HEADER OXIDOREDUCTASE 22-MAR-13 3W8Z TITLE THE COMPLEX STRUCTURE OF ENCM WITH HYDROXYTETRAKETIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FAD-DEPENDENT OXYGENASE ENCM; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.12.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES MARITIMUS; SOURCE 3 ORGANISM_TAXID: 115828; SOURCE 4 GENE: ENCM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MONOOXYGENASE, FLAVIN BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.TEUFEL,A.MIYANAGA,F.STULL,Q.MICHAUDEL,G.LOUIE,J.P.NOEL,P.S.BARAN, AUTHOR 2 B.PALFEY,B.S.MOORE REVDAT 3 08-NOV-23 3W8Z 1 REMARK SEQADV REVDAT 2 11-DEC-13 3W8Z 1 JRNL REVDAT 1 30-OCT-13 3W8Z 0 JRNL AUTH R.TEUFEL,A.MIYANAGA,Q.MICHAUDEL,F.STULL,G.LOUIE,J.P.NOEL, JRNL AUTH 2 P.S.BARAN,B.PALFEY,B.S.MOORE JRNL TITL FLAVIN-MEDIATED DUAL OXIDATION CONTROLS AN ENZYMATIC JRNL TITL 2 FAVORSKII-TYPE REARRANGEMENT. JRNL REF NATURE V. 503 552 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24162851 JRNL DOI 10.1038/NATURE12643 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6008 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 353 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7008 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 142 REMARK 3 SOLVENT ATOMS : 724 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.54000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.114 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.571 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7342 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10024 ; 2.161 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 919 ; 6.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;33.980 ;22.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1059 ;14.837 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 64 ;16.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1085 ; 0.217 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5722 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 461 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4016 13.8643 36.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.0055 T22: 0.0172 REMARK 3 T33: 0.0420 T12: -0.0006 REMARK 3 T13: -0.0038 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.2529 L22: 0.1682 REMARK 3 L33: 0.2946 L12: -0.0440 REMARK 3 L13: -0.1156 L23: 0.1031 REMARK 3 S TENSOR REMARK 3 S11: 0.0030 S12: -0.0303 S13: 0.0168 REMARK 3 S21: 0.0241 S22: 0.0191 S23: 0.0158 REMARK 3 S31: 0.0087 S32: 0.0529 S33: -0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 462 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6609 -0.1999 7.0232 REMARK 3 T TENSOR REMARK 3 T11: 0.0256 T22: 