HEADER OXIDOREDUCTASE 22-MAR-13 3W8X TITLE THE COMPLEX STRUCTURE OF ENCM WITH TRIFLUOROTRIKETIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FAD-DEPENDENT OXYGENASE ENCM; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.12.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES MARITIMUS; SOURCE 3 ORGANISM_TAXID: 115828; SOURCE 4 GENE: ENCM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOOXYGENASE, FLAVIN BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TEUFEL,A.MIYANAGA,F.STULL,Q.MICHAUDEL,G.LOUIE,J.P.NOEL,P.S.BARAN, AUTHOR 2 B.PALFEY,B.S.MOORE REVDAT 3 08-NOV-23 3W8X 1 REMARK SEQADV REVDAT 2 11-DEC-13 3W8X 1 JRNL REVDAT 1 30-OCT-13 3W8X 0 JRNL AUTH R.TEUFEL,A.MIYANAGA,Q.MICHAUDEL,F.STULL,G.LOUIE,J.P.NOEL, JRNL AUTH 2 P.S.BARAN,B.PALFEY,B.S.MOORE JRNL TITL FLAVIN-MEDIATED DUAL OXIDATION CONTROLS AN ENZYMATIC JRNL TITL 2 FAVORSKII-TYPE REARRANGEMENT. JRNL REF NATURE V. 503 552 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24162851 JRNL DOI 10.1038/NATURE12643 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 79007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5505 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 293 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 651 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.03000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : -1.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.763 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7353 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6798 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10041 ; 2.076 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15564 ; 1.058 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 920 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;34.334 ;22.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1060 ;13.566 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1087 ; 0.200 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8408 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1730 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 462 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6409 13.8123 36.5798 REMARK 3 T TENSOR REMARK 3 T11: 0.0020 T22: 0.0227 REMARK 3 T33: 0.0521 T12: -0.0003 REMARK 3 T13: -0.0052 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.1037 L22: 0.0806 REMARK 3 L33: 0.1673 L12: -0.0195 REMARK 3 L13: -0.0716 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.0195 S13: 0.0116 REMARK 3 S21: 0.0077 S22: 0.0144 S23: 0.0138 REMARK 3 S31: 0.0077 S32: 0.0331 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 462 REMARK 3 ORIGIN FOR THE GROUP (A): 12.7728 -0.1148 7.1348 REMARK 3 T TENSOR REMARK 