HEADER TRANSFERASE 23-MAR-13 3W91 TITLE CRYSTAL STRUCTURE OF SEMET-LABELED YEAST N-ACETYLTRANSFERASE MPR1 L87M TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MPR1 PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: MPR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE2 KEYWDS ANTIOXIDANT ENZYME, N-ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.NASUNO,Y.HIRANO,T.ITOH,T.HAKOSHIMA,T.HIBI,H.TAKAGI REVDAT 3 30-OCT-24 3W91 1 SEQADV LINK REVDAT 2 07-AUG-13 3W91 1 JRNL REVDAT 1 17-JUL-13 3W91 0 JRNL AUTH R.NASUNO,Y.HIRANO,T.ITOH,T.HAKOSHIMA,T.HIBI,H.TAKAGI JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE YEAST JRNL TITL 2 N-ACETYLTRANSFERASE MPR1 INVOLVED IN OXIDATIVE STRESS JRNL TITL 3 TOLERANCE VIA PROLINE METABOLISM JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 11821 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23818613 JRNL DOI 10.1073/PNAS.1300558110 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2273 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3012 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 158 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5474 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : 0.65000 REMARK 3 B33 (A**2) : -0.97000 REMARK 3 B12 (A**2) : 0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.232 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5673 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7736 ; 1.184 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 681 ; 5.596 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;38.886 ;24.613 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 863 ;13.504 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 831 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4401 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3401 ; 1.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5500 ; 2.554 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2273 ; 4.352 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2238 ; 6.026 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 229 REMARK 3 RESIDUE RANGE : A 301 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): 48.3972 64.4323 82.5416 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.1325 REMARK 3 T33: 0.0975 T12: -0.0215 REMARK 3 T13: 0.0064 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 0.6480 L22: 0.7406 REMARK 3 L33: 2.3577 L12: -0.1026 REMARK 3 L13: -0.3577 L23: 0.3339 REMARK 3 S TENSOR REMARK 3 S11: -0.0639 S12: 0.0008 S13: -0.0753 REMARK 3 S21: -0.0277 S22: 0.0512 S23: -0.0473 REMARK 3 S31: 0.0897 S32: 0.2736 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 228 REMARK 3 RESIDUE RANGE : B 301 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1828 71.0105 72.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.1034 T22: 0.4795 REMARK 3 T33: 0.1971 T12: 0.1211 REMARK 3 T13: -0.0941 T23: -0.0807 REMARK 3 L TENSOR REMARK 3 L11: 0.8010 L22: 0.8152 REMARK 3 L33: 3.2940 L12: -0.2165 REMARK 3 L13: -0.5300 L23: 0.5243 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: 0.2632 S13: 0.0854 REMARK 3 S21: -0.1707 S22: -0.1809 S23: 0.1019 REMARK 3 S31: -0.4599 S32: -0.8972 S33: 0.2011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 228 REMARK 3 RESIDUE RANGE : C 301 C 357 REMARK 3 ORIGIN FOR THE GROUP (A): -0.7688 73.5195 105.