 PHE n 1 56 ASP n 1 57 VAL n 1 58 GLU n 1 59 THR n 1 60 LEU n 1 61 ALA n 1 62 ALA n 1 63 ARG n 1 64 ALA n 1 65 TYR n 1 66 MET n 1 67 SER n 1 68 ARG n 1 69 ARG n 1 70 THR n 1 71 PHE n 1 72 ASP n 1 73 ARG n 1 74 ARG n 1 75 PHE n 1 76 ARG n 1 77 SER n 1 78 LEU n 1 79 THR n 1 80 GLY n 1 81 SER n 1 82 ALA n 1 83 PRO n 1 84 LEU n 1 85 GLN n 1 86 TRP n 1 87 LEU n 1 88 ILE n 1 89 THR n 1 90 GLN n 1 91 ARG n 1 92 VAL n 1 93 LEU n 1 94 GLN n 1 95 ALA n 1 96 GLN n 1 97 ARG n 1 98 LEU n 1 99 LEU n 1 100 GLU n 1 101 THR n 1 102 SER n 1 103 ASP n 1 104 TYR n 1 105 SER n 1 106 VAL n 1 107 ASP n 1 108 GLU n 1 109 VAL n 1 110 ALA n 1 111 GLY n 1 112 ARG n 1 113 CYS n 1 114 GLY n 1 115 PHE n 1 116 ARG n 1 117 SER n 1 118 PRO n 1 119 VAL n 1 120 ALA n 1 121 LEU n 1 122 ARG n 1 123 GLY n 1 124 HIS n 1 125 PHE n 1 126 ARG n 1 127 ARG n 1 128 GLN n 1 129 LEU n 1 130 GLY n 1 131 SER n 1 132 SER n 1 133 PRO n 1 134 ALA n 1 135 ALA n 1 136 TYR n 1 137 ARG n 1 138 ALA n 1 139 ALA n 1 140 TYR n 1 141 ARG n 1 142 ALA n 1 143 ARG n 1 144 ARG n 1 145 PRO n 1 146 GLN n 1 147 GLY n 2 1 DC n 2 2 DT n 2 3 DG n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DA n 2 8 DC n 2 9 DC n 2 10 DC n 2 11 DG n 2 12 DC n 2 13 DC n 2 14 DA n 2 15 DA n 2 16 DC n 3 1 DA n 3 2 DG n 3 3 DG n 3 4 DT n 3 5 DT n 3 6 DG n 3 7 DG n 3 8 DC n 3 9 DG n 3 10 DG n 3 11 DG n 3 12 DT n 3 13 DT n 3 14 DC n 3 15 DA n 3 16 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene adpA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces griseus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1911 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Q9S166_STRGR Q9S166 1 ;GQERYLDRSLPEEIGSDPLAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTGSAPLQWLITQRVLQAQRLLET SDYSVDEVAGRCGFRSPVALRGHFRRQLGSSPAAYRAAYRARRPQG ; 215 ? 2 PDB 3W6V 3W6V 2 ? ? ? 3 PDB 3W6V 3W6V 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3W6V A 22 ? 147 ? Q9S166 215 ? 340 ? 215 340 2 2 3W6V B 1 ? 16 ? 3W6V -3 ? 12 ? -3 12 3 3 3W6V C 1 ? 16 ? 3W6V -3 ? 12 ? -3 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3W6V MET A 1 ? UNP Q9S166 ? ? 'expression tag' 194 1 1 3W6V GLY A 2 ? UNP Q9S166 ? ? 'expression tag' 195 2 1 3W6V SER A 3 ? UNP Q9S166 ? ? 'expression tag' 196 3 1 3W6V SER A 4 ? UNP Q9S166 ? ? 'expression tag' 197 4 1 3W6V HIS A 5 ? UNP Q9S166 ? ? 'expression tag' 198 5 1 3W6V HIS A 6 ? UNP Q9S166 ? ? 'expression tag' 199 6 1 3W6V HIS A 7 ? UNP Q9S166 ? ? 'expression tag' 200 7 1 3W6V HIS A 8 ? UNP Q9S166 ? ? 'expression tag' 201 8 1 3W6V HIS A 9 ? UNP Q9S166 ? ? 'expression tag' 202 9 1 3W6V HIS A 10 ? UNP Q9S166 ? ? 'expression tag' 203 10 1 3W6V SER A 11 ? UNP Q9S166 ? ? 'expression tag' 204 11 1 3W6V SER A 12 ? UNP Q9S166 ? ? 'expression tag' 205 12 1 3W6V GLY A 13 ? UNP Q9S166 ? ? 'expression tag' 206 13 1 3W6V LEU A 14 ? UNP Q9S166 ? ? 'expression tag' 207 14 1 3W6V VAL A 15 ? UNP Q9S166 ? ? 'expression tag' 208 15 1 3W6V PRO A 16 ? UNP Q9S166 ? ? 'expression tag' 209 16 1 3W6V ARG A 17 ? UNP Q9S166 ? ? 'expression tag' 210 17 1 3W6V GLY A 18 ? UNP Q9S166 ? ? 'expression tag' 211 18 1 3W6V SER A 19 ? UNP Q9S166 ? ? 'expression tag' 212 19 1 3W6V HIS A 20 ? UNP Q9S166 ? ? 'expression tag' 213 20 1 3W6V MET A 21 ? UNP Q9S166 ? ? 'expression tag' 214 21 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3W6V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.66 _exptl_crystal.density_percent_sol 66.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.1 _exptl_crystal_grow.pdbx_details '0.1M sodium HEPES, 10%(v/v) 2-propanol, 16%(w/v) PEG4000, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.pdbx_collection_date 2010-03-07 _diffrn_detector.details diffraction # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NE3A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NE3A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0000 # _reflns.entry_id 3W6V _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.80 _reflns.number_obs 9885 _reflns.number_all 10045 _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.077 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.93 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.87 _reflns_shell.percent_possible_all 98.4 _reflns_shell.Rmerge_I_obs 0.077 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.93 _reflns_shell.pdbx_redundancy 5.4 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 10045 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3W6V _refine.ls_number_reflns_obs 8039 _refine.ls_number_reflns_all 8057 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.50 _refine.ls_d_res_high 2.95 _refine.ls_percent_reflns_obs 99.78 _refine.ls_R_factor_obs 0.23787 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23600 _refine.ls_R_factor_R_free 0.27830 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 399 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.926 _refine.correlation_coeff_Fo_to_Fc_free 0.890 _refine.B_iso_mean 66.487 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] -0.10 _refine.aniso_B[3][3] 0.10 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model '1D5Y, 1BL0' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.655 _refine.pdbx_overall_ESU_R_Free 0.367 _refine.overall_SU_ML 0.290 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 15.543 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 896 _refine_hist.pdbx_number_atoms_nucleic_acid 650 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 1555 _refine_hist.d_res_high 2.95 _refine_hist.d_res_low 19.