3 T11: 0.0155 T22: 0.0186 REMARK 3 T33: 0.0387 T12: 0.0055 REMARK 3 T13: -0.0049 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0906 L22: 0.0795 REMARK 3 L33: 0.2321 L12: -0.0332 REMARK 3 L13: 0.0155 L23: 0.0448 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0071 S13: 0.0085 REMARK 3 S21: -0.0231 S22: 0.0035 S23: 0.0146 REMARK 3 S31: 0.0177 S32: 0.0497 S33: -0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3W8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000096034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83197 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3W8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM DTT, 0.1M HEPES-NA, 0.2M CALCIUM REMARK 280 ACETATE, 20% PEG 3350, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.58750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 463 REMARK 465 PRO A 464 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 463 REMARK 465 PRO B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 702 O HOH A 965 1.92 REMARK 500 ND1 HIS A 78 C8M FAD A 600 2.04 REMARK 500 ND1 HIS B 78 C8M FAD B 600 2.04 REMARK 500 O HOH B 740 O HOH B 989 2.06 REMARK 500 O HOH B 754 O HOH B 990 2.12 REMARK 500 OD2 ASP A 173 O HOH A 1004 2.14 REMARK 500 O HOH B 841 O HOH B 959 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 388 CB TRP B 388 CG 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 186 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 35 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LEU B 116 CB - CG - CD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG B 215 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 365 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 390 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP B 394 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 402 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 359 -106.90 -99.13 REMARK 500 PHE B 3 72.37 -119.73 REMARK 500 HIS B 291 30.35 -99.45 REMARK 500 LEU B 359 -103.90 -97.07 REMARK 500 TRP B 388 -168.32 -160.09 REMARK 500 LEU B 455 79.95 -101.21 REMARK 500 ASN B 456 -178.90 -172.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 461 SER A 462 70.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FTK A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FTK B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W8W RELATED DB: PDB REMARK 900 RELATED ID: 3W8Y RELATED DB: PDB REMARK 900 RELATED ID: 3W8Z RELATED DB: PDB DBREF 3W8X A 1 464 UNP Q9KHK2 Q9KHK2_9ACTO 1 464 DBREF 3W8X B 1 464 UNP Q9KHK2 Q9KHK2_9ACTO 1 464 SEQADV 3W8X GLY A -3 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X SER A -2 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X