0.0224 REMARK 3 T33: 0.0301 T12: 0.0108 REMARK 3 T13: -0.0059 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.2089 L22: 0.1676 REMARK 3 L33: 0.4063 L12: -0.0522 REMARK 3 L13: 0.0134 L23: 0.1089 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.0105 S13: 0.0130 REMARK 3 S21: -0.0420 S22: 0.0051 S23: 0.0097 REMARK 3 S31: 0.0348 S32: 0.0797 S33: -0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000096036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86217 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 42.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3W8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM DTT, 0.1M HEPES-NA (PH 7.5), 0.2M REMARK 280 CALCIUM ACETATE, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.56000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 462 REMARK 465 SER A 463 REMARK 465 PRO A 464 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 463 REMARK 465 PRO B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 78 C8M FAD A 600 1.91 REMARK 500 ND1 HIS B 78 C8M FAD B 600 1.91 REMARK 500 O HOH A 946 O HOH A 1062 1.94 REMARK 500 O HOH B 758 O HOH B 824 2.00 REMARK 500 O HOH A 702 O HOH A 978 2.00 REMARK 500 O HOH B 706 O HOH B 1020 2.05 REMARK 500 O HOH A 701 O HOH A 1074 2.08 REMARK 500 O HOH B 734 O HOH B 838 2.09 REMARK 500 O HOH A 763 O HOH A 1058 2.17 REMARK 500 O HOH B 846 O HOH B 877 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1033 O HOH A 1073 2546 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 400 CG TRP A 400 CD1 0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 29 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 VAL A 340 CG1 - CB - CG2 ANGL. DEV. = 10.9 DEGREES REMARK 500 LEU B 116 CB - CG - CD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG B 306 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP B 334 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 390 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 390 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 402 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 291 30.87 -99.71 REMARK 500 LEU A 359 -106.80 -95.77 REMARK 500 ASN A 375 20.71 80.41 REMARK 500 PHE B 3 70.24 -115.72 REMARK 500 LEU B 359 -104.98 -95.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTK A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HTK B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W8W RELATED DB: PDB REMARK 900 RELATED ID: 3W8X RELATED DB: PDB REMARK 900 RELATED ID: 3W8Y RELATED DB: PDB DBREF 3W8Z A 1 464 UNP Q9KHK2 Q9KHK2_9ACTO 1 464 DBREF 3W8Z B 1 464 UNP Q9KHK2 Q9KHK2_9ACTO 1 464 SEQADV 3W8Z GLY A -3 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z