HEADER OXIDOREDUCTASE 27-FEB-13 3W79 TITLE CRYSTAL STRUCTURE OF AZOREDUCTASE AZRC IN COMPLEX WITH SULFONE- TITLE 2 MODIFIED AZO DYE ORANGE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN-DEPENDENT NADH-AZOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: AZO-DYE REDUCTASE, FMN-DEPENDENT NADH-AZO COMPOUND COMPND 5 OXIDOREDUCTASE; COMPND 6 EC: 1.7.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS; SOURCE 3 ORGANISM_TAXID: 391699; SOURCE 4 STRAIN: B29; SOURCE 5 GENE: AZRC, AZOR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AZOREDUCTASE, AZO BOND CLEAVAGE, FMN-BINDING, AZOREDUCTASE- KEYWDS 2 AZOREDUCTASE SUBSTRATE COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.OGATA,J.YU,T.OOI,M.YAO REVDAT 4 08-NOV-23 3W79 1 REMARK REVDAT 3 25-DEC-19 3W79 1 JRNL REVDAT 2 22-NOV-17 3W79 1 REMARK REVDAT 1 12-FEB-14 3W79 0 JRNL AUTH J.YU,D.OGATA,Z.GAI,S.TAGUCHI,I.TANAKA,T.OOI,M.YAO JRNL TITL STRUCTURES OF AZRA AND OF AZRC COMPLEXED WITH SUBSTRATE OR JRNL TITL 2 INHIBITOR: INSIGHT INTO SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 3 MECHANISM. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 553 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 24531489 JRNL DOI 10.1107/S1399004713030988 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 37655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1988 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 216 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.34000 REMARK 3 B22 (A**2) : 4.43000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.411 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.178 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6816 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6272 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9288 ; 1.516 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14384 ; 1.448 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 5.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;37.970 ;25.513 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1020 ;18.530 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;13.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1004 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7856 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1580 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 211 B 2 211 11388 0.13 0.05 REMARK 3 2 A 2 211 C 2 211 11747 0.11 0.05 REMARK 3 3 A 2 211 D 2 211 11378 0.13 0.05 REMARK 3 4 B 2 211 C 2 211 11319 0.13 0.05 REMARK 3 5 B 2 211 D 2 211 11346 0.13 0.05 REMARK 3 6 C 2 211 D 2 211 11400 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): 37.7522 -28.3752 30.6377 REMARK 3 T TENSOR REMARK 3 T11: 0.1117 T22: 0.0114 REMARK 3 T33: 0.0487 T12: -0.0103 REMARK 3 T13: 0.0079 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7204 L22: 0.3247 REMARK 3 L33: 1.1653 L12: 0.0969 REMARK 3 L13: -0.3627 L23: -0.