HIS A -1 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X GLY A 0 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X GLY B -3 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X SER B -2 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X HIS B -1 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8X GLY B 0 UNP Q9KHK2 EXPRESSION TAG SEQRES 1 A 468 GLY SER HIS GLY MET GLN PHE PRO GLN LEU ASP PRO ALA SEQRES 2 A 468 THR LEU ALA ALA PHE SER ALA ALA PHE ARG GLY GLU LEU SEQRES 3 A 468 ILE TRP PRO SER ASP ALA ASP TYR ASP GLU ALA ARG ARG SEQRES 4 A 468 ILE TRP ASN GLY THR ILE ASP ARG ARG PRO ALA LEU ILE SEQRES 5 A 468 ALA ARG CYS THR SER THR PRO ASP VAL VAL ALA ALA VAL SEQRES 6 A 468 SER PHE ALA ARG LYS SER GLY LEU LEU VAL ALA VAL ARG SEQRES 7 A 468 GLY GLY GLY HIS SER MET ALA GLY HIS SER VAL CYS ASP SEQRES 8 A 468 GLY GLY ILE VAL ILE ASP LEU SER LEU MET ASN SER ILE SEQRES 9 A 468 LYS VAL SER ARG ARG LEU ARG ARG ALA ARG ALA GLN GLY SEQRES 10 A 468 GLY CYS LEU LEU GLY ALA PHE ASP THR ALA THR GLN ALA SEQRES 11 A 468 HIS MET LEU ALA THR PRO ALA GLY VAL VAL SER HIS THR SEQRES 12 A 468 GLY LEU GLY GLY LEU VAL LEU GLY GLY GLY PHE GLY TRP SEQRES 13 A 468 LEU SER ARG LYS TYR GLY LEU SER ILE ASP ASN LEU THR SEQRES 14 A 468 SER VAL GLU ILE VAL THR ALA ASP GLY GLY VAL LEU THR SEQRES 15 A 468 ALA SER ASP THR GLU ASN PRO ASP LEU PHE TRP ALA VAL SEQRES 16 A 468 ARG GLY GLY GLY GLY ASN PHE GLY VAL VAL THR ALA PHE SEQRES 17 A 468 GLU PHE ASP LEU HIS ARG VAL GLY PRO VAL ARG PHE ALA SEQRES 18 A 468 SER THR TYR TYR SER LEU ASP GLU GLY PRO GLN VAL ILE SEQRES 19 A 468 ARG ALA TRP ARG ASP HIS MET ALA THR ALA PRO ASP GLU SEQRES 20 A 468 LEU THR TRP ALA LEU TYR LEU ARG LEU ALA PRO PRO LEU SEQRES 21 A 468 PRO GLU LEU PRO ALA ASP MET HIS GLY LYS PRO VAL ILE SEQRES 22 A 468 CYS ALA MET SER CYS TRP ILE GLY ASP PRO HIS GLU GLY SEQRES 23 A 468 GLU ARG GLN LEU GLU SER ILE LEU HIS ALA GLY LYS PRO SEQRES 24 A 468 HIS GLY LEU THR LYS ALA THR LEU PRO TYR ARG ALA LEU SEQRES 25 A 468 GLN ALA TYR SER PHE PRO GLY ALA VAL VAL PRO ASP ARG SEQRES 26 A 468 ILE TYR THR LYS SER GLY TYR LEU ASN GLU LEU SER ASP SEQRES 27 A 468 GLU ALA THR ASP THR VAL LEU GLU HIS ALA ALA ASP ILE SEQRES 28 A 468 ALA SER PRO PHE THR GLN LEU GLU LEU LEU TYR LEU GLY SEQRES 29 A 468 GLY ALA VAL ALA ARG VAL PRO ASP ASP ALA THR ALA TYR SEQRES 30 A 468 PRO ASN ARG GLN SER PRO PHE VAL THR ASN LEU ALA ALA SEQRES 31 A 468 ALA TRP MET ASP PRO THR GLU ASP ALA ARG HIS THR ALA SEQRES 32 A 468 TRP ALA ARG GLU GLY TYR ARG ALA LEU ALA GLY HIS LEU SEQRES 33 A 468 SER GLY GLY TYR VAL ASN PHE MET ASN PRO GLY GLU ALA SEQRES 34 A 468 ASP ARG THR ARG GLU ALA TYR GLY ALA ALA LYS PHE GLU SEQRES 35 A 468 ARG LEU