SER A -2 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z HIS A -1 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z GLY A 0 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z GLY B -3 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z SER B -2 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z HIS B -1 UNP Q9KHK2 EXPRESSION TAG SEQADV 3W8Z GLY B 0 UNP Q9KHK2 EXPRESSION TAG SEQRES 1 A 468 GLY SER HIS GLY MET GLN PHE PRO GLN LEU ASP PRO ALA SEQRES 2 A 468 THR LEU ALA ALA PHE SER ALA ALA PHE ARG GLY GLU LEU SEQRES 3 A 468 ILE TRP PRO SER ASP ALA ASP TYR ASP GLU ALA ARG ARG SEQRES 4 A 468 ILE TRP ASN GLY THR ILE ASP ARG ARG PRO ALA LEU ILE SEQRES 5 A 468 ALA ARG CYS THR SER THR PRO ASP VAL VAL ALA ALA VAL SEQRES 6 A 468 SER PHE ALA ARG LYS SER GLY LEU LEU VAL ALA VAL ARG SEQRES 7 A 468 GLY GLY GLY HIS SER MET ALA GLY HIS SER VAL CYS ASP SEQRES 8 A 468 GLY GLY ILE VAL ILE ASP LEU SER LEU MET ASN SER ILE SEQRES 9 A 468 LYS VAL SER ARG ARG LEU ARG ARG ALA ARG ALA GLN GLY SEQRES 10 A 468 GLY CYS LEU LEU GLY ALA PHE ASP THR ALA THR GLN ALA SEQRES 11 A 468 HIS MET LEU ALA THR PRO ALA GLY VAL VAL SER HIS THR SEQRES 12 A 468 GLY LEU GLY GLY LEU VAL LEU GLY GLY GLY PHE GLY TRP SEQRES 13 A 468 LEU SER ARG LYS TYR GLY LEU SER ILE ASP ASN LEU THR SEQRES 14 A 468 SER VAL GLU ILE VAL THR ALA ASP GLY GLY VAL LEU THR SEQRES 15 A 468 ALA SER ASP THR GLU ASN PRO ASP LEU PHE TRP ALA VAL SEQRES 16 A 468 ARG GLY GLY GLY GLY ASN PHE GLY VAL VAL THR ALA PHE SEQRES 17 A 468 GLU PHE ASP LEU HIS ARG VAL GLY PRO VAL ARG PHE ALA SEQRES 18 A 468 SER THR TYR TYR SER LEU ASP GLU GLY PRO GLN VAL ILE SEQRES 19 A 468 ARG ALA TRP ARG ASP HIS MET ALA THR ALA PRO ASP GLU SEQRES 20 A 468 LEU THR TRP ALA LEU TYR LEU ARG LEU ALA PRO PRO LEU SEQRES 21 A 468 PRO GLU LEU PRO ALA ASP MET HIS GLY LYS PRO VAL ILE SEQRES 22 A 468 CYS ALA MET SER CYS TRP ILE GLY ASP PRO HIS GLU GLY SEQRES 23 A 468 GLU ARG GLN LEU GLU SER ILE LEU HIS ALA GLY LYS PRO SEQRES 24 A 468 HIS GLY LEU THR LYS ALA THR LEU PRO TYR ARG ALA LEU SEQRES 25 A 468 GLN ALA TYR SER PHE PRO GLY ALA VAL VAL PRO ASP ARG SEQRES 26 A 468 ILE TYR THR LYS SER GLY TYR LEU ASN GLU LEU SER ASP SEQRES 27 A 468 GLU ALA THR ASP THR VAL LEU GLU HIS ALA ALA ASP ILE SEQRES 28 A 468 ALA SER PRO PHE THR GLN LEU GLU LEU LEU TYR LEU GLY SEQRES 29 A 468 GLY ALA VAL ALA ARG VAL PRO ASP ASP ALA THR ALA TYR SEQRES 30 A 468 PRO ASN ARG GLN SER PRO PHE VAL THR ASN LEU ALA ALA SEQRES 31 A 468 ALA TRP MET ASP PRO THR GLU ASP ALA ARG HIS THR ALA SEQRES 32 A 468 TRP ALA ARG GLU GLY TYR ARG ALA LEU ALA GLY HIS LEU SEQRES 33 A 468 SER GLY GLY TYR VAL ASN PHE MET ASN PRO GLY GLU ALA SEQRES 34 A 