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0797 S13: -0.0108 REMARK 3 S21: 0.0477 S22: -0.0014 S23: -0.0371 REMARK 3 S31: -0.0603 S32: 0.0043 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 211 REMARK 3 ORIGIN FOR THE GROUP (A): 55.6142 -27.8129 13.7946 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0640 REMARK 3 T33: 0.0270 T12: -0.0125 REMARK 3 T13: 0.0096 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.2472 L22: 0.4516 REMARK 3 L33: 0.2474 L12: 0.4932 REMARK 3 L13: -0.0698 L23: 0.1094 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: 0.1360 S13: 0.0218 REMARK 3 S21: 0.0526 S22: -0.0544 S23: -0.0297 REMARK 3 S31: -0.0148 S32: -0.0427 S33: 0.0123 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 211 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5328 0.6667 29.8613 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.0154 REMARK 3 T33: 0.0588 T12: 0.0024 REMARK 3 T13: 0.0095 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.5116 L22: 0.4152 REMARK 3 L33: 1.0758 L12: 0.2091 REMARK 3 L13: 0.3116 L23: 0.3509 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: 0.0724 S13: -0.0030 REMARK 3 S21: 0.0238 S22: -0.0112 S23: 0.0216 REMARK 3 S31: 0.0162 S32: 0.0173 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 211 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3501 -0.0534 13.1249 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0478 REMARK 3 T33: 0.0212 T12: -0.0077 REMARK 3 T13: 0.0209 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.3325 L22: 0.4431 REMARK 3 L33: 0.3231 L12: 0.4185 REMARK 3 L13: 0.1955 L23: -0.1198 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.1637 S13: 0.0087 REMARK 3 S21: 0.0419 S22: -0.0138 S23: 0.0376 REMARK 3 S31: 0.0111 S32: 0.0571 S33: 0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000095974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3W77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 600, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.57200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.28350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.57200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.28350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 123 -54.99 -121.81 REMARK 500 LYS B 123 -55.15 -121.27 REMARK 500 LYS C 123 -54.67 -120.77 REMARK 500 LYS D 123 -54.28 -122.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORI A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORI B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORI C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ORI D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W77 RELATED DB: PDB REMARK 900 RELATED ID: 3W78 RELATED DB: PDB REMARK 900 RELATED ID: 3W7A RELATED DB: PDB DBREF 3W79 A 1 211 UNP C0STY1 C0STY1_9BACI 1 211 DBREF 3W79 B 1 211 UNP C0STY1 C0STY1_9BACI 1 211 DBREF 3W79 C 1 211 UNP C0STY1 C0STY1_9BACI 1 211 DBREF 3W79 D 1 211 UNP C0STY1 C0STY1_9BACI 1 211 SEQRES 1 A 211 MET THR LYS VAL LEU PHE ILE THR ALA ASN PRO ASN SER SEQRES 2 A 211 ALA GLU GLY SER PHE GLY MET ALA VAL GLY GLU ALA PHE SEQRES 3 A 211 ILE GLU ALA TYR LYS