GLN GLY VAL LYS ALA LYS TYR ASP PRO THR ASN SEQRES 36 A 468 LEU PHE ARG LEU ASN GLN ASN ILE PRO PRO SER SER PRO SEQRES 1 B 468 GLY SER HIS GLY MET GLN PHE PRO GLN LEU ASP PRO ALA SEQRES 2 B 468 THR LEU ALA ALA PHE SER ALA ALA PHE ARG GLY GLU LEU SEQRES 3 B 468 ILE TRP PRO SER ASP ALA ASP TYR ASP GLU ALA ARG ARG SEQRES 4 B 468 ILE TRP ASN GLY THR ILE ASP ARG ARG PRO ALA LEU ILE SEQRES 5 B 468 ALA ARG CYS THR SER THR PRO ASP VAL VAL ALA ALA VAL SEQRES 6 B 468 SER PHE ALA ARG LYS SER GLY LEU LEU VAL ALA VAL ARG SEQRES 7 B 468 GLY GLY GLY HIS SER MET ALA GLY HIS SER VAL CYS ASP SEQRES 8 B 468 GLY GLY ILE VAL ILE ASP LEU SER LEU MET ASN SER ILE SEQRES 9 B 468 LYS VAL SER ARG ARG LEU ARG ARG ALA ARG ALA GLN GLY SEQRES 10 B 468 GLY CYS LEU LEU GLY ALA PHE ASP THR ALA THR GLN ALA SEQRES 11 B 468 HIS MET LEU ALA THR PRO ALA GLY VAL VAL SER HIS THR SEQRES 12 B 468 GLY LEU GLY GLY LEU VAL LEU GLY GLY GLY PHE GLY TRP SEQRES 13 B 468 LEU SER ARG LYS TYR GLY LEU SER ILE ASP ASN LEU THR SEQRES 14 B 468 SER VAL GLU ILE VAL THR ALA ASP GLY GLY VAL LEU THR SEQRES 15 B 468 ALA SER ASP THR GLU ASN PRO ASP LEU PHE TRP ALA VAL SEQRES 16 B 468 ARG GLY GLY GLY GLY ASN PHE GLY VAL VAL THR ALA PHE SEQRES 17 B 468 GLU PHE ASP LEU HIS ARG VAL GLY PRO VAL ARG PHE ALA SEQRES 18 B 468 SER THR TYR TYR SER LEU ASP GLU GLY PRO GLN VAL ILE SEQRES 19 B 468 ARG ALA TRP ARG ASP HIS MET ALA THR ALA PRO ASP GLU SEQRES 20 B 468 LEU THR TRP ALA LEU TYR LEU ARG LEU ALA PRO PRO LEU SEQRES 21 B 468 PRO GLU LEU PRO ALA ASP MET HIS GLY LYS PRO VAL ILE SEQRES 22 B 468 CYS ALA MET SER CYS TRP ILE GLY ASP PRO HIS GLU GLY SEQRES 23 B 468 GLU ARG GLN LEU GLU SER ILE LEU HIS ALA GLY LYS PRO SEQRES 24 B 468 HIS GLY LEU THR LYS ALA THR LEU PRO TYR ARG ALA LEU SEQRES 25 B 468 GLN ALA TYR SER PHE PRO GLY ALA VAL VAL PRO ASP ARG SEQRES 26 B 468 ILE TYR THR LYS SER GLY TYR LEU ASN GLU LEU SER ASP SEQRES 27 B 468 GLU ALA THR ASP THR VAL LEU GLU HIS ALA ALA ASP ILE SEQRES 28 B 468 ALA SER PRO PHE THR GLN LEU GLU LEU LEU TYR LEU GLY SEQRES 29 B 468 GLY ALA VAL ALA ARG VAL PRO ASP ASP ALA THR ALA TYR SEQRES 30 B 468 PRO ASN ARG GLN SER PRO PHE VAL THR ASN LEU ALA ALA SEQRES 31 B 468 ALA TRP MET ASP PRO THR GLU ASP ALA ARG HIS THR ALA SEQRES 32 B 468 TRP ALA ARG GLU GLY TYR ARG ALA LEU ALA GLY HIS LEU SEQRES 33 B 468 SER GLY GLY TYR VAL ASN PHE MET ASN PRO GLY GLU ALA SEQRES 34 B 468 ASP ARG THR ARG GLU ALA TYR GLY ALA ALA LYS PHE GLU SEQRES 35 B 468 ARG LEU GLN GLY VAL LYS ALA LYS TYR ASP PRO THR ASN SEQRES 36 B 468 LEU PHE ARG LEU ASN GLN ASN ILE PRO PRO SER SER PRO HET FAD A 600 53 HET FTK A 601 18 HET FAD B 600 53 HET FTK B 601 18 HET GOL B 602 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FTK 