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.021 ? 1644 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 0.881 2.445 ? 2359 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.454 5.000 ? 110 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.588 20.204 ? 49 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 21.403 15.000 ? 147 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 20.724 15.000 ? 17 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.053 0.200 ? 256 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1062 ? 'X-RAY DIFFRACTION' r_mcbond_it 0.443 1.500 ? 554 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.878 2.000 ? 882 ? 'X-RAY DIFFRACTION' r_scbond_it 1.166 3.000 ? 1090 ? 'X-RAY DIFFRACTION' r_scangle_it 2.053 4.500 ? 1477 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.950 _refine_ls_shell.d_res_low 3.025 _refine_ls_shell.number_reflns_R_work 569 _refine_ls_shell.R_factor_R_work 0.236 _refine_ls_shell.percent_reflns_obs 99.67 _refine_ls_shell.R_factor_R_free 0.278 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 27 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3W6V _struct.title 'Crystal structure of the DNA-binding domain of AdpA, the global transcriptional factor, in complex with a target DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3W6V _struct_keywords.pdbx_keywords 'TRANSCRIPTION ACTIVATOR/DNA' _struct_keywords.text ;H-T-H motif, sequence-specific DNA binding transcription factor activity, DNA-binding, intracellular, TRANSCRIPTION ACTIVATOR-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 38 ? HIS A 50 ? ASP A 231 HIS A 243 1 ? 13 HELX_P HELX_P2 2 ASP A 56 ? ARG A 63 ? ASP A 249 ARG A 256 1 ? 8 HELX_P HELX_P3 3 SER A 67 ? GLY A 80 ? SER A 260 GLY A 273 1 ? 14 HELX_P HELX_P4 4 ALA A 82 ? SER A 102 ? ALA A 275 SER A 295 1 ? 21 HELX_P HELX_P5 5 SER A 105 ? CYS A 113 ? SER A 298 CYS A 306 1 ? 9 HELX_P HELX_P6 6 SER A 117 ? GLY A 130 ? SER A 310 GLY A 323 1 ? 14 HELX_P HELX_P7 7 SER A 132 ? ARG A 144 ? SER A 325 ARG A 337 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 16 N3 ? ? B DG -1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 16 O2 ? ? B DG -1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 16 N4 ? ? B DG -1 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 15 N1 ? ? B DT 0 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 15 N6 ? ? B DT 0 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 14 N3 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 14 O2 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 14 N4 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 12 N3 ? ? B DA 3 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 12 O4 ? ? B DA 3 C DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 4 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 4 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 4 C DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 10 N1 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 10 O6 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 10 N2 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 9 N1 ? ? B DC 6 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 9 O6 ? ? B DC 6 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 9 N2 ? ? B DC 6 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 7 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 7 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 7 C DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 8 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 8 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 8 C DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DT 5 O4 ? ? B DC 9 C DT 1 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog29 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 9 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 9 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 9 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DA 14 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 1 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog33 hydrog ? ? B DA 15 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 11 C DT 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 15 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 11 C DT 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DC 16 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 12 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DC 16 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 12 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B DC 16 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 