468 ASP ARG THR ARG GLU ALA TYR GLY ALA ALA LYS PHE GLU SEQRES 35 A 468 ARG LEU GLN GLY VAL LYS ALA LYS TYR ASP PRO THR ASN SEQRES 36 A 468 LEU PHE ARG LEU ASN GLN ASN ILE PRO PRO SER SER PRO SEQRES 1 B 468 GLY SER HIS GLY MET GLN PHE PRO GLN LEU ASP PRO ALA SEQRES 2 B 468 THR LEU ALA ALA PHE SER ALA ALA PHE ARG GLY GLU LEU SEQRES 3 B 468 ILE TRP PRO SER ASP ALA ASP TYR ASP GLU ALA ARG ARG SEQRES 4 B 468 ILE TRP ASN GLY THR ILE ASP ARG ARG PRO ALA LEU ILE SEQRES 5 B 468 ALA ARG CYS THR SER THR PRO ASP VAL VAL ALA ALA VAL SEQRES 6 B 468 SER PHE ALA ARG LYS SER GLY LEU LEU VAL ALA VAL ARG SEQRES 7 B 468 GLY GLY GLY HIS SER MET ALA GLY HIS SER VAL CYS ASP SEQRES 8 B 468 GLY GLY ILE VAL ILE ASP LEU SER LEU MET ASN SER ILE SEQRES 9 B 468 LYS VAL SER ARG ARG LEU ARG ARG ALA ARG ALA GLN GLY SEQRES 10 B 468 GLY CYS LEU LEU GLY ALA PHE ASP THR ALA THR GLN ALA SEQRES 11 B 468 HIS MET LEU ALA THR PRO ALA GLY VAL VAL SER HIS THR SEQRES 12 B 468 GLY LEU GLY GLY LEU VAL LEU GLY GLY GLY PHE GLY TRP SEQRES 13 B 468 LEU SER ARG LYS TYR GLY LEU SER ILE ASP ASN LEU THR SEQRES 14 B 468 SER VAL GLU ILE VAL THR ALA ASP GLY GLY VAL LEU THR SEQRES 15 B 468 ALA SER ASP THR GLU ASN PRO ASP LEU PHE TRP ALA VAL SEQRES 16 B 468 ARG GLY GLY GLY GLY ASN PHE GLY VAL VAL THR ALA PHE SEQRES 17 B 468 GLU PHE ASP LEU HIS ARG VAL GLY PRO VAL ARG PHE ALA SEQRES 18 B 468 SER THR TYR TYR SER LEU ASP GLU GLY PRO GLN VAL ILE SEQRES 19 B 468 ARG ALA TRP ARG ASP HIS MET ALA THR ALA PRO ASP GLU SEQRES 20 B 468 LEU THR TRP ALA LEU TYR LEU ARG LEU ALA PRO PRO LEU SEQRES 21 B 468 PRO GLU LEU PRO ALA ASP MET HIS GLY LYS PRO VAL ILE SEQRES 22 B 468 CYS ALA MET SER CYS TRP ILE GLY ASP PRO HIS GLU GLY SEQRES 23 B 468 GLU ARG GLN LEU GLU SER ILE LEU HIS ALA GLY LYS PRO SEQRES 24 B 468 HIS GLY LEU THR LYS ALA THR LEU PRO TYR ARG ALA LEU SEQRES 25 B 468 GLN ALA TYR SER PHE PRO GLY ALA VAL VAL PRO ASP ARG SEQRES 26 B 468 ILE TYR THR LYS SER GLY TYR LEU ASN GLU LEU SER ASP SEQRES 27 B 468 GLU ALA THR ASP THR VAL LEU GLU HIS ALA ALA ASP ILE SEQRES 28 B 468 ALA SER PRO PHE THR GLN LEU GLU LEU LEU TYR LEU GLY SEQRES 29 B 468 GLY ALA VAL ALA ARG VAL PRO ASP ASP ALA THR ALA TYR SEQRES 30 B 468 PRO ASN ARG GLN SER PRO PHE VAL THR ASN LEU ALA ALA SEQRES 31 B 468 ALA TRP MET ASP PRO THR GLU ASP ALA ARG HIS THR ALA SEQRES 32 B 468 TRP ALA ARG GLU GLY TYR ARG ALA LEU ALA GLY HIS LEU SEQRES 33 B 468 SER GLY GLY TYR VAL ASN PHE MET ASN PRO GLY GLU ALA SEQRES 34 B 468 ASP ARG THR ARG GLU ALA TYR GLY ALA ALA LYS PHE GLU SEQRES 35 B 468 ARG LEU GLN GLY VAL LYS ALA LYS TYR ASP PRO THR ASN SEQRES 36 B 468 LEU PHE ARG LEU ASN GLN ASN ILE PRO PRO SER SER PRO HET FAD A 600 53 HET HTK A 601 