6,6,6-TRIFLUORO-1-PHENYLHEXANE-1,3,5-TRIONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 FTK 2(C12 H9 F3 O3) FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *651(H2 O) HELIX 1 1 ASP A 7 PHE A 18 1 12 HELIX 2 2 ASP A 29 ARG A 34 1 6 HELIX 3 3 SER A 53 GLY A 68 1 16 HELIX 4 4 LEU A 116 ALA A 126 1 11 HELIX 5 5 GLY A 140 GLY A 148 1 9 HELIX 6 6 LEU A 153 GLY A 158 1 6 HELIX 7 7 LEU A 159 ASP A 162 5 4 HELIX 8 8 ASN A 184 ARG A 192 1 9 HELIX 9 9 GLY A 194 GLY A 199 5 6 HELIX 10 10 GLU A 225 ALA A 238 1 14 HELIX 11 11 PRO A 260 HIS A 264 5 5 HELIX 12 12 ASP A 278 LEU A 290 1 13 HELIX 13 13 PRO A 304 SER A 312 1 9 HELIX 14 14 SER A 333 ASP A 346 1 14 HELIX 15 15 GLY A 361 VAL A 366 1 6 HELIX 16 16 PRO A 367 THR A 371 5 5 HELIX 17 17 ASP A 390 THR A 392 5 3 HELIX 18 18 GLU A 393 ALA A 409 1 17 HELIX 19 19 TYR A 416 MET A 420 5 5 HELIX 20 20 GLU A 424 ASP A 426 5 3 HELIX 21 21 ARG A 427 GLY A 433 1 7 HELIX 22 22 GLY A 433 ASP A 448 1 16 HELIX 23 23 ASP B 7 PHE B 18 1 12 HELIX 24 24 ASP B 29 ARG B 34 1 6 HELIX 25 25 SER B 53 GLY B 68 1 16 HELIX 26 26 LEU B 116 ALA B 126 1 11 HELIX 27 27 GLY B 140 GLY B 148 1 9 HELIX 28 28 LEU B 153 GLY B 158 1 6 HELIX 29 29 LEU B 159 ASP B 162 5 4 HELIX 30 30 ASN B 184 ARG B 192 1 9 HELIX 31 31 GLY B 194 GLY B 199 5 6 HELIX 32 32 GLU B 225 THR B 239 1 15 HELIX 33 33 PRO B 260 HIS B 264 5 5 HELIX 34 34 ASP B 278 HIS B 291 1 14 HELIX 35 35 PRO B 304 SER B 312 1 9 HELIX 36 36 SER B 333 ASP B 346 1 14 HELIX 37 37 GLY B 361 VAL B 366 1 6 HELIX 38 38 PRO B 367 THR B 371 5 5 HELIX 39 39 ASP B 390 THR B 392 5 3 HELIX 40 40 GLU B 393 ALA B 409 1 17 HELIX 41 41 GLY B 410 LEU B 412 5 3 HELIX 42 42 TYR B 416 MET B 420 5 5 HELIX 43 43 GLU B 424 ASP B 426 5 3 HELIX 44 44 ARG B 427 GLY B 433 1 7 HELIX 45 45 GLY B 433 ASP B 448 1 16 SHEET 1 A 4 GLU A 21 ILE A 23 0 SHEET 2 A 4 LEU A 47 ARG A 50 -1 O ARG A 50 N GLU A 21 SHEET 3 A 4 ILE A 90 ASP A 93 1 O VAL A 91 N ALA A 49 SHEET 4 A 4 VAL A 71 ARG A 74 1 N ALA A 72 O ILE A 90 SHEET 1 B 5 ILE A 100 SER A 103 0 SHEET 2 B 5 ARG A 108 GLN A 112 -1 O ARG A 110 N LYS A 101 SHEET 3 B 5 VAL A 200 ASP A 207 -1 O PHE A 204 N ALA A 111 SHEET 4 B 5 LEU A 164 VAL A 170 -1 N VAL A 170 O VAL A 200 SHEET 5 B 5 VAL A 176 SER A 180 -1 O LEU A 177 N ILE A 169 SHEET 1 C 2 LEU A 129 ALA A 130 0 SHEET 2 C 2 HIS A 209 ARG A 210 -1 O HIS A 209 N ALA A 130 SHEET 1 D 8 HIS A 296 LEU A 303 0 SHEET 2 D 8 VAL A 214 SER A 222 -1 N VAL A 214 O LEU A 303 SHEET 3 D 8 PRO A 267 TRP A 275 -1 O ALA A 271 N THR A 219 SHEET 4 D 8 LEU A 244 LEU A 252 -1 N TYR A 249 O CYS A 270 SHEET 5 D 8 GLN A 353 TYR A 358 -1 O LEU A 354 N LEU A 250 SHEET 6 D 8 PHE A 380 TRP A 388 -1 O VAL A 381 N LEU A 357 SHEET 7 