ASN GLU HIS PRO GLN ASP GLU VAL SEQRES 4 A 211 VAL THR ILE ASP LEU PHE ASN THR THR VAL PRO ALA ILE SEQRES 5 A 211 ASP ALA ASP VAL PHE ALA ALA TRP GLY LYS PHE ALA ALA SEQRES 6 A 211 GLY GLU GLY PHE GLU ALA LEU THR GLU VAL GLN GLN GLN SEQRES 7 A 211 LYS VAL ALA ALA MET ASN THR ASN LEU GLU THR PHE MET SEQRES 8 A 211 ASN ALA ASP ARG TYR VAL PHE VAL THR PRO MET TRP ASN SEQRES 9 A 211 PHE SER TYR PRO PRO VAL VAL LYS ALA TYR LEU ASP ASN SEQRES 10 A 211 VAL ALA ILE ALA GLY LYS THR PHE LYS TYR THR GLU ASN SEQRES 11 A 211 GLY PRO VAL GLY LEU LEU GLU GLY LYS LYS ALA LEU HIS SEQRES 12 A 211 ILE GLN ALA THR GLY GLY VAL TYR SER GLU GLY ALA TYR SEQRES 13 A 211 ALA ALA VAL ASP PHE GLY ARG ASN HIS LEU LYS THR VAL SEQRES 14 A 211 LEU GLY PHE VAL GLY VAL ASN ASP THR GLU TYR ILE ALA SEQRES 15 A 211 VAL GLU GLY MET ASN ALA ASN PRO GLU LYS ALA GLN GLU SEQRES 16 A 211 ILE LYS GLU ALA ALA ILE ALA ASN ALA ARG GLU LEU ALA SEQRES 17 A 211 LYS ARG PHE SEQRES 1 B 211 MET THR LYS VAL LEU PHE ILE THR ALA ASN PRO ASN SER SEQRES 2 B 211 ALA GLU GLY SER PHE GLY MET ALA VAL GLY GLU ALA PHE SEQRES 3 B 211 ILE GLU ALA TYR LYS ASN GLU HIS PRO GLN ASP GLU VAL SEQRES 4 B 211 VAL THR ILE ASP LEU PHE ASN THR THR VAL PRO ALA ILE SEQRES 5 B 211 ASP ALA ASP VAL PHE ALA ALA TRP GLY LYS PHE ALA ALA SEQRES 6 B 211 GLY GLU GLY PHE GLU ALA LEU THR GLU VAL GLN GLN GLN SEQRES 7 B 211 LYS VAL ALA ALA MET ASN THR ASN LEU GLU THR PHE MET SEQRES 8 B 211 ASN ALA ASP ARG TYR VAL PHE VAL THR PRO MET TRP ASN SEQRES 9 B 211 PHE SER TYR PRO PRO VAL VAL LYS ALA TYR LEU ASP ASN SEQRES 10 B 211 VAL ALA ILE ALA GLY LYS THR PHE LYS TYR THR GLU ASN SEQRES 11 B 211 GLY PRO VAL GLY LEU LEU GLU GLY LYS LYS ALA LEU HIS SEQRES 12 B 211 ILE GLN ALA THR GLY GLY VAL TYR SER GLU GLY ALA TYR SEQRES 13 B 211 ALA ALA VAL ASP PHE GLY ARG ASN HIS LEU LYS THR VAL SEQRES 14 B 211 LEU GLY PHE VAL GLY VAL ASN ASP THR GLU TYR ILE ALA SEQRES 15 B 211 VAL GLU GLY MET ASN ALA ASN PRO GLU LYS ALA GLN GLU SEQRES 16 B 211 ILE LYS GLU ALA ALA ILE ALA ASN ALA ARG GLU LEU ALA SEQRES 17 B 211 LYS ARG PHE SEQRES 1 C 211 MET THR LYS VAL LEU PHE ILE THR ALA ASN PRO ASN SER SEQRES 2 C 211 ALA GLU GLY SER PHE GLY MET ALA VAL GLY GLU ALA PHE SEQRES 3 C 211 ILE GLU ALA TYR LYS ASN GLU HIS PRO GLN ASP GLU VAL SEQRES 4 C 211 VAL THR ILE ASP LEU PHE ASN THR THR VAL PRO ALA ILE SEQRES 5 C 211 ASP ALA ASP VAL PHE ALA ALA TRP GLY LYS PHE ALA ALA SEQRES 6 C 211 GLY GLU GLY PHE GLU ALA LEU THR GLU VAL GLN GLN GLN SEQRES 7 C 211 LYS VAL ALA ALA MET ASN THR ASN LEU GLU THR PHE MET SEQRES 8 C 211 ASN ALA ASP ARG TYR VAL PHE VAL THR PRO MET TRP ASN SEQRES 9 C 211 PHE SER TYR PRO PRO VAL VAL LYS ALA TYR LEU ASP ASN SEQRES 10 C 211 VAL ALA ILE ALA GLY LYS THR PHE LYS TYR THR GLU ASN SEQRES 11 C 211 GLY PRO VAL GLY LEU LEU GLU GLY LYS LYS ALA LEU HIS SEQRES 12 C 211 ILE GLN ALA THR GLY GLY VAL TYR SER GLU GLY ALA TYR SEQRES 13 C 211 ALA ALA VAL ASP PHE GLY ARG ASN HIS LEU LYS THR VAL SEQRES 14 C 211 LEU GLY PHE VAL GLY VAL ASN ASP THR GLU TYR ILE ALA SEQRES 15 