18 HET FAD B 600 53 HET HTK B 601 18 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM HTK (7S)-7-HYDROXY-1-PHENYLOCTANE-1,3,5-TRIONE FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 HTK 2(C14 H16 O4) FORMUL 7 HOH *724(H2 O) HELIX 1 1 ASP A 7 PHE A 18 1 12 HELIX 2 2 ASP A 29 ARG A 34 1 6 HELIX 3 3 SER A 53 GLY A 68 1 16 HELIX 4 4 LEU A 116 ALA A 126 1 11 HELIX 5 5 GLY A 140 GLY A 148 1 9 HELIX 6 6 LEU A 153 GLY A 158 1 6 HELIX 7 7 LEU A 159 ASP A 162 5 4 HELIX 8 8 ASN A 184 ARG A 192 1 9 HELIX 9 9 GLY A 194 GLY A 199 5 6 HELIX 10 10 GLU A 225 THR A 239 1 15 HELIX 11 11 PRO A 260 HIS A 264 5 5 HELIX 12 12 ASP A 278 LEU A 290 1 13 HELIX 13 13 HIS A 291 GLY A 293 5 3 HELIX 14 14 PRO A 304 SER A 312 1 9 HELIX 15 15 SER A 333 ASP A 346 1 14 HELIX 16 16 GLY A 360 ALA A 364 5 5 HELIX 17 17 PRO A 367 THR A 371 5 5 HELIX 18 18 ASP A 390 THR A 392 5 3 HELIX 19 19 GLU A 393 ALA A 409 1 17 HELIX 20 20 GLY A 410 LEU A 412 5 3 HELIX 21 21 TYR A 416 MET A 420 5 5 HELIX 22 22 GLU A 424 ASP A 426 5 3 HELIX 23 23 ARG A 427 GLY A 433 1 7 HELIX 24 24 GLY A 433 ASP A 448 1 16 HELIX 25 25 ASP B 7 PHE B 18 1 12 HELIX 26 26 ASP B 29 ARG B 35 1 7 HELIX 27 27 SER B 53 GLY B 68 1 16 HELIX 28 28 LEU B 116 ALA B 126 1 11 HELIX 29 29 GLY B 140 GLY B 148 1 9 HELIX 30 30 LEU B 153 GLY B 158 1 6 HELIX 31 31 LEU B 159 ASP B 162 5 4 HELIX 32 32 ASN B 184 ARG B 192 1 9 HELIX 33 33 GLY B 194 GLY B 199 5 6 HELIX 34 34 GLU B 225 THR B 239 1 15 HELIX 35 35 PRO B 260 HIS B 264 5 5 HELIX 36 36 ASP B 278 HIS B 291 1 14 HELIX 37 37 PRO B 304 SER B 312 1 9 HELIX 38 38 SER B 333 ALA B 345 1 13 HELIX 39 39 GLY B 361 VAL B 366 1 6 HELIX 40 40 PRO B 367 THR B 371 5 5 HELIX 41 41 ASP B 390 THR B 392 5 3 HELIX 42 42 GLU B 393 LEU B 408 1 16 HELIX 43 43 ALA B 409 LEU B 412 5 4 HELIX 44 44 TYR B 416 MET B 420 5 5 HELIX 45 45 GLU B 424 ASP B 426 5 3 HELIX 46 46 ARG B 427 GLY B 433 1 7 HELIX 47 47 GLY B 433 ASP B 448 1 16 SHEET 1 A 4 GLU A 21 ILE A 23 0 SHEET 2 A 4 LEU A 47 ARG A 50 -1 O ARG A 50 N GLU A 21 SHEET 3 A 4 ILE A 90 ASP A 93 1 O VAL A 91 N ALA A 49 SHEET 4 A 4 VAL A 71 ARG A 74 1 N ALA A 72 O ILE A 92 SHEET 1 B 5 ILE A 100 SER A 103 0 SHEET 2 B 5 ARG A 108 GLN A 112 -1 O ARG A 110 N LYS A 101 SHEET 3 B 5 VAL A 200 ASP A 207 -1 O PHE A 204 N ALA A 111 SHEET 4 B 5 LEU A 164 VAL A 170 -1 N VAL A 170 O VAL A 200 SHEET 5 B 5 VAL A 176 SER A 180 -1 O LEU A 177 N ILE A 169 SHEET 1 C 2 LEU A 129 ALA A 130 0 SHEET 2 C 2 HIS A 209 ARG A 210 -1 O HIS A 209 N ALA A 130 SHEET 1 D 7 HIS A 296 LEU A 303 0 SHEET 2 D 7 VAL A 214 SER A 222 -1 N VAL A 214 O LEU A 303 SHEET 3 D 7 PRO A 267 TRP A 275 -1 O SER A 273 N ALA A 217 SHEET 4 D 7 LEU A 244 LEU A 252 -1 N TYR