12 C DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3W6V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3W6V _atom_sites.fract_transf_matrix[1][1] 0.013070 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009936 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 194 ? ? ? A . n A 1 2 GLY 2 195 ? ? ? A . n A 1 3 SER 3 196 ? ? ? A . n A 1 4 SER 4 197 ? ? ? A . n A 1 5 HIS 5 198 ? ? ? A . n A 1 6 HIS 6 199 ? ? ? A . n A 1 7 HIS 7 200 ? ? ? A . n A 1 8 HIS 8 201 ? ? ? A . n A 1 9 HIS 9 202 ? ? ? A . n A 1 10 HIS 10 203 ? ? ? A . n A 1 11 SER 11 204 ? ? ? A . n A 1 12 SER 12 205 ? ? ? A . n A 1 13 GLY 13 206 ? ? ? A . n A 1 14 LEU 14 207 ? ? ? A . n A 1 15 VAL 15 208 ? ? ? A . n A 1 16 PRO 16 209 ? ? ? A . n A 1 17 ARG 17 210 ? ? ? A . n A 1 18 GLY 18 211 ? ? ? A . n A 1 19 SER 19 212 ? ? ? A . n A 1 20 HIS 20 213 ? ? ? A . n A 1 21 MET 21 214 ? ? ? A . n A 1 22 GLY 22 215 ? ? ? A . n A 1 23 GLN 23 216 ? ? ? A . n A 1 24 GLU 24 217 ? ? ? A . n A 1 25 ARG 25 218 ? ? ? A . n A 1 26 TYR 26 219 ? ? ? A . n A 1 27 LEU 27 220 ? ? ? A . n A 1 28 ASP 28 221 ? ? ? A . n A 1 29 ARG 29 222 ? ? ? A . n A 1 30 SER 30 223 ? ? ? A . n A 1 31 LEU 31 224 ? ? ? A . n A 1 32 PRO 32 225 ? ? ? A . n A 1 33 GLU 33 226 ? ? ? A . n A 1 34 GLU 34 227 ? ? ? A . n A 1 35 ILE 35 228 ? ? ? A . n A 1 36 GLY 36 229 ? ? ? A . n A 1 37 SER 37 230 230 SER SER A . n A 1 38 ASP 38 231 231 ASP ASP A . n A 1 39 PRO 39 232 232 PRO PRO A . n A 1 40 LEU 40 233 233 LEU LEU A . n A 1 41 ALA 41 234 234 ALA ALA A . n A 1 42 GLU 42 235 235 GLU GLU A . n A 1 43 VAL 43 236 236 VAL VAL A . n A 1 44 VAL 44 237 237 VAL VAL A . n A 1 45 ALA 45 238 238 ALA ALA A . n A 1 46 TRP 46 239 239 TRP TRP A . n A 1 47 ALA 47 240 240 ALA ALA A . n A 1 48 LEU 48 241 241 LEU LEU A . n A 1 49 GLU 49 242 242 GLU GLU A . n A 1 50 HIS 50 243 243 HIS HIS A . n A 1 51 LEU 51 244 244 LEU LEU A . n A 1 52 HIS 52 245 245 HIS HIS A . n A 1 53 GLU 53 246 246 GLU GLU A . n A 1 54 GLN 54 247 247 GLN GLN A . n A 1 55 PHE 55 248 248 PHE PHE A . n A 1 56 ASP 56 249 249 ASP ASP A . n A 1 57 VAL 57 250 250 VAL VAL A . n A 1 58 GLU 58 251 251 GLU GLU A . n A 1 59 THR 59 252 252 THR THR A . n A 1 60 LEU 60 253 253 LEU LEU A . n A 1 61 ALA 61 254 254 ALA ALA A . n A 1 62 ALA 62 255 255 ALA ALA A . n A 1 63 ARG 63 256 256 ARG ARG A . n A 1 64 ALA 64 257 257 ALA ALA A . n A 1 65 TYR 65 258 258 TYR TYR A . n A 1 66 MET 66 259 259 MET MET A . n A 1 67 SER 67 260 260 SER SER A . n A 1 68 ARG 68 261 261 ARG ARG A . n A 1 69 ARG 69 262 262 ARG ARG A . n A 1 70 THR 70 263 263 THR THR A . n A 1 71 PHE 71 264 264 PHE PHE A . n A 1 72 ASP 72 265 265 ASP ASP A . n A 1 73 ARG 73 266 266 ARG ARG A . n A 1 74 ARG 74 267 267 ARG ARG A . n A 1 75 PHE 75 268 268 PHE PHE A . n A 1 76 ARG 76 269 269 ARG ARG A . n A 1 77 SER 77 270 270 SER SER A . n A 1 78 LEU 78 271 271 LEU LEU A . n A 1 79 THR 79 272 272 THR THR A . n A 1 80 GLY 80 273 273 GLY GLY A . n A 1 81 SER 81 274 274 SER SER A . n A 1 82 ALA 82 275 275 ALA ALA A . n A 1 83 PRO 83 276 276 PRO PRO A . n A 1 84 LEU 84 277 277 LEU LEU A . n A 1 85 GLN 85 278 278 GLN GLN A . n A 1 86 TRP 86 279 279 TRP TRP A . n A 1 87 LEU 87 280 280 LEU LEU A . n A 1 88 ILE 88 281 281 ILE ILE A . n A 1 89 THR 89 282 282 THR THR A . n A 1 90 GLN 90 283 283 GLN GLN A . n A 1 91 ARG 91 284 284 ARG ARG A . n A 1 92 VAL 92 285 285 VAL VAL A . n A 1 93 LEU 93 286 286 LEU LEU A . n A 1 94 GLN 94 287 287 GLN GLN A . n A 1 95 ALA 95 288 288 ALA ALA A . n A 1 96 GLN 96 289 289 GLN GLN A . n A 1 97 ARG 97 290 290 ARG ARG A . n A 1 98 LEU 98 291 291 LEU LEU A . n A 1 99 LEU 99 292 292 LEU LEU A . n A 1 100 GLU 100 293 293 GLU GLU A . n A 1 101 THR 101 294 294 THR THR A . n A 1 102 SER 102 295 295 SER SER A . n A 1 103 ASP 103 296 296 ASP ASP A . n A 1 104 TYR 104 297 297 TYR TYR A . n A 1 105 SER 105 298 298 SER SER A . n A 1 106 VAL 106 299 299 VAL VAL A . n A 1 107 ASP 107 300 300 ASP ASP A . n A 1 108 GLU 108 301 301 GLU GLU A . n A 1 109 VAL 109 302 302 VAL VAL A . n A 1 110 ALA 110 303 303 ALA ALA A . n A 1 111 GLY 111 304 304 GLY GLY A . n A 1 112 ARG 112 305 305 ARG ARG A . n A 1 113 CYS 113 306 306 CYS CYS A . n A 1 114 GLY 114 307 307 GLY GLY A . n A 1 115 PHE 115 308 308 PHE PHE A . n A 1 116 ARG 116 309 309 ARG ARG A . n A 1 117 SER 117 310 310 SER SER A . n A 1 118 PRO 118 311 311 PRO PRO A . n A 1 119 VAL 119 312 312 VAL VAL A . n A 1 120 ALA 120 313 313 ALA ALA A . n A 1 121 LEU 121 314 314 LEU LEU A . n A 1 122 ARG 122 315 315 ARG ARG A . n A 1 123 GLY 123 316 316 GLY GLY A . n A 1 124 HIS 124 317 317 HIS HIS A . n A 1 125 PHE 125 318 318 PHE PHE A . n A 1 126 ARG 126 319 319 ARG ARG A . n A 1 127 ARG 127 320 320 ARG ARG A . n A 1 128 GLN 128 321 321 GLN GLN A . n A 1 129 LEU 129 322 322 LEU LEU A . n A 1 130 GLY 130 323 323 GLY GLY A . n A 1 131 SER 131 324 324 SER SER A . n A 1 132 SER 132 325 325 SER SER A . n A 1 133 PRO 133 326 326 PRO PRO A . n A 1 134 ALA 134 327 327 ALA ALA A . n A 1 135 ALA 135 328 328 ALA ALA A . n A 1 136 TYR 136 329 329 TYR TYR A . n A 1 137 ARG 137 330 330 ARG