HEADER METAL TRANSPORT 12-MAR-13 3W8G TITLE MAMM V260R COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNETOSOME PROTEIN MAMM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 215-318; COMPND 5 SYNONYM: MAGNETOSOME PROTEIN MAMM, CATION EFFLUX PROTEIN FAMILY, MAMM COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNETOSPIRILLUM GRYPHISWALDENSE; SOURCE 3 ORGANISM_TAXID: 431944; SOURCE 4 STRAIN: MSR-1; SOURCE 5 GENE: MAMM, MGI491, MGR_4095; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS CATION DIFFUSION FACILITATOR (CDF), METAL ION TRANSPORT, METAL KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR N.ZEYTUNI,G.DAVIDOV,R.ZARIVACH REVDAT 3 08-NOV-23 3W8G 1 SEQADV REVDAT 2 22-NOV-17 3W8G 1 REMARK REVDAT 1 11-JUN-14 3W8G 0 JRNL AUTH N.ZEYTUNI,R.UEBE,M.MAES,G.DAVIDOV,M.BARAM,O.RASCHDORF, JRNL AUTH 2 A.FRIEDLER,Y.MILLER,D.SCHULER,R.ZARIVACH JRNL TITL BACTERIAL MAGNETOSOME BIOMINERALIZATION - A NOVEL PLATFORM JRNL TITL 2 TO STUDY MOLECULAR MECHANISMS OF HUMAN CDF-RELATED TYPE-II JRNL TITL 3 DIABETES JRNL REF PLOS ONE V. 9 97154 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24819161 JRNL DOI 10.1371/JOURNAL.PONE.0097154 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 8349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 421 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 623 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1336 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 2.46000 REMARK 3 B12 (A**2) : -0.76000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.301 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.233 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1398 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1363 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1894 ; 1.681 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3112 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 8.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 74 ;35.143 ;22.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 245 ;18.721 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 210 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1627 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 703 ; 2.177 ; 2.298 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 702 ; 2.178 ; 2.298 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 879 ; 3.525 ; 3.426 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 695 ; 2.192 ; 2.671 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 463 ; 0.380 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 705 ; 1.020 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 463 ; 5.250 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 705 ; 6.580 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -16.4606 42.9433 -4.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.0480 T22: 0.0349 REMARK 3 T33: 0.0253 T12: 0.0017 REMARK 3 T13: -0.0213 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0387 L22: 1.2112 REMARK 3 L33: 0.0387 L12: -0.7214 REMARK 3 L13: -0.1141 L23: 0.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.0560 S12: 0.0036 S13: 0.0688 REMARK 3 S21: 0.0703 S22: 0.0630 S23: -0.0482 REMARK 3 S31: 0.0273 S32: 0.0067 S33: -0.0070 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 212 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1237 42.1322 -25.3315 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0322 REMARK 3 T33: 0.0392 T12: -0.0039 REMARK 3 T13: -0.0080 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 1.0242 L22: 1.5747 REMARK 3 L33: 0.0761 L12: 0.2936 REMARK 3 L13: -0.0283 L23: 0.3180 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0194 S13: -0.1051 REMARK 3 S21: -0.0474 S22: 0.0357 S23: -0.0763 REMARK 3 S31: -0.0005 S32: 0.0070 S33: -0.0157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000096017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3W5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 22.