A 249 O CYS A 270 SHEET 5 D 7 GLN A 353 TYR A 358 -1 O LEU A 356 N LEU A 248 SHEET 6 D 7 PHE A 380 TRP A 388 -1 O ASN A 383 N GLU A 355 SHEET 7 D 7 ARG A 321 LEU A 329 -1 N LYS A 325 O LEU A 384 SHEET 1 E 4 GLU B 21 ILE B 23 0 SHEET 2 E 4 LEU B 47 ARG B 50 -1 O ARG B 50 N GLU B 21 SHEET 3 E 4 ILE B 90 ASP B 93 1 O VAL B 91 N ALA B 49 SHEET 4 E 4 VAL B 71 ARG B 74 1 N ALA B 72 O ILE B 92 SHEET 1 F 5 ILE B 100 SER B 103 0 SHEET 2 F 5 ARG B 108 GLN B 112 -1 O ARG B 108 N SER B 103 SHEET 3 F 5 VAL B 200 ASP B 207 -1 O PHE B 204 N ALA B 111 SHEET 4 F 5 LEU B 164 VAL B 170 -1 N THR B 165 O GLU B 205 SHEET 5 F 5 VAL B 176 SER B 180 -1 O LEU B 177 N ILE B 169 SHEET 1 G 2 LEU B 129 ALA B 130 0 SHEET 2 G 2 HIS B 209 ARG B 210 -1 O HIS B 209 N ALA B 130 SHEET 1 H 7 HIS B 296 LEU B 303 0 SHEET 2 H 7 VAL B 214 SER B 222 -1 N PHE B 216 O ALA B 301 SHEET 3 H 7 PRO B 267 TRP B 275 -1 O SER B 273 N ALA B 217 SHEET 4 H 7 LEU B 244 LEU B 252 -1 N ARG B 251 O VAL B 268 SHEET 5 H 7 GLN B 353 TYR B 358 -1 O LEU B 356 N LEU B 248 SHEET 6 H 7 PHE B 380 TRP B 388 -1 O ALA B 385 N GLN B 353 SHEET 7 H 7 ARG B 321 LEU B 329 -1 N LYS B 325 O LEU B 384 CISPEP 1 SER A 312 PHE A 313 0 -12.88 CISPEP 2 SER B 312 PHE B 313 0 -12.67 SITE 1 AC1 35 TRP A 37 VAL A 73 ARG A 74 GLY A 75 SITE 2 AC1 35 GLY A 76 GLY A 77 HIS A 78 SER A 79 SITE 3 AC1 35 MET A 80 SER A 84 LEU A 94 GLY A 113 SITE 4 AC1 35 GLY A 134 VAL A 135 GLY A 140 GLY A 142 SITE 5 AC1 35 GLY A 143 LEU A 144 LEU A 146 GLY A 149 SITE 6 AC1 35 PHE A 150 GLY A 196 GLY A 199 VAL A 201 SITE 7 AC1 35 TYR A 416 ASN A 418 LEU A 455 ASN A 456 SITE 8 AC1 35 HTK A 601 HOH A 769 HOH A 773 HOH A 805 SITE 9 AC1 35 HOH A 807 HOH A 808 HOH A 842 SITE 1 AC2 10 MET A 80 VAL A 135 PHE A 150 GLY A 151 SITE 2 AC2 10 TRP A 152 THR A 245 TYR A 249 GLU A 355 SITE 3 AC2 10 LEU A 357 FAD A 600 SITE 1 AC3 36 TRP B 37 VAL B 73 ARG B 74 GLY B 75 SITE 2 AC3 36 GLY B 76 GLY B 77 HIS B 78 SER B 79 SITE 3 AC3 36 MET B 80 HIS B 83 SER B 84 LEU B 94 SITE 4 AC3 36 GLY B 113 GLY B 134 VAL B 135 GLY B 140 SITE 5 AC3 36 GLY B 142 GLY B 143 LEU B 144 LEU B 146 SITE 6 AC3 36 GLY B 149 PHE B 150 GLY B 196 GLY B 199 SITE 7 AC3 36 VAL B 201 TYR B 416 ASN B 418 LEU B 455 SITE 8 AC3 36 ASN B 456 HTK B 601 HOH B 776 HOH B 788 SITE 9 AC3 36 HOH B 800 HOH B 821 HOH B 828 HOH B 843 SITE 1 AC4 11 MET B 80 VAL B 135 PHE B 150 GLY B 151 SITE 2 AC4 11 TRP B 152 THR B 245 ALA B 247 TYR B 249 SITE 3 AC4 11 GLU B 355 LEU B 357 FAD B 600 CRYST1 71.070 85.120 79.340 90.00 99.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014071 0.000000 0.002375 0.00000 SCALE2 0.000000 0.011748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012782 0.00000