ARG A . n A 1 138 ALA 138 331 331 ALA ALA A . n A 1 139 ALA 139 332 332 ALA ALA A . n A 1 140 TYR 140 333 333 TYR TYR A . n A 1 141 ARG 141 334 334 ARG ARG A . n A 1 142 ALA 142 335 335 ALA ALA A . n A 1 143 ARG 143 336 336 ARG ARG A . n A 1 144 ARG 144 337 337 ARG ARG A . n A 1 145 PRO 145 338 338 PRO PRO A . n A 1 146 GLN 146 339 339 GLN GLN A . n A 1 147 GLY 147 340 340 GLY GLY A . n B 2 1 DC 1 -3 -3 DC DC B . n B 2 2 DT 2 -2 -2 DT DT B . n B 2 3 DG 3 -1 -1 DG DG B . n B 2 4 DT 4 0 0 DT DT B . n B 2 5 DG 5 1 1 DG DG B . n B 2 6 DA 6 2 2 DA DA B . n B 2 7 DA 7 3 3 DA DA B . n B 2 8 DC 8 4 4 DC DC B . n B 2 9 DC 9 5 5 DC DC B . n B 2 10 DC 10 6 6 DC DC B . n B 2 11 DG 11 7 7 DG DG B . n B 2 12 DC 12 8 8 DC DC B . n B 2 13 DC 13 9 9 DC DC B . n B 2 14 DA 14 10 10 DA DA B . n B 2 15 DA 15 11 11 DA DA B . n B 2 16 DC 16 12 12 DC DC B . n C 3 1 DA 1 -3 -3 DA DA C . n C 3 2 DG 2 -2 -2 DG DG C . n C 3 3 DG 3 -1 -1 DG DG C . n C 3 4 DT 4 0 0 DT DT C . n C 3 5 DT 5 1 1 DT DT C . n C 3 6 DG 6 2 2 DG DG C . n C 3 7 DG 7 3 3 DG DG C . n C 3 8 DC 8 4 4 DC DC C . n C 3 9 DG 9 5 5 DG DG C . n C 3 10 DG 10 6 6 DG DG C . n C 3 11 DG 11 7 7 DG DG C . n C 3 12 DT 12 8 8 DT DT C . n C 3 13 DT 13 9 9 DT DT C . n C 3 14 DC 14 10 10 DC DC C . n C 3 15 DA 15 11 11 DA DA C . n C 3 16 DC 16 12 12 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 401 1 HOH HOH A . D 4 HOH 2 402 4 HOH HOH A . D 4 HOH 3 403 7 HOH HOH A . D 4 HOH 4 404 9 HOH HOH A . D 4 HOH 5 405 16 HOH HOH A . D 4 HOH 6 406 29 HOH HOH A . D 4 HOH 7 407 31 HOH HOH A . D 4 HOH 8 408 34 HOH HOH A . E 4 HOH 1 101 2 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2890 ? 1 MORE -23 ? 1 'SSA (A^2)' 11160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-18 2 'Structure model' 1 1 2013-11-20 3 'Structure model' 1 2 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 XDS 'data scaling' . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG -1 ? ? "C1'" B DG -1 ? ? N9 B DG -1 ? ? 111.05 108.30 2.75 0.30 N 2 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 111.32 108.30 3.02 0.30 N 3 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 111.03 108.30 2.73 0.30 N 4 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.08 108.30 2.78 0.30 N 5 1 "O4'" C DG -1 ? ? "C4'" C DG -1 ? ? "C3'" C DG -1 ? ? 100.89 104.50 -3.61 0.40 N 6 1 "O4'" C DG -1 ? ? "C1'" C DG -1 ? ? N9 C DG -1 ? ? 110.75 108.30 2.45 0.30 N 7 1 "C3'" C DC 4 ? ? "C2'" C DC 4 ? ? "C1'" C DC 4 ? ? 97.41 102.40 -4.99 0.80 N 8 1 "O4'" C DC 4 ? ? "C1'" C DC 4 ? ? N1 C DC 4 ? ? 111.43 108.30 3.13 0.30 N 9 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 110.85 108.30 2.55 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 194 ? A MET 1 2 1 Y 1 A GLY 195 ? A GLY 2 3 1 Y 1 A SER 196 ? A SER 3 4 1 Y 1 A SER 197 ? A SER 4 5 1 Y 1 A HIS 198 ? A HIS 5 6 1 Y 1 A HIS 199 ? A HIS 6 7 1 Y 1 A HIS 200 ? A HIS 7 8 1 Y 1 A HIS 201 ? A HIS 8 9 1 Y 1 A HIS 202 ? A HIS 9 10 1 Y 1 A HIS 203 ? A HIS 10 11 1 Y 1 A SER 204 ? A SER 11 12 1 Y 1 A SER 205 ? A SER 12 13 1 Y 1 A GLY 206 ? A GLY 13 14 1 Y 1 A LEU 207 ? A LEU 14 15 1 Y 1 A VAL 208 ? A VAL 15 16 1 Y 1 A PRO 209 ? A PRO 16 17 1 Y 1 A ARG 210 ? A ARG 17 18 1 Y 1 A GLY 211 ? A GLY 18 19 1 Y 1 A SER 212 ? A SER 19 20 1 Y 1 A HIS 213 ? A HIS 20 21 1 Y 1 A MET 214 ? A MET 21 22 1 Y 1 A GLY 215 ? A GLY 22 23 1 Y 1 A GLN 216 ? A GLN 23 24 1 Y 1 A GLU 217 ? A GLU 24 25 1 Y 1 A ARG 218 ? A ARG 25 26 1 Y 1 A TYR 219 ? A TYR 26 27 1 Y 1 A LEU 220 ? A LEU 27 28 1 Y 1 A ASP 221 ? A ASP 28 29 1 Y 1 A ARG 222 ? A ARG 29 30 1 Y 1 A SER 223 ? A SER 30 31 1 Y 1 A LEU 224 ? A LEU 31 32 1 Y 1 A PRO 225 ? A PRO 32 33 1 Y 1 A GLU 226 ? A GLU 33 34 1 Y 1 A GLU 227 ? A GLU 34 35 1 Y 1 A ILE 228 ? A ILE 35 36 1 Y 1 A GLY 229 ? A GLY 36 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 DA OP3 O N N 71 DA P P N N 72 DA OP1 O N N 73 DA OP2 O N N 74 DA "O5'" O N N 75 DA "C5'" C N N 76 DA "C4'" C N R 77 DA "O4'" O N N 78 DA "C3'" C N S 79 DA "O3'" O N N 80 DA "C2'" C N N 81 DA "C1'" C N R 82 DA N9 N Y N 83 DA C8 C Y N 84 DA N7 N Y N 85 DA C5 C Y N 86 DA C6 C Y N 87 DA N6 N N N 88 DA N1 N Y N 89 DA C2 C Y N 90 DA N3 N Y N 91 DA C4 C Y N 92 DA HOP3 H N N 93 DA HOP2 H N N 94 DA "H5'" H N N 95 DA "H5''" H N N 96 DA "H4'" H N N 97 DA "H3'" H N N 98 DA "HO3'" H N N 99 DA "H2'" H N N 100 DA "H2''" H N N 101 DA "H1'" H N N 102 DA H8 H N N 103 DA H61 H N N 104 DA H62 H N N 105 DA H2 H N N 106 DC OP3 O N N 107 DC P P N N 108 DC OP1 O N N 109 DC OP2 O N N 110 DC "O5'" O N N 111 DC "C5'" C N N 112 DC "C4'" C N R 113 DC "O4'" O N N 114 DC "C3'" C N S 115 DC "O3'" O N N 116 DC "C2'" C N N 117 DC "C1'" C N R 118 DC N1 N N N 119 DC C2 C N N 120 DC O2 O N N 121 DC N3 N N N 122 DC C4 C N N 123 DC N4 N N N 124 DC C5 C N N 125 DC C6 C N N 126 DC HOP3 H N N 127 DC HOP2 H N N 128 DC "H5'" H N N 129 DC "H5''" H N N 130 DC "H4'" H N N 131 DC "H3'" H N N 132 DC "HO3'" H N N 133 DC "H2'" H N N 134 DC "H2''" H N N 135 DC "H1'" H N N 136 DC H41 H N N 137 DC H42 H N N 138 DC H5 H N N 139 DC H6 H N N 140 DG OP3 O N N 141 DG P P N N 142 DG OP1 O N N 143 DG OP2 O N N 144 