D 8 ARG A 321 LEU A 329 -1 N LYS A 325 O LEU A 384 SHEET 8 D 8 LEU A 412 SER A 413 -1 O SER A 413 N TYR A 328 SHEET 1 E 4 GLU B 21 ILE B 23 0 SHEET 2 E 4 LEU B 47 ARG B 50 -1 O ARG B 50 N GLU B 21 SHEET 3 E 4 ILE B 90 ASP B 93 1 O VAL B 91 N ALA B 49 SHEET 4 E 4 VAL B 71 ARG B 74 1 N ALA B 72 O ILE B 92 SHEET 1 F 5 ILE B 100 SER B 103 0 SHEET 2 F 5 ARG B 108 GLN B 112 -1 O ARG B 108 N SER B 103 SHEET 3 F 5 VAL B 200 ASP B 207 -1 O PHE B 204 N ALA B 111 SHEET 4 F 5 LEU B 164 VAL B 170 -1 N THR B 165 O GLU B 205 SHEET 5 F 5 VAL B 176 SER B 180 -1 O LEU B 177 N ILE B 169 SHEET 1 G 2 LEU B 129 ALA B 130 0 SHEET 2 G 2 HIS B 209 ARG B 210 -1 O HIS B 209 N ALA B 130 SHEET 1 H 7 HIS B 296 LEU B 303 0 SHEET 2 H 7 VAL B 214 SER B 222 -1 N SER B 218 O THR B 299 SHEET 3 H 7 PRO B 267 TRP B 275 -1 O ILE B 269 N TYR B 221 SHEET 4 H 7 LEU B 244 LEU B 252 -1 N TYR B 249 O CYS B 270 SHEET 5 H 7 GLN B 353 TYR B 358 -1 O LEU B 356 N LEU B 248 SHEET 6 H 7 PHE B 380 TRP B 388 -1 O ASN B 383 N GLU B 355 SHEET 7 H 7 ARG B 321 LEU B 329 -1 N LYS B 325 O LEU B 384 CISPEP 1 SER A 312 PHE A 313 0 -14.37 CISPEP 2 SER B 312 PHE B 313 0 -17.93 SITE 1 AC1 35 TRP A 37 VAL A 73 ARG A 74 GLY A 75 SITE 2 AC1 35 GLY A 76 GLY A 77 HIS A 78 SER A 79 SITE 3 AC1 35 MET A 80 SER A 84 LEU A 94 GLY A 113 SITE 4 AC1 35 GLY A 134 VAL A 135 GLY A 140 GLY A 142 SITE 5 AC1 35 GLY A 143 LEU A 144 LEU A 146 GLY A 149 SITE 6 AC1 35 PHE A 150 GLY A 196 GLY A 199 VAL A 201 SITE 7 AC1 35 TYR A 416 ASN A 418 LEU A 455 ASN A 456 SITE 8 AC1 35 FTK A 601 HOH A 765 HOH A 769 HOH A 800 SITE 9 AC1 35 HOH A 802 HOH A 803 HOH A 837 SITE 1 AC2 11 MET A 80 VAL A 135 PHE A 150 GLY A 151 SITE 2 AC2 11 TRP A 152 THR A 245 TYR A 249 GLU A 355 SITE 3 AC2 11 LEU A 357 ASN A 383 FAD A 600 SITE 1 AC3 35 TRP B 37 VAL B 73 ARG B 74 GLY B 75 SITE 2 AC3 35 GLY B 76 GLY B 77 HIS B 78 SER B 79 SITE 3 AC3 35 MET B 80 SER B 84 LEU B 94 GLY B 113 SITE 4 AC3 35 GLY B 134 VAL B 135 GLY B 140 GLY B 142 SITE 5 AC3 35 GLY B 143 LEU B 144 LEU B 146 GLY B 149 SITE 6 AC3 35 PHE B 150 GLY B 196 GLY B 199 VAL B 201 SITE 7 AC3 35 TYR B 416 ASN B 418 LEU B 455 ASN B 456 SITE 8 AC3 35 FTK B 601 HOH B 770 HOH B 782 HOH B 794 SITE 9 AC3 35 HOH B 813 HOH B 819 HOH B 834 SITE 1 AC4 11 MET B 80 VAL B 135 PHE B 150 GLY B 151 SITE 2 AC4 11 TRP B 152 TYR B 249 PHE B 313 GLU B 355 SITE 3 AC4 11 LEU B 357 ASN B 383 FAD B 600 SITE 1 AC5 8 ARG B 155 MET B 237 ALA B 238 ALA B 240 SITE 2 AC5 8 GLY B 360 GLY B 361 HOH B 814 HOH B 889 CRYST1 71.246 85.175 79.363 90.00 99.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014036 0.000000 0.002341 0.00000 SCALE2 0.000000 0.011741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012774 0.00000