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 7, 0.2M MGCL, 15% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.79833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.59667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.19750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.99583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.39917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 292 REMARK 465 ILE A 293 REMARK 465 GLY A 294 REMARK 465 ASP A 295 REMARK 465 THR A 296 REMARK 465 THR A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 SER A 300 REMARK 465 PHE A 301 REMARK 465 SER A 302 REMARK 465 ASP A 303 REMARK 465 GLN A 304 REMARK 465 PRO A 305 REMARK 465 LEU A 306 REMARK 465 SER A 307 REMARK 465 PHE A 308 REMARK 465 ASP A 309 REMARK 465 GLU A 310 REMARK 465 VAL A 311 REMARK 465 MET A 312 REMARK 465 LEU A 313 REMARK 465 SER A 314 REMARK 465 LYS A 315 REMARK 465 VAL A 316 REMARK 465 ASP A 317 REMARK 465 ASN A 318 REMARK 465 ASP B 303 REMARK 465 GLN B 304 REMARK 465 PRO B 305 REMARK 465 LEU B 306 REMARK 465 SER B 307 REMARK 465 PHE B 308 REMARK 465 ASP B 309 REMARK 465 GLU B 310 REMARK 465 VAL B 311 REMARK 465 MET B 312 REMARK 465 LEU B 313 REMARK 465 SER B 314 REMARK 465 LYS B 315 REMARK 465 VAL B 316 REMARK 465 ASP B 317 REMARK 465 ASN B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 283 ND1 HIS B 285 2.06 REMARK 500 OE1 GLN B 244 NH2 ARG B 280 2.10 REMARK 500 OE1 GLU B 289 O HOH B 421 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 255 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 232 74.82 -119.32 REMARK 500 ARG B 232 66.32 -115.44 REMARK 500 GLU B 292 -53.05 -143.18 REMARK 500 ILE B 293 70.84 49.43 REMARK 500 THR B 296 -11.36 -172.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 291 GLU B 292 30.87 REMARK 500 ARG B 291 GLU B 292 31.20 REMARK 500 GLU B 292 ILE B 293 -133.35 REMARK 500 THR B 296 THR B 297 -134.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W5X RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3W5Y RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: 3W5Z RELATED DB: PDB REMARK 900 D249A MUTANT REMARK 900 RELATED ID: 3W60 RELATED DB: PDB REMARK 900 H264A MUTANT REMARK 900 RELATED ID: 3W61 RELATED DB: PDB REMARK 900 H285A MUTANT REMARK 900 RELATED ID: 3W62 RELATED DB: PDB REMARK 900 E289A MUTANT REMARK 900 RELATED ID: 3W63 RELATED DB: PDB REMARK 900 215-293 C2221 REMARK 900 RELATED ID: 3W64 RELATED DB: PDB REMARK 900 215-293 P212121 REMARK 900 RELATED ID: 3W65 RELATED DB: PDB REMARK 900 D249A & H285A DOUBLE MUTANT REMARK 900 RELATED ID: 3W66 RELATED DB: PDB REMARK 900 D249A & H262A DOUBLE MUTANT DBREF 3W8G A 215 318 UNP Q6NE57 Q6NE57_9PROT 215 318 DBREF 3W8G B 215 318 UNP Q6NE57 Q6NE57_9PROT 215 318 SEQADV 3W8G GLY A 211 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G SER A 212 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G HIS A 213 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G MET A 214 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G ARG A 260 UNP Q6NE57 VAL 260 ENGINEERED MUTATION SEQADV 3W8G GLY B 211 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G SER B 212 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G HIS B 213 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G MET B 214 UNP Q6NE57 EXPRESSION TAG SEQADV 3W8G ARG B 260 UNP Q6NE57 VAL 260 ENGINEERED MUTATION SEQRES 1 A 108 GLY SER HIS MET GLU ALA VAL GLN ASN ARG ILE VAL GLU SEQRES 2 A 108 ALA ALA GLU ARG VAL PRO GLY VAL ARG GLY VAL ILE HIS SEQRES 3 A 108 LEU ARG ALA ARG TYR VAL GLY GLN ASP ILE TRP ALA ASP SEQRES 4 A 108 MET ILE ILE GLY VAL ASP PRO GLU ASN THR ARG GLU GLN SEQRES 5 A 108 ALA HIS GLU ILE CYS GLU ALA VAL GLN ALA ALA VAL CYS SEQRES 6 A 108 GLY LYS ILE ARG ARG ILE GLU SER LEU HIS VAL SER ALA SEQRES 7 A 108 GLU ALA ARG GLU ILE GLY ASP THR THR LYS PRO SER PHE SEQRES 8 A 108 SER ASP GLN PRO LEU SER PHE ASP GLU VAL MET LEU SER SEQRES 9 A 108 LYS VAL ASP ASN SEQRES 1 B 108 GLY SER HIS MET GLU ALA VAL GLN ASN ARG ILE VAL GLU SEQRES 2 B 108 ALA ALA GLU ARG VAL PRO GLY VAL ARG GLY VAL ILE HIS SEQRES 3 B 108 LEU ARG ALA ARG TYR VAL GLY GLN ASP ILE TRP ALA ASP SEQRES 4 B 108 MET ILE ILE GLY VAL ASP PRO GLU ASN THR ARG GLU GLN SEQRES 5 B 108 ALA HIS GLU ILE CYS GLU ALA VAL GLN ALA ALA VAL CYS SEQRES 6 B 108 GLY LYS ILE ARG ARG ILE GLU SER LEU HIS VAL SER ALA SEQRES 7 B 108 GLU ALA ARG GLU ILE GLY ASP THR THR LYS PRO SER PHE SEQRES 8 B 108 SER ASP GLN PRO LEU SER PHE ASP GLU VAL MET LEU SER SEQRES 9 B 108 LYS VAL ASP ASN FORMUL 3 HOH *88(H2 O) HELIX 1 1 SER A 212 ARG A 227 1 16 HELIX 2 2 THR A 259 ILE A 278 1 20 HELIX 3 3 SER B 212 ARG B 227 1 16 HELIX 4 4 THR B 259 ILE B 278 1 20 SHEET 1 A 3 VAL A 234 VAL A 242 0 SHEET 2 A 3 ASP A 245 VAL A 254 -1 O ASP A 249 N ARG A 238 SHEET 3 A 3 ILE A 281 ALA A 290 1 O HIS A 285 N MET A 250 SHEET 1 B 4 ILE B 281 ALA B 290 0 SHEET 2 B 4 ASP B 245 VAL B 254 1 N MET B 250 O HIS B 285 SHEET 3 B 4 VAL B 234 VAL B 242 -1 N HIS B 236 O ILE B 251 SHEET 4 B 4 SER B 300 SER B 302 1 O SER B 300 N LEU B 237 CISPEP 1 GLY B 211 SER B 212 0 3.12 CISPEP 2 ASP B 295 THR B 296 0 -4.72 CRYST1 68.481 68.481 56.395 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014603 0.008431 0.000000 0.00000 SCALE2 0.000000 0.016862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017732 0.00000