DG "O5'" O N N 145 DG "C5'" C N N 146 DG "C4'" C N R 147 DG "O4'" O N N 148 DG "C3'" C N S 149 DG "O3'" O N N 150 DG "C2'" C N N 151 DG "C1'" C N R 152 DG N9 N Y N 153 DG C8 C Y N 154 DG N7 N Y N 155 DG C5 C Y N 156 DG C6 C N N 157 DG O6 O N N 158 DG N1 N N N 159 DG C2 C N N 160 DG N2 N N N 161 DG N3 N N N 162 DG C4 C Y N 163 DG HOP3 H N N 164 DG HOP2 H N N 165 DG "H5'" H N N 166 DG "H5''" H N N 167 DG "H4'" H N N 168 DG "H3'" H N N 169 DG "HO3'" H N N 170 DG "H2'" H N N 171 DG "H2''" H N N 172 DG "H1'" H N N 173 DG H8 H N N 174 DG H1 H N N 175 DG H21 H N N 176 DG H22 H N N 177 DT OP3 O N N 178 DT P P N N 179 DT OP1 O N N 180 DT OP2 O N N 181 DT "O5'" O N N 182 DT "C5'" C N N 183 DT "C4'" C N R 184 DT "O4'" O N N 185 DT "C3'" C N S 186 DT "O3'" O N N 187 DT "C2'" C N N 188 DT "C1'" C N R 189 DT N1 N N N 190 DT C2 C N N 191 DT O2 O N N 192 DT N3 N N N 193 DT C4 C N N 194 DT O4 O N N 195 DT C5 C N N 196 DT C7 C N N 197 DT C6 C N N 198 DT HOP3 H N N 199 DT HOP2 H N N 200 DT "H5'" H N N 201 DT "H5''" H N N 202 DT "H4'" H N N 203 DT "H3'" H N N 204 DT "HO3'" H N N 205 DT "H2'" H N N 206 DT "H2''" H N N 207 DT "H1'" H N N 208 DT H3 H N N 209 DT H71 H N N 210 DT H72 H N N 211 DT H73 H N N 212 DT H6 H N N 213 GLN N N N N 214 GLN CA C N S 215 GLN C C N N 216 GLN O O N N 217 GLN CB C N N 218 GLN CG C N N 219 GLN CD C N N 220 GLN OE1 O N N 221 GLN NE2 N N N 222 GLN OXT O N N 223 GLN H H N N 224 GLN H2 H N N 225 GLN HA H N N 226 GLN HB2 H N N 227 GLN HB3 H N N 228 GLN HG2 H N N 229 GLN HG3 H N N 230 GLN HE21 H N N 231 GLN HE22 H N N 232 GLN HXT H N N 233 GLU N N N N 234 GLU CA C N S 235 GLU C C N N 236 GLU O O N N 237 GLU CB C N N 238 GLU CG C N N 239 GLU CD C N N 240 GLU OE1 O N N 241 GLU OE2 O N N 242 GLU OXT O N N 243 GLU H H N N 244 GLU H2 H N N 245 GLU HA H N N 246 GLU HB2 H N N 247 GLU HB3 H N N 248 GLU HG2 H N N 249 GLU HG3 H N N 250 GLU HE2 H N N 251 GLU HXT H N N 252 GLY N N N N 253 GLY CA C N N 254 GLY C C N N 255 GLY O O N N 256 GLY OXT O N N 257 GLY H H N N 258 GLY H2 H N N 259 GLY HA2 H N N 260 GLY HA3 H N N 261 GLY HXT H N N 262 HIS N N N N 263 HIS CA C N S 264 HIS C C N N 265 HIS O O N N 266 HIS CB C N N 267 HIS CG C Y N 268 HIS ND1 N Y N 269 HIS CD2 C Y N 270 HIS CE1 C Y N 271 HIS NE2 N Y N 272 HIS OXT O N N 273 HIS H H N N 274 HIS H2 H N N 275 HIS HA H N N 276 HIS HB2 H N N 277 HIS HB3 H N N 278 HIS HD1 H N N 279 HIS HD2 H N N 280 HIS HE1 H N N 281 HIS HE2 H N N 282 HIS HXT H N N 283 HOH O O N N 284 HOH H1 H N N 285 HOH H2 H N N 286 ILE N N N N 287 ILE CA C N S 288 ILE C C N N 289 ILE O O N N 290 ILE CB C N S 291 ILE CG1 C N N 292 ILE CG2 C N N 293 ILE CD1 C N N 294 ILE OXT O N N 295 ILE H H N N 296 ILE H2 H N N 297 ILE HA H N N 298 ILE HB H N N 299 ILE HG12 H N N 300 ILE HG13 H N N 301 ILE HG21 H N N 302 ILE HG22 H N N 303 ILE HG23 H N N 304 ILE HD11 H N N 305 ILE HD12 H N N 306 ILE HD13 H N N 307 ILE HXT H N N 308 LEU N N N N 309 LEU CA C N S 310 LEU C C N N 311 LEU O O N N 312 LEU CB C N N 313 LEU CG C N N 314 LEU CD1 C N N 315 LEU CD2 C N N 316 LEU OXT O N N 317 LEU H H N N 318 LEU H2 H N N 319 LEU HA H N N 320 LEU HB2 H N N 321 LEU HB3 H N N 322 LEU HG H N N 323 LEU HD11 H N N 324 LEU HD12 H N N 325 LEU HD13 H N N 326 LEU HD21 H N N 327 LEU HD22 H N N 328 LEU HD23 H N N 329 LEU HXT H N N 330 MET N N N N 331 MET CA C N S 332 MET C C N N 333 MET O O N N 334 MET CB C N N 335 MET CG C N N 336 MET SD S N N 337 MET CE C N N 338 MET OXT O N N 339 MET H H N N 340 MET H2 H N N 341 MET HA H N N 342 MET HB2 H N N 343 MET HB3 H N N 344 MET HG2 H N N 345 MET HG3 H N N 346 MET HE1 H N N 347 MET HE2 H N N 348 MET HE3 H N N 349 MET HXT H N N 350 PHE N N N N 351 PHE CA C N S 352 PHE C C N N 353 PHE O O N N 354 PHE CB C N N 355 PHE CG C Y N 356 PHE CD1 C Y N 357 PHE CD2 C Y N 358 PHE CE1 C Y N 359 PHE CE2 C Y N 360 PHE CZ C Y N 361 PHE OXT O N N 362 PHE H H N N 363 PHE H2 H N N 364 PHE HA H N N 365 PHE HB2 H N N 366 PHE HB3 H N N 367 PHE HD1 H N N 368 PHE HD2 H N N 369 PHE HE1 H N N 370 PHE HE2 H N N 371 PHE HZ H N N 372 PHE HXT H N N 373 PRO N N N N 374 PRO CA C N S 375 PRO C C N N 376 PRO O O N N 377 PRO CB C N N 378 PRO CG C N N 379 PRO CD C N N 380 PRO OXT O N N 381 PRO H H N N 382 PRO HA H N N 383 PRO HB2 H N N 384 PRO HB3 H N N 385 PRO HG2 H N N 386 PRO HG3 H N N 387 PRO HD2 H N N 388 PRO HD3 H N N 389 PRO HXT H N N 390 SER N N N N 391 SER CA C N S 392 SER C C N N 393 SER O O N N 394 SER CB C N N 395 SER OG O N N 396 SER OXT O N N 397 SER H H N N 398 SER H2 H N N 399 SER HA H N N 400 SER HB2 H N N 401 SER HB3 H N N 402 SER HG H N N 403 SER HXT H N N 404 THR N N N N 405 THR CA C N S 406 THR C C N N 407 THR O O N N 408 THR CB C N R 409 THR OG1 O N N 410 THR CG2 C N N 411 THR OXT O N N 412 THR H H N N 413 THR H2 H N N 414 THR HA H N N 415 THR HB H N N 416 THR HG1 H N N 417 THR HG21 H N N 418 THR HG22 H N N 419 THR HG23 H N N 420 THR HXT H N N 421 TRP N N N N 422 TRP CA C N S 423 TRP C C N N 424 TRP O O N N 425 TRP CB C N N 426 TRP CG C Y N 427 TRP CD1 C Y N 428 TRP CD2 C Y N 429 TRP NE1 N Y N 430 TRP CE2 C Y N 431 TRP CE3 C Y N 432 TRP CZ2 C Y N 433 TRP CZ3 C Y N 434 TRP