C 211 VAL GLU GLY MET ASN ALA ASN PRO GLU LYS ALA GLN GLU SEQRES 16 C 211 ILE LYS GLU ALA ALA ILE ALA ASN ALA ARG GLU LEU ALA SEQRES 17 C 211 LYS ARG PHE SEQRES 1 D 211 MET THR LYS VAL LEU PHE ILE THR ALA ASN PRO ASN SER SEQRES 2 D 211 ALA GLU GLY SER PHE GLY MET ALA VAL GLY GLU ALA PHE SEQRES 3 D 211 ILE GLU ALA TYR LYS ASN GLU HIS PRO GLN ASP GLU VAL SEQRES 4 D 211 VAL THR ILE ASP LEU PHE ASN THR THR VAL PRO ALA ILE SEQRES 5 D 211 ASP ALA ASP VAL PHE ALA ALA TRP GLY LYS PHE ALA ALA SEQRES 6 D 211 GLY GLU GLY PHE GLU ALA LEU THR GLU VAL GLN GLN GLN SEQRES 7 D 211 LYS VAL ALA ALA MET ASN THR ASN LEU GLU THR PHE MET SEQRES 8 D 211 ASN ALA ASP ARG TYR VAL PHE VAL THR PRO MET TRP ASN SEQRES 9 D 211 PHE SER TYR PRO PRO VAL VAL LYS ALA TYR LEU ASP ASN SEQRES 10 D 211 VAL ALA ILE ALA GLY LYS THR PHE LYS TYR THR GLU ASN SEQRES 11 D 211 GLY PRO VAL GLY LEU LEU GLU GLY LYS LYS ALA LEU HIS SEQRES 12 D 211 ILE GLN ALA THR GLY GLY VAL TYR SER GLU GLY ALA TYR SEQRES 13 D 211 ALA ALA VAL ASP PHE GLY ARG ASN HIS LEU LYS THR VAL SEQRES 14 D 211 LEU GLY PHE VAL GLY VAL ASN ASP THR GLU TYR ILE ALA SEQRES 15 D 211 VAL GLU GLY MET ASN ALA ASN PRO GLU LYS ALA GLN GLU SEQRES 16 D 211 ILE LYS GLU ALA ALA ILE ALA ASN ALA ARG GLU LEU ALA SEQRES 17 D 211 LYS ARG PHE HET FMN A 301 31 HET ORI A 302 23 HET FMN B 301 31 HET ORI B 302 23 HET FMN C 301 31 HET ORI C 302 23 HET FMN D 301 31 HET ORI D 302 23 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ORI 4-[(E)-(4-HYDROXYNAPHTHALEN-1-YL) HETNAM 2 ORI DIAZENYL]BENZENESULFONIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN ORI ORANGE I FORMUL 5 FMN 4(C17 H21 N4 O9 P) FORMUL 6 ORI 4(C16 H12 N2 O4 S) FORMUL 13 HOH *39(H2 O) HELIX 1 1 SER A 17 HIS A 34 1 18 HELIX 2 2 PHE A 45 THR A 47 5 3 HELIX 3 3 ASP A 53 ALA A 65 1 13 HELIX 4 4 GLY A 68 LEU A 72 5 5 HELIX 5 5 THR A 73 ALA A 93 1 21 HELIX 6 6 PRO A 108 ALA A 119 1 12 HELIX 7 7 GLY A 154 VAL A 159 5 6 HELIX 8 8 ASP A 160 VAL A 173 1 14 HELIX 9 9 LYS A 192 LYS A 209 1 18 HELIX 10 10 SER B 17 HIS B 34 1 18 HELIX 11 11 PHE B 45 THR B 47 5 3 HELIX 12 12 ASP B 53 ALA B 65 1 13 HELIX 13 13 GLY B 68 LEU B 72 5 5 HELIX 14 14 THR B 73 ALA B 93 1 21 HELIX 15 15 PRO B 108 ALA B 119 1 12 HELIX 16 16 GLY B 154 VAL B 159 5 6 HELIX 17 17 ASP B 160 VAL B 173 1 14 HELIX 18 18 LYS B 192 LYS B 209 1 18 HELIX 19 19 SER C 17 HIS C 34 1 18 HELIX 20 20 PHE C 45 THR C 47 5 3 HELIX 21 21 ASP C 53 ALA C 65 1 13 HELIX 22 22 GLY C 68 LEU C 72 5 5 HELIX 23 23 THR C 73 ALA C 93 1 21 HELIX 24 24 PRO C 108 ALA C 119 1 12 HELIX 25 25 GLY C 154 VAL C 159 5 6 HELIX 26 26 ASP C 160 VAL C 173 1 14 HELIX 27 27 ASN C 189 GLU C 191 5 3 HELIX 28 28 LYS C 192 LYS C 209 1 18 HELIX 29 29 SER D 17 HIS D 34 1 18 HELIX 30 30 ASP D 53 ALA D 65 1 13 HELIX 31 31 GLY D 68 LEU D 72 5 5 HELIX 32 32 THR D 73 ALA D 93 1 21 HELIX 33 33 PRO D 108 ALA D 119 1 12 HELIX 34 34 GLY D 154 VAL D 159 5 6 HELIX 35 35 ASP D 160 VAL D 173 1 14 HELIX 36 36 LYS D 192 LYS D 209 1 18 SHEET 1 A 5 GLU A 38 ASP A 43 0 SHEET 2 A 5 LYS A 3 THR