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.6101 REMARK 3 T33: 0.2391 T12: 0.0840 REMARK 3 T13: -0.0007 T23: -0.1723 REMARK 3 L TENSOR REMARK 3 L11: 0.9319 L22: 0.5699 REMARK 3 L33: 3.3586 L12: 0.1402 REMARK 3 L13: -0.1071 L23: 0.6124 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.1029 S13: -0.0325 REMARK 3 S21: 0.0119 S22: -0.2770 S23: 0.1108 REMARK 3 S31: -0.2575 S32: -1.1970 S33: 0.2654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3W91 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000096038. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR , SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 42.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.5% PEG3350, 0.1M BISTRIS-HCL (PH REMARK 280 5.5), 0.24M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.14133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.28267 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 128.28267 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.14133 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -41.77900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 72.36335 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 192.42400 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 GLN A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 GLN B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 ALA B 3 REMARK 465 GLU B 4 REMARK 465 GLU B 229 REMARK 465 GLY C -2 REMARK 465 ALA C -1 REMARK 465 GLN C 0 REMARK 465 GLU C 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 GLN B 22 CG CD OE1 NE2 REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 LYS B 220 CG CD CE NZ REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 148 CG CD CE NZ REMARK 470 SER C 206 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS C 144 O HOH C 330 1.84 REMARK 500 CG PRO C 223 O HOH C 357 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MSE A 228 CA - CB - CG ANGL. DEV. = -11.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 74 -31.14 -133.73 REMARK 500 SER A 93 -97.07 -126.96 REMARK 500 ILE A 184 -68.11 -127.41 REMARK 500 SER B 93 -95.05 -127.72 REMARK 500 ASN B 109 46.07 36.91 REMARK 500 ILE C 6 -40.23 -131.69 REMARK 500 SER C 93 -98.89 -124.09 REMARK 500 ILE C 184 -62.55 -122.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3W6S RELATED DB: PDB REMARK 900 RELATED ID: 3W6X RELATED DB: PDB DBREF 3W91 A 1 229 UNP E9P8D2 E9P8D2_YEASX 1 229 DBREF 3W91 B 1 229 UNP E9P8D2 E9P8D2_YEASX 1 229 DBREF 3W91 C 1 229 UNP E9P8D2 E9P8D2_YEASX 1 229 SEQADV 3W91 GLY A -2 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 ALA A -1 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 GLN A 0 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 MSE A 87 UNP E9P8D2 LEU 87 ENGINEERED MUTATION SEQADV 3W91 GLY B -2 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 ALA B -1 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 GLN B 0 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 MSE B 87 UNP E9P8D2 LEU 87 ENGINEERED MUTATION SEQADV 3W91 GLY C -2 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 ALA C -1 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 GLN C 0 UNP E9P8D2 EXPRESSION TAG SEQADV 3W91 MSE C 87 UNP E9P8D2 LEU 87 ENGINEERED MUTATION SEQRES 1 A 232 GLY ALA GLN MSE ASP ALA GLU SER ILE GLU TRP LYS LEU SEQRES 2 A 232 THR ALA ASN LEU ARG ASN GLY PRO THR PHE PHE GLN PRO SEQRES 3 A 232 LEU ALA ASP SER ILE GLU PRO LEU GLN PHE LYS LEU ILE SEQRES 4 A 232 GLY SER ASP THR VAL ALA THR ALA PHE PRO VAL PHE ASP SEQRES 5 A 232 THR LYS TYR ILE PRO ASP SER LEU ILE ASN TYR LEU PHE SEQRES 6 A 232 LYS