CH2 C Y N 435 TRP OXT O N N 436 TRP H H N N 437 TRP H2 H N N 438 TRP HA H N N 439 TRP HB2 H N N 440 TRP HB3 H N N 441 TRP HD1 H N N 442 TRP HE1 H N N 443 TRP HE3 H N N 444 TRP HZ2 H N N 445 TRP HZ3 H N N 446 TRP HH2 H N N 447 TRP HXT H N N 448 TYR N N N N 449 TYR CA C N S 450 TYR C C N N 451 TYR O O N N 452 TYR CB C N N 453 TYR CG C Y N 454 TYR CD1 C Y N 455 TYR CD2 C Y N 456 TYR CE1 C Y N 457 TYR CE2 C Y N 458 TYR CZ C Y N 459 TYR OH O N N 460 TYR OXT O N N 461 TYR H H N N 462 TYR H2 H N N 463 TYR HA H N N 464 TYR HB2 H N N 465 TYR HB3 H N N 466 TYR HD1 H N N 467 TYR HD2 H N N 468 TYR HE1 H N N 469 TYR HE2 H N N 470 TYR HH H N N 471 TYR HXT H N N 472 VAL N N N N 473 VAL CA C N S 474 VAL C C N N 475 VAL O O N N 476 VAL CB C N N 477 VAL CG1 C N N 478 VAL CG2 C N N 479 VAL OXT O N N 480 VAL H H N N 481 VAL H2 H N N 482 VAL HA H N N 483 VAL HB H N N 484 VAL HG11 H N N 485 VAL HG12 H N N 486 VAL HG13 H N N 487 VAL HG21 H N N 488 VAL HG22 H N N 489 VAL HG23 H N N 490 VAL HXT H N N 491 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 DA OP3 P sing N N 67 DA OP3 HOP3 sing N N 68 DA P OP1 doub N N 69 DA P OP2 sing N N 70 DA P "O5'" sing N N 71 DA OP2 HOP2 sing N N 72 DA "O5'" "C5'" sing N N 73 DA "C5'" "C4'" sing N N 74 DA "C5'" "H5'" sing N N 75 DA "C5'" "H5''" sing N N 76 DA "C4'" "O4'" sing N N 77 DA "C4'" "C3'" sing N N 78 DA "C4'" "H4'" sing N N 79 DA "O4'" "C1'" sing N N 80 DA "C3'" "O3'" sing N N 81 DA "C3'" "C2'" sing N N 82 DA "C3'" "H3'" sing N N 83 DA "O3'" "HO3'" sing N N 84 DA "C2'" "C1'" sing N N 85 DA "C2'" "H2'" sing N N 86 DA "C2'" "H2''" sing N N 87 DA "C1'" N9 sing N N 88 DA "C1'" "H1'" sing N N 89 DA N9 C8 sing Y N 90 DA N9 C4 sing Y N 91 DA C8 N7 doub Y N 92 DA C8 H8 sing N N 93 DA N7 C5 sing Y N 94 DA C5 C6 sing Y N 95 DA C5 C4 doub Y N 96 DA C6 N6 sing N N 97 DA C6 N1 doub Y N 98 DA N6 H61 sing N N 99 DA N6 H62 sing N N 100 DA N1 C2 sing Y N 101 DA C2 N3 doub Y N 102 DA C2 H2 sing N N 103 DA N3 C4 sing Y N 104 DC OP3 P sing N N 105 DC OP3 HOP3 sing N N 106 DC P OP1 doub N N 107 DC P OP2 sing N N 108 DC P "O5'" sing N N 109 DC OP2 HOP2 sing N N 110 DC "O5'" "C5'" sing N N 111 DC "C5'" "C4'" sing N N 112 DC "C5'" "H5'" sing N N 113 DC "C5'" "H5''" sing N N 114 DC "C4'" "O4'" sing N N 115 DC "C4'" "C3'" sing N N 116 DC "C4'" "H4'" sing N N 117 DC "O4'" "C1'" sing N N 118 DC "C3'" "O3'" sing N N 119 DC "C3'" "C2'" sing N N 120 DC "C3'" "H3'" sing N N 121 DC "O3'" "HO3'" sing N N 122 DC "C2'" "C1'" sing N N 123 DC "C2'" "H2'" sing N N 124 DC "C2'" "H2''" sing N N 125 DC "C1'" N1 sing N N 126 DC "C1'" "H1'" sing N N 127 DC N1 C2 sing N N 128 DC N1 C6 sing N N 129 DC C2 O2 doub N N 130 DC C2 N3 sing N N 131 DC N3 C4 doub N N 132 DC C4 N4 sing N N 133 DC C4 C5 sing N N 134 DC N4 H41 sing N N 135 DC N4 H42 sing N N 136 DC C5 C6 doub N N 137 DC C5 H5 sing N N 138 DC C6 H6 sing N N 139 DG OP3 P sing N N 140 DG OP3 HOP3 sing N N 141 DG P OP1 doub N N 142 DG P OP2 sing N N 143 DG P "O5'" sing N N 144 DG OP2 HOP2 sing N N 145 DG "O5'" "C5'" sing N N 146 DG "C5'" "C4'" sing N N 147 DG "C5'" "H5'" sing N N 148 DG "C5'" "H5''" sing N N 149 DG "C4'" "O4'" sing N N 150 DG "C4'" "C3'" sing N N 151 DG "C4'" "H4'" sing N N 152 DG "O4'" "C1'" sing N N 153 DG "C3'" "O3'" sing N N 154 DG "C3'" "C2'" sing N N 155 DG "C3'" "H3'" sing N N 156 DG "O3'" "HO3'" sing N N 157 DG "C2'" "C1'" sing N N 158 DG "C2'" "H2'" sing N N 159 DG "C2'" "H2''" sing N N 160 DG "C1'" N9 sing N N 161 DG "C1'" "H1'" sing N N 162 DG N9 C8 sing Y N 163 DG N9 C4 sing Y N 164 DG C8 N7 doub Y N 165 DG C8 H8 sing N N 166 DG N7 C5 sing Y N 167 DG C5 C6 sing N N 168 DG C5 C4 doub Y N 169 DG C6 O6 doub N N 170 DG C6 N1 sing N N 171 DG N1 C2 sing N N 172 DG N1 H1 sing N N 173 DG C2 N2 sing N N 174 DG C2 N3 doub N N 175 DG N2 H21 sing N N 176 DG N2 H22 sing N N 177 DG N3 C4 sing N N 178 DT OP3 P sing N N 179 DT OP3 HOP3 sing N N 180 DT P OP1 doub N N 181 DT P OP2 sing N N 182 DT P "O5'" sing N N 183 DT OP2 HOP2 sing N N 184 DT "O5'" "C5'" sing N N 185 DT "C5'" "C4'" sing N N 186 DT "C5'" "H5'" sing N N 187 DT "C5'" "H5''" sing N N 188 DT "C4'" "O4'" sing N N 189 DT "C4'" "C3'" sing N N 190 DT "C4'" "H4'" sing N N 191 DT "O4'" "C1'" sing N N 192 DT "C3'" "O3'" sing N N 193 DT "C3'" "C2'" sing N N 194 DT "C3'" "H3'" sing N N 195 DT "O3'" "HO3'" sing N N 196 DT "C2'" "C1'" sing N N 197 DT "C2'" "H2'" sing N N 198 DT "C2'" "H2''" sing N N 199 DT "C1'" N1 sing N N 200 DT "C1'" "H1'" sing N N 201 DT N1 C2 sing N N 202 DT N1 C6 sing N N 203 DT C2 O2 doub N N 204 DT C2 N3 sing N N 205 DT N3 C4 sing N N 206 DT N3 H3 sing N N 207 DT C4 O4 doub N N 208 DT C4 C5 sing N N 209 DT C5 C7 sing N N 210 DT C5 C6 doub N N 211 DT C7 H71 sing N N 212 DT C7 H72 sing N N 213 DT C7 H73 sing N N 214 DT C6 H6 sing N N 215 GLN N CA sing N N 216 GLN N H sing N N 217 GLN N H2 sing N N 218 GLN CA C sing N N 219 GLN CA CB sing N N 220 GLN CA HA sing N N 221 GLN C O doub N N 222 GLN C OXT sing N N 223 GLN CB CG sing N N 224 GLN CB HB2 sing N N 225 GLN CB HB3 sing N N 226 GLN CG CD sing N N 227 GLN CG HG2 sing N N 228 GLN CG HG3 sing N