A 8 1 N PHE A 6 O VAL A 40 SHEET 3 A 5 ARG A 95 PRO A 101 1 O VAL A 97 N ILE A 7 SHEET 4 A 5 LYS A 140 THR A 147 1 O LEU A 142 N PHE A 98 SHEET 5 A 5 THR A 178 GLU A 184 1 O GLU A 179 N HIS A 143 SHEET 1 B 2 PHE A 125 LYS A 126 0 SHEET 2 B 2 VAL A 133 GLY A 134 -1 O VAL A 133 N LYS A 126 SHEET 1 C 5 GLU B 38 ASP B 43 0 SHEET 2 C 5 LYS B 3 THR B 8 1 N VAL B 4 O GLU B 38 SHEET 3 C 5 ARG B 95 PRO B 101 1 O VAL B 97 N ILE B 7 SHEET 4 C 5 LYS B 140 THR B 147 1 O LEU B 142 N PHE B 98 SHEET 5 C 5 THR B 178 GLU B 184 1 O ILE B 181 N HIS B 143 SHEET 1 D 2 PHE B 125 LYS B 126 0 SHEET 2 D 2 VAL B 133 GLY B 134 -1 O VAL B 133 N LYS B 126 SHEET 1 E 5 GLU C 38 ASP C 43 0 SHEET 2 E 5 LYS C 3 THR C 8 1 N PHE C 6 O VAL C 40 SHEET 3 E 5 ARG C 95 PRO C 101 1 O VAL C 97 N ILE C 7 SHEET 4 E 5 LYS C 140 THR C 147 1 O LEU C 142 N PHE C 98 SHEET 5 E 5 THR C 178 GLU C 184 1 O ILE C 181 N HIS C 143 SHEET 1 F 2 PHE C 125 LYS C 126 0 SHEET 2 F 2 VAL C 133 GLY C 134 -1 O VAL C 133 N LYS C 126 SHEET 1 G 5 GLU D 38 ASP D 43 0 SHEET 2 G 5 LYS D 3 THR D 8 1 N PHE D 6 O VAL D 40 SHEET 3 G 5 ARG D 95 PRO D 101 1 O VAL D 97 N ILE D 7 SHEET 4 G 5 LYS D 140 THR D 147 1 O LEU D 142 N PHE D 98 SHEET 5 G 5 THR D 178 GLU D 184 1 O ILE D 181 N HIS D 143 SHEET 1 H 2 PHE D 125 LYS D 126 0 SHEET 2 H 2 VAL D 133 GLY D 134 -1 O VAL D 133 N LYS D 126 SITE 1 AC1 19 ASN A 10 SER A 17 PHE A 18 GLY A 19 SITE 2 AC1 19 PRO A 101 MET A 102 TRP A 103 ASN A 104 SITE 3 AC1 19 PHE A 105 ALA A 146 THR A 147 GLY A 148 SITE 4 AC1 19 GLY A 149 TYR A 151 MET A 186 ASN A 187 SITE 5 AC1 19 ORI A 302 HOH A 401 HOH A 404 SITE 1 AC2 9 ASN A 104 GLY A 149 TYR A 151 ALA A 188 SITE 2 AC2 9 FMN A 301 HOH A 405 PHE B 125 TYR B 127 SITE 3 AC2 9 PHE B 172 SITE 1 AC3 18 ASN B 10 SER B 17 PHE B 18 GLY B 19 SITE 2 AC3 18 PRO B 101 MET B 102 TRP B 103 ASN B 104 SITE 3 AC3 18 PHE B 105 ALA B 146 THR B 147 GLY B 148 SITE 4 AC3 18 GLY B 149 TYR B 151 MET B 186 ASN B 187 SITE 5 AC3 18 ORI B 302 HOH B 405 SITE 1 AC4 9 PHE A 125 TYR A 127 PHE A 172 ASN B 104 SITE 2 AC4 9 GLY B 149 TYR B 151 ALA B 188 FMN B 301 SITE 3 AC4 9 HOH B 403 SITE 1 AC5 19 ASN C 10 SER C 17 PHE C 18 GLY C 19 SITE 2 AC5 19 PRO C 101 MET C 102 TRP C 103 ASN C 104 SITE 3 AC5 19 PHE C 105 ALA C 146 THR C 147 GLY C 148 SITE 4 AC5 19 GLY C 149 TYR C 151 MET C 186 ASN C 187 SITE 5 AC5 19 ORI C 302 HOH C 406 HOH C 408 SITE 1 AC6 7 ASN C 104 TYR C 151 ALA C 188 FMN C 301 SITE 2 AC6 7 HOH C 402 PHE D 125 TYR D 127 SITE 1 AC7 18 ASN D 10 SER D 17 PHE D 18 GLY D 19 SITE 2 AC7 18 PRO D 101 MET D 102 TRP D 103 ASN D 104 SITE 3 AC7 18 PHE D 105 ALA D 146 THR D 147 GLY D 148 SITE 4 AC7 18 GLY D 149 TYR D 151 MET D 186 ASN D 187 SITE 5 AC7 18 ORI D 302 HOH D 404 SITE 1 AC8 7 PHE C 125 TYR C 127 PHE C 172 ASN D 104 SITE 2 AC8 7 TYR D 151 ALA D 188 FMN D 301 CRYST1 191.144 56.567 105.096 90.00 115.72 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005232 0.000000 0.002520 0.00000 SCALE2 0.000000 0.017678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010561 0.00000