LEU PHE ASN LEU GLU ILE GLU SER GLY LYS THR TYR SEQRES 7 A 232 PRO GLN LEU HIS SER LEU THR LYS GLN GLY PHE MSE ASN SEQRES 8 A 232 TYR TRP PHE HIS SER PHE ALA VAL VAL VAL LEU GLN THR SEQRES 9 A 232 ASP GLU LYS PHE ILE GLN ASP ASN GLN ASP TRP ASN SER SEQRES 10 A 232 VAL LEU LEU GLY THR PHE TYR ILE LYS PRO ASN TYR ALA SEQRES 11 A 232 PRO ARG CYS SER HIS ASN CYS ASN ALA GLY PHE LEU VAL SEQRES 12 A 232 ASN GLY ALA HIS ARG GLY GLN LYS VAL GLY TYR ARG LEU SEQRES 13 A 232 ALA GLN VAL TYR LEU ASN TRP ALA PRO LEU LEU GLY TYR SEQRES 14 A 232 LYS TYR SER ILE PHE ASN LEU VAL PHE VAL THR ASN GLN SEQRES 15 A 232 ALA SER TRP LYS ILE TRP ASP LYS LEU ASN PHE GLN ARG SEQRES 16 A 232 ILE GLY LEU VAL PRO HIS ALA GLY ILE LEU ASN GLY PHE SEQRES 17 A 232 SER GLU PRO VAL ASP ALA ILE ILE TYR GLY LYS ASP LEU SEQRES 18 A 232 THR LYS ILE GLU PRO GLU PHE LEU SER MSE GLU SEQRES 1 B 232 GLY ALA GLN MSE ASP ALA GLU SER ILE GLU TRP LYS LEU SEQRES 2 B 232 THR ALA ASN LEU ARG ASN GLY PRO THR PHE PHE GLN PRO SEQRES 3 B 232 LEU ALA ASP SER ILE GLU PRO LEU GLN PHE LYS LEU ILE SEQRES 4 B 232 GLY SER ASP THR VAL ALA THR ALA PHE PRO VAL PHE ASP SEQRES 5 B 232 THR LYS TYR ILE PRO ASP SER LEU ILE ASN TYR LEU PHE SEQRES 6 B 232 LYS LEU PHE ASN LEU GLU ILE GLU SER GLY LYS THR TYR SEQRES 7 B 232 PRO GLN LEU HIS SER LEU THR LYS GLN GLY PHE MSE ASN SEQRES 8 B 232 TYR TRP PHE HIS SER PHE ALA VAL VAL VAL LEU GLN THR SEQRES 9 B 232 ASP GLU LYS PHE ILE GLN ASP ASN GLN ASP TRP ASN SER SEQRES 10 B 232 VAL LEU LEU GLY THR PHE TYR ILE LYS PRO ASN TYR ALA SEQRES 11 B 232 PRO ARG CYS SER HIS ASN CYS ASN ALA GLY PHE LEU VAL SEQRES 12 B 232 ASN GLY ALA HIS ARG GLY GLN LYS VAL GLY TYR ARG LEU SEQRES 13 B 232 ALA GLN VAL TYR LEU ASN TRP ALA PRO LEU LEU GLY TYR SEQRES 14 B 232 LYS TYR SER ILE PHE ASN LEU VAL PHE VAL THR ASN GLN SEQRES 15 B 232 ALA SER TRP LYS ILE TRP ASP LYS LEU ASN PHE GLN ARG SEQRES 16 B 232 ILE GLY LEU VAL PRO HIS ALA GLY ILE LEU ASN GLY PHE SEQRES 17 B 232 SER GLU PRO VAL ASP ALA ILE ILE TYR GLY LYS ASP LEU SEQRES 18 B 232 THR LYS ILE GLU PRO GLU PHE LEU SER MSE GLU SEQRES 1 C 232 GLY ALA GLN MSE ASP ALA GLU SER ILE GLU TRP LYS LEU SEQRES 2 C 232 THR ALA ASN LEU ARG ASN GLY PRO THR PHE PHE GLN PRO SEQRES 3 C 232 LEU ALA ASP SER ILE GLU PRO LEU GLN PHE LYS LEU ILE SEQRES 4 C 232 GLY SER ASP THR VAL ALA THR ALA PHE PRO VAL PHE ASP SEQRES 5 C 232 THR LYS TYR ILE PRO ASP SER LEU ILE ASN TYR LEU PHE SEQRES 6 C 232 LYS LEU PHE ASN LEU GLU ILE GLU SER GLY LYS THR TYR SEQRES 7 C 232 PRO GLN LEU HIS SER LEU THR LYS GLN GLY PHE MSE ASN SEQRES 8 C 232 TYR TRP PHE HIS SER PHE ALA VAL VAL VAL LEU GLN THR SEQRES 9 C 232 ASP GLU LYS PHE ILE GLN ASP ASN GLN ASP TRP ASN SER SEQRES 10 C 232 VAL LEU LEU GLY THR PHE TYR ILE LYS PRO ASN TYR ALA SEQRES 11 C 232 PRO ARG CYS SER HIS ASN CYS ASN ALA GLY PHE LEU VAL SEQRES 12 C 232 ASN GLY ALA HIS ARG GLY GLN LYS VAL GLY TYR ARG LEU SEQRES 13 C 232 ALA GLN VAL TYR LEU ASN TRP ALA PRO LEU LEU GLY TYR SEQRES 14 C 232 LYS TYR SER ILE PHE ASN LEU VAL PHE VAL THR ASN GLN SEQRES 15 C 232 ALA SER TRP LYS ILE TRP ASP LYS LEU ASN PHE GLN ARG SEQRES 16 C 232 ILE GLY LEU VAL PRO HIS ALA GLY ILE LEU ASN GLY PHE SEQRES 17 C 232 SER GLU PRO VAL ASP ALA ILE ILE TYR GLY LYS ASP LEU SEQRES 18 C 232 THR LYS ILE GLU PRO GLU PHE LEU SER MSE GLU MODRES 3W91 MSE A 87 MET SELENOMETHIONINE MODRES 3W91 MSE A 228 MET SELENOMETHIONINE MODRES 3W91 MSE B 87 MET SELENOMETHIONINE MODRES 3W91 MSE B 228 MET SELENOMETHIONINE MODRES 3W91 MSE C 