N 229 GLN CD OE1 doub N N 230 GLN CD NE2 sing N N 231 GLN NE2 HE21 sing N N 232 GLN NE2 HE22 sing N N 233 GLN OXT HXT sing N N 234 GLU N CA sing N N 235 GLU N H sing N N 236 GLU N H2 sing N N 237 GLU CA C sing N N 238 GLU CA CB sing N N 239 GLU CA HA sing N N 240 GLU C O doub N N 241 GLU C OXT sing N N 242 GLU CB CG sing N N 243 GLU CB HB2 sing N N 244 GLU CB HB3 sing N N 245 GLU CG CD sing N N 246 GLU CG HG2 sing N N 247 GLU CG HG3 sing N N 248 GLU CD OE1 doub N N 249 GLU CD OE2 sing N N 250 GLU OE2 HE2 sing N N 251 GLU OXT HXT sing N N 252 GLY N CA sing N N 253 GLY N H sing N N 254 GLY N H2 sing N N 255 GLY CA C sing N N 256 GLY CA HA2 sing N N 257 GLY CA HA3 sing N N 258 GLY C O doub N N 259 GLY C OXT sing N N 260 GLY OXT HXT sing N N 261 HIS N CA sing N N 262 HIS N H sing N N 263 HIS N H2 sing N N 264 HIS CA C sing N N 265 HIS CA CB sing N N 266 HIS CA HA sing N N 267 HIS C O doub N N 268 HIS C OXT sing N N 269 HIS CB CG sing N N 270 HIS CB HB2 sing N N 271 HIS CB HB3 sing N N 272 HIS CG ND1 sing Y N 273 HIS CG CD2 doub Y N 274 HIS ND1 CE1 doub Y N 275 HIS ND1 HD1 sing N N 276 HIS CD2 NE2 sing Y N 277 HIS CD2 HD2 sing N N 278 HIS CE1 NE2 sing Y N 279 HIS CE1 HE1 sing N N 280 HIS NE2 HE2 sing N N 281 HIS OXT HXT sing N N 282 HOH O H1 sing N N 283 HOH O H2 sing N N 284 ILE N CA sing N N 285 ILE N H sing N N 286 ILE N H2 sing N N 287 ILE CA C sing N N 288 ILE CA CB sing N N 289 ILE CA HA sing N N 290 ILE C O doub N N 291 ILE C OXT sing N N 292 ILE CB CG1 sing N N 293 ILE CB CG2 sing N N 294 ILE CB HB sing N N 295 ILE CG1 CD1 sing N N 296 ILE CG1 HG12 sing N N 297 ILE CG1 HG13 sing N N 298 ILE CG2 HG21 sing N N 299 ILE CG2 HG22 sing N N 300 ILE CG2 HG23 sing N N 301 ILE CD1 HD11 sing N N 302 ILE CD1 HD12 sing N N 303 ILE CD1 HD13 sing N N 304 ILE OXT HXT sing N N 305 LEU N CA sing N N 306 LEU N H sing N N 307 LEU N H2 sing N N 308 LEU CA C sing N N 309 LEU CA CB sing N N 310 LEU CA HA sing N N 311 LEU C O doub N N 312 LEU C OXT sing N N 313 LEU CB CG sing N N 314 LEU CB HB2 sing N N 315 LEU CB HB3 sing N N 316 LEU CG CD1 sing N N 317 LEU CG CD2 sing N N 318 LEU CG HG sing N N 319 LEU CD1 HD11 sing N N 320 LEU CD1 HD12 sing N N 321 LEU CD1 HD13 sing N N 322 LEU CD2 HD21 sing N N 323 LEU CD2 HD22 sing N N 324 LEU CD2 HD23 sing N N 325 LEU OXT HXT sing N N 326 MET N CA sing N N 327 MET N H sing N N 328 MET N H2 sing N N 329 MET CA C sing N N 330 MET CA CB sing N N 331 MET CA HA sing N N 332 MET C O doub N N 333 MET C OXT sing N N 334 MET CB CG sing N N 335 MET CB HB2 sing N N 336 MET CB HB3 sing N N 337 MET CG SD sing N N 338 MET CG HG2 sing N N 339 MET CG HG3 sing N N 340 MET SD CE sing N N 341 MET CE HE1 sing N N 342 MET CE HE2 sing N N 343 MET CE HE3 sing N N 344 MET OXT HXT sing N N 345 PHE N CA sing N N 346 PHE N H sing N N 347 PHE N H2 sing N N 348 PHE CA C sing N N 349 PHE CA CB sing N N 350 PHE CA HA sing N N 351 PHE C O doub N N 352 PHE C OXT sing N N 353 PHE CB CG sing N N 354 PHE CB HB2 sing N N 355 PHE CB HB3 sing N N 356 PHE CG CD1 doub Y N 357 PHE CG CD2 sing Y N 358 PHE CD1 CE1 sing Y N 359 PHE CD1 HD1 sing N N 360 PHE CD2 CE2 doub Y N 361 PHE CD2 HD2 sing N N 362 PHE CE1 CZ doub Y N 363 PHE CE1 HE1 sing N N 364 PHE CE2 CZ sing Y N 365 PHE CE2 HE2 sing N N 366 PHE CZ HZ sing N N 367 PHE OXT HXT sing N N 368 PRO N CA sing N N 369 PRO N CD sing N N 370 PRO N H sing N N 371 PRO CA C sing N N 372 PRO CA CB sing N N 373 PRO CA HA sing N N 374 PRO C O doub N N 375 PRO C OXT sing N N 376 PRO CB CG sing N N 377 PRO CB HB2 sing N N 378 PRO CB HB3 sing N N 379 PRO CG CD sing N N 380 PRO CG HG2 sing N N 381 PRO CG HG3 sing N N 382 PRO CD HD2 sing N N 383 PRO CD HD3 sing N N 384 PRO OXT HXT sing N N 385 SER N CA sing N N 386 SER N H sing N N 387 SER N H2 sing N N 388 SER CA C sing N N 389 SER CA CB sing N N 390 SER CA HA sing N N 391 SER C O doub N N 392 SER C OXT sing N N 393 SER CB OG sing N N 394 SER CB HB2 sing N N 395 SER CB HB3 sing N N 396 SER OG HG sing N N 397 SER OXT HXT sing N N 398 THR N CA sing N N 399 THR N H sing N N 400 THR N H2 sing N N 401 THR CA C sing N N 402 THR CA CB sing N N 403 THR CA HA sing N N 404 THR C O doub N N 405 THR C OXT sing N N 406 THR CB OG1 sing N N 407 THR CB CG2 sing N N 408 THR CB HB sing N N 409 THR OG1 HG1 sing N N 410 THR CG2 HG21 sing N N 411 THR CG2 HG22 sing N N 412 THR CG2 HG23 sing N N 413 THR OXT HXT sing N N 414 TRP N CA sing N N 415 TRP N H sing N N 416 TRP N H2 sing N N 417 TRP CA C sing N N 418 TRP CA CB sing N N 419 TRP CA HA sing N N 420 TRP C O doub N N 421 TRP C OXT sing N N 422 TRP CB CG sing N N 423 TRP CB HB2 sing N N 424 TRP CB HB3 sing N N 425 TRP CG CD1 doub Y N 426 TRP CG CD2 sing Y N 427 TRP CD1 NE1 sing Y N 428 TRP CD1 HD1 sing N N 429 TRP CD2 CE2 doub Y N 430 TRP CD2 CE3 sing Y N 431 TRP NE1 CE2 sing Y N 432 TRP NE1 HE1 sing N N 433 TRP CE2 CZ2 sing Y N 434 TRP CE3 CZ3 doub Y N 435 TRP CE3 HE3 sing N N 436 TRP CZ2 CH2 doub Y N 437 TRP CZ2 HZ2 sing N N 438 TRP CZ3 CH2 sing Y N 439 TRP CZ3 HZ3 sing N N 440 TRP CH2 HH2 sing N N 441 TRP OXT HXT sing N N 442 TYR N CA sing N N 443 TYR N H sing N N 444 TYR N H2 sing N N 445 TYR CA C sing N N 446 TYR CA CB sing N N 447 TYR CA HA sing N N 448 TYR C O doub N N 449 TYR C OXT sing N N 450 TYR CB CG sing N N 451 TYR CB HB2 sing N N 452 TYR CB HB3 sing N N 453 TYR CG CD1 doub Y N 454 TYR CG CD2 sing Y N 455 TYR CD1 CE1 sing Y N 456 TYR CD1 HD1 sing N N 457 TYR CD2 CE2 doub Y N 458 TYR CD2 HD2 sing N N 459 TYR CE1 CZ doub Y N 460 TYR CE1 HE1 sing N N 461 TYR CE2 CZ sing Y N 462 TYR CE2 HE2 sing N N 463 TYR CZ OH sing N N 464 TYR OH HH sing N N 465 TYR OXT HXT sing N N 466 VAL N CA sing N N 467 VAL N H sing N N 468 VAL N H2 sing N N 469 VAL CA C sing N N 470 VAL CA CB sing N N 471 VAL CA HA sing N N 472 VAL C O doub N N 473 VAL C OXT sing N N 474 VAL CB CG1 sing N N 475 VAL CB CG2 sing N N 476 VAL CB HB sing N N 477 VAL CG1 HG11 sing N N 478 VAL CG1 HG12 sing N N 479 VAL CG1 HG13 sing N N 480 VAL CG2 HG21 sing N N 481 VAL CG2 HG22 sing N N 482 VAL CG2 HG23 sing N N 483 VAL OXT HXT sing N N 484 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3W6V 'double helix' 3W6V 'b-form double helix' 3W6V 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 3 1_555 C DC 16 1_555 -0.718 -0.263 -0.174 -6.790 -9.152 0.936 1 B_DG-1:DC12_C B -1 ? C 12 ? 19 1 1 B DT 4 1_555 C DA 15 1_555 -0.556 -0.223 -0.060 8.429 -0.980 -0.886 2 B_DT0:DA11_C B 0 ? C 11 ? 20 1 1 B DG 5 1_555 C DC 14 1_555 -0.478 -0.304 -0.045 6.837 -6.864 -3.439 3 B_DG1:DC10_C B 1 ? C 10 ? 19 1 1 B DA 6 1_555 C DT 13 1_555 0.152 -0.047 0.269 10.639 -13.389 -7.879 4 B_DA2:DT9_C B 2 ? C 9 ? 20 1 1 B DA 7 1_555 C DT 12 1_555 0.414 -0.214 0.129 3.949 -15.182 -3.601 5 B_DA3:DT8_C B 3 ? C 8 ? 20 1 1 B DC 8 1_555 C DG 11 1_555 0.165 -0.230 0.402 -15.654 -13.612 -5.513 6 B_DC4:DG7_C B 4 ? C 7 ? 19 1 1 B DC 9 1_555 C DG 10 1_555 -0.806 0.010 -0.419 -8.939 -0.981 5.908 7 B_DC5:DG6_C B 5 ? C 6 ? 19 1 1 B DC 10 1_555 C DG 9 1_555 0.258 0.197 -0.085 15.012 -13.162 5.529 8 B_DC6:DG5_C B 6 ? C 5 ? 19 1 1 B DG 11 1_555 C DC 8 1_555 0.632 -0.262 0.099 2.418 -15.701 -6.330 9 B_DG7:DC4_C B 7 ? C 4 ? 19 1 1 B DC 12 1_555 C DG 7 1_555 0.097 0.100 0.056 7.897 -5.850 -5.841 10 B_DC8:DG3_C B 8 ? C 3 ? 19 1 1 B DC 13 1_555 C DG 6 1_555 0.237 -0.167 0.401 2.722 -1.965 5.936 11 B_DC9:DG2_C B 9 ? C 2 ? 19 1 1 B DA 14 1_555 C DT 5 1_555 -0.313 0.036 1.085 18.119 -19.856 0.398 12 B_DA10:DT1_C B 10 ? C 1 ? ? ? 1 B DA 15 1_555 C DT 4 1_555 1.062 -0.137 0.532 12.976 -17.536 -0.710 13 B_DA11:DT0_C B 11 ? C 0 ? 20 1 1 B DC 16 1_555 C DG 3 1_555 -0.796 -0.027 0.103 9.756 -21.285 -2.963 14 B_DC12:DG-1_C B 12 ? C -1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 3 1_555 C DC 16 1_555 B DT 4 1_555 C DA 15 1_555 -0.503 -0.042 2.961 -1.353 0.926 33.844 -0.207 0.666 2.977 1.590 2.323 33.883 1 BB_DG-1DT0:DA11DC12_CC B -1 ? C 12 ? B 0 ? C 11 ? 1 B DT 4 1_555 C DA 15 1_555 B DG 5 1_555 C DC 14 1_555 0.118 -0.545 3.260 0.337 4.663 30.772 -1.894 -0.156 3.146 8.725 -0.631 31.116 2 BB_DT0DG1:DC10DA11_CC B 0 ? C 11 ? B 1 ? C 10 ? 1 B DG 5 1_555 C DC 14 1_555 B DA 6 1_555 C DT 13 1_555 0.143 -0.582 3.216 0.931 -5.461 40.035 -0.232 -0.102 3.266 -7.931 -1.352 40.401 3 BB_DG1DA2:DT9DC10_CC B 1 ? C 10 ? B 2 ? C 9 ? 1 B DA 6 1_555 C DT 13 1_555 B DA 7 1_555 C DT 12 1_555 -0.019 -0.581 3.208 2.241 -0.626 39.243 -0.790 0.289 3.210 -0.931 -3.334 39.309 4 BB_DA2DA3:DT8DT9_CC B 2 ? C 9 ? B 3 ? C 8 ? 1 B DA 7 1_555 C DT 12 1_555 B DC 8 1_555 C DG 11 1_555 -0.204 -0.794 3.738 -2.553 1.876 33.091 -1.745 -0.129 3.693 3.284 4.470 33.238 5 BB_DA3DC4:DG7DT8_CC B 3 ? C 8 ? B 4 ? C 7 ? 1 B DC 8 1_555 C DG 11 1_555 B DC 9 1_555 C DG 10 1_555 1.405 1.023 3.248 9.533 -1.018 35.331 1.777 -0.866 3.469 -1.641 -15.361 36.569 6 BB_DC4DC5:DG6DG7_CC B 4 ? C 7 ? B 5 ? C 6 ? 1 B DC 9 1_555 C DG 10 1_555 B DC 10 1_555 C DG 9 1_555 -0.868 1.334 2.780 -5.026 7.556 31.677 1.171 0.744 3.105 13.499 8.980 32.919 7 BB_DC5DC6:DG5DG6_CC B 5 ? C 6 ? B 6 ? C 5 ? 1 B DC 10 1_555 C DG 9 1_555 B DG 11 1_555 C DC 8 1_555 -0.770 0.850 3.735 -0.280 2.992 41.243 0.834 1.056 3.790 4.240 0.397 41.347 8 BB_DC6DG7:DC4DG5_CC B 6 ? C 5 ? B 7 ? C 4 ? 1 B DG 11 1_555 C DC 8 1_555 B DC 12 1_555 C DG 7 1_555 0.417 -0.853 3.022 0.302 3.422 27.115 -2.579 -0.814 2.899 7.262 -0.641 27.328 9 BB_DG7DC8:DG3DC4_CC B 7 ? C 4 ? B 8 ? C 3 ? 1 B DC 12 1_555 C DG 7 1_555 B DC 13 1_555 C DG 6 1_555 1.838 0.227 3.403 7.007 15.068 33.818 -1.839 -1.835 3.494 24.176 -11.243 37.573 10 BB_DC8DC9:DG2DG3_CC B 8 ? C 3 ? B 9 ? C 2 ? 1 B DC 13 1_555 C DG 6 1_555 B DA 14 1_555 C DT 5 1_555 -0.627 0.814 3.013 -5.272 -1.896 31.594 1.790 0.254 3.023 -3.448 9.588 32.074 11 BB_DC9DA10:DT1DG2_CC B 9 ? C 2 ? B 10 ? C 1 ? 1 B DA 14 1_555 C DT 5 1_555 B DA 15 1_555 C DT 4 1_555 0.271 -0.937 3.350 4.694 -2.471 39.574 -1.077 0.164 3.409 -3.630 -6.896 39.914 12 BB_DA10DA11:DT0DT1_CC B 10 ? C 1 ? B 11 ? C 0 ? 1 B DA 15 1_555 C DT 4 1_555 B DC 16 1_555 C DG 3 1_555 0.051 -1.003 3.165 -0.456 8.351 25.261 -4.200 -0.220 2.699 18.460 1.007 26.588 13 BB_DA11DC12:DG-1DT0_CC B 11 ? C 0 ? B 12 ? C -1 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1D5Y '1D5Y, 1BL0' 2 ? 'experimental model' PDB 1BL0 '1D5Y, 1BL0' #