1 MET SELENOMETHIONINE MODRES 3W91 MSE C 87 MET SELENOMETHIONINE MODRES 3W91 MSE C 228 MET SELENOMETHIONINE HET MSE A 87 8 HET MSE A 228 8 HET MSE B 87 8 HET MSE B 228 8 HET MSE C 1 8 HET MSE C 87 8 HET MSE C 228 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 4 HOH *198(H2 O) HELIX 1 1 ILE A 6 LEU A 14 5 9 HELIX 2 2 ASP A 49 ILE A 53 5 5 HELIX 3 3 PRO A 54 GLY A 72 1 19 HELIX 4 4 THR A 82 PHE A 91 1 10 HELIX 5 5 ASP A 111 VAL A 115 1 5 HELIX 6 6 ALA A 127 SER A 131 5 5 HELIX 7 7 GLY A 142 ARG A 145 5 4 HELIX 8 8 LYS A 148 ALA A 161 1 14 HELIX 9 9 PRO A 162 GLY A 165 5 4 HELIX 10 10 GLN A 179 ILE A 184 1 6 HELIX 11 11 GLU A 222 SER A 227 1 6 HELIX 12 12 ILE B 6 LEU B 14 5 9 HELIX 13 13 ASP B 49 ILE B 53 5 5 HELIX 14 14 PRO B 54 GLY B 72 1 19 HELIX 15 15 THR B 82 PHE B 91 1 10 HELIX 16 16 ASP B 111 VAL B 115 1 5 HELIX 17 17 ALA B 127 SER B 131 5 5 HELIX 18 18 GLY B 142 ARG B 145 5 4 HELIX 19 19 LYS B 148 ALA B 161 1 14 HELIX 20 20 PRO B 162 GLY B 165 5 4 HELIX 21 21 ASN B 178 LEU B 188 1 11 HELIX 22 22 GLU B 222 SER B 227 1 6 HELIX 23 23 ILE C 6 LEU C 14 5 9 HELIX 24 24 ASP C 49 ILE C 53 5 5 HELIX 25 25 PRO C 54 GLY C 72 1 19 HELIX 26 26 THR C 82 PHE C 91 1 10 HELIX 27 27 ASP C 111 VAL C 115 1 5 HELIX 28 28 ALA C 127 SER C 131 5 5 HELIX 29 29 GLY C 142 ARG C 145 5 4 HELIX 30 30 LYS C 148 ALA C 161 1 14 HELIX 31 31 PRO C 162 GLY C 165 5 4 HELIX 32 32 GLN C 179 ILE C 184 1 6 HELIX 33 33 GLU C 222 SER C 227 1 6 SHEET 1 A 8 LEU A 31 LYS A 34 0 SHEET 2 A 8 VAL A 41 VAL A 47 -1 O ALA A 42 N PHE A 33 SHEET 3 A 8 PHE A 94 LEU A 99 -1 O LEU A 99 N THR A 43 SHEET 4 A 8 LEU A 116 PRO A 124 -1 O GLY A 118 N VAL A 98 SHEET 5 A 8 ASN A 133 VAL A 140 -1 O ASN A 135 N LYS A 123 SHEET 6 A 8 TYR A 168 PHE A 175 1 O ILE A 170 N CYS A 134 SHEET 7 A 8 VAL A 209 ASP A 217 -1 O ILE A 212 N VAL A 174 SHEET 8 A 8 GLN A 191 GLY A 200 -1 N GLY A 200 O VAL A 209 SHEET 1 B 8 LEU B 31 LYS B 34 0 SHEET 2 B 8 VAL B 41 VAL B 47 -1 O ALA B 42 N PHE B 33 SHEET 3 B 8 PHE B 94 LEU B 99 -1 O LEU B 99 N THR B 43 SHEET 4 B 8 LEU B 116 PRO B 124 -1 O LEU B 117 N VAL B 98 SHEET 5 B 8 ASN B 133 VAL B 140 -1 O ASN B 135 N LYS B 123 SHEET 6 B 8 TYR B 168 PHE B 175 1 O ILE B 170 N CYS B 134 SHEET 7 B 8 VAL B 209 ASP B 217 -1 O ILE B 212 N VAL B 174 SHEET 8 B 8 GLN B 191 GLY B 200 -1 N GLN B 191 O GLY B 215 SHEET 1 C 8 LEU C 31 LYS C 34 0 SHEET 2 C 8 VAL C 41 VAL C 47 -1 O ALA C 42 N PHE C 33 SHEET 3 C 8 PHE C 94 LEU C 99 -1 O VAL C 97 N PHE C 45 SHEET 4 C 8 LEU C 116 PRO C 124 -1 O PHE C 120 N VAL C 96 SHEET 5 C 8 ASN C 133 VAL C 140 -1 O ASN C 135 N LYS C 123 SHEET 6 C 8 TYR C 168 PHE C 175 1 O ILE C 170 N CYS C 134 SHEET 7 C 8 VAL C 209 ASP C 217 -1 O ILE C 212 N VAL C 174 SHEET 8 C 8 GLN C 191 GLY C 200 -1 N VAL C 196 O ALA C 211 LINK C PHE A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N ASN A 88 1555 1555 1.33 LINK C SER A 227 N MSE A 228 1555 1555 1.32 LINK C MSE A 228 N GLU A 229 1555 1555 1.32 LINK C PHE B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N ASN B 88 1555 1555 1.34 LINK C SER B 227 N MSE B 228 1555 1555 1.33 LINK C MSE C 1 N ASP C 2 1555 1555 1.33 LINK C PHE C 86 N MSE C 87 1555 1555 1.33 LINK C MSE C 87 N ASN C 88 1555 1555 1.32 LINK C SER C 227 N MSE C 228 1555 1555 1.33 CRYST1 83.558 83.558 192.424 90.00 90.00 120.00 P 31 1 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011968 0.006910 0.000000 0.00000 SCALE2 0.000000 0.013819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005197 0.00000