HEADER TRANSFERASE 03-MAY-13 3WAK TITLE CRYSTAL STRUCTURE OF THE ARCHAEOGLOBUS FULGIDUS TITLE 2 OLIGOSACCHARYLTRANSFERASE (O29867_ARCFU) IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE OLIGOSACCHARYL TRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AFAGLB-L; COMPND 5 EC: 2.4.1.119; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: DSM 4304; SOURCE 5 GENE: AGLB-L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C43(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B(+) KEYWDS OLIGOSACCHARYLTRANSFERASE, N-GLYCOSYLATION, ARCHAEOGLOBUS FULGIDUS, KEYWDS 2 GT-C, PROTEIN B-OLIGOSACCHARYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.MATSUMOTO,A.SHIMADA,D.KOHDA REVDAT 3 08-NOV-23 3WAK 1 REMARK SEQADV REVDAT 2 20-NOV-13 3WAK 1 JRNL REVDAT 1 30-OCT-13 3WAK 0 JRNL AUTH S.MATSUMOTO,A.SHIMADA,J.NYIRENDA,M.IGURA,Y.KAWANO,D.KOHDA JRNL TITL CRYSTAL STRUCTURES OF AN ARCHAEAL OLIGOSACCHARYLTRANSFERASE JRNL TITL 2 PROVIDE INSIGHTS INTO THE CATALYTIC CYCLE OF N-LINKED JRNL TITL 3 PROTEIN GLYCOSYLATION JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 17868 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24127570 JRNL DOI 10.1073/PNAS.1309777110 REMARK 2 REMARK 2 RESOLUTION. 3.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 19556 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9016 - 6.5249 0.97 2789 128 0.1917 0.2398 REMARK 3 2 6.5249 - 5.1807 1.00 2729 132 0.2480 0.3024 REMARK 3 3 5.1807 - 4.5263 1.00 2661 155 0.2107 0.2534 REMARK 3 4 4.5263 - 4.1127 1.00 2638 150 0.2193 0.2863 REMARK 3 5 4.1127 - 3.8180 1.00 2636 142 0.2388 0.2799 REMARK 3 6 3.8180 - 3.5930 0.99 2619 143 0.2632 0.3327 REMARK 3 7 3.5930 - 3.4131 0.96 2485 149 0.2900 0.3435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 134.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7182 REMARK 3 ANGLE : 0.787 9803 REMARK 3 CHIRALITY : 0.055 1058 REMARK 3 PLANARITY : 0.004 1225 REMARK 3 DIHEDRAL : 13.311 2481 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 5:325) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0899 118.0440 18.2679 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.5045 REMARK 3 T33: 0.3507 T12: -0.2871 REMARK 3 T13: -0.0827 T23: 0.1126 REMARK 3 L TENSOR REMARK 3 L11: 0.1521 L22: 0.3951 REMARK 3 L33: 0.6460 L12: -0.0409 REMARK 3 L13: 0.2603 L23: 0.0156 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.3383 S13: -0.1721 REMARK 3 S21: -0.3209 S22: 0.0558 S23: 0.0503 REMARK 3 S31: -0.0970 S32: 0.6452 S33: -0.0053 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 326:492) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3974 113.3564 28.0832 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.3324 REMARK 3 T33: 0.4256 T12: -0.1047 REMARK 3 T13: -0.0665 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.9923 L22: 0.4997 REMARK 3 L33: 0.5424 L12: -0.0428 REMARK 3 L13: 0.2328 L23: -0.1658 REMARK 3 S TENSOR REMARK 3 S11: -0.3143 S12: 0.0088 S13: -0.0367 REMARK 3 S21: -0.1575 S22: 0.0523 S23: 0.1348 REMARK 3 S31: 0.1976 S32: -0.0778 S33: -0.0971 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 493:868) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4237 75.0588 4.3638 REMARK 3 T TENSOR REMARK 3 T11: 0.5277 T22: 0.7579 REMARK 3 T33: 0.7369 T12: 0.0266 REMARK 3 T13: 0.1611 T23: -0.2857 REMARK 3 L TENSOR REMARK 3 L11: 0.4406 L22: 0.3742 REMARK 3 L33: 0.6560 L12: 0.3327 REMARK 3 L13: 0.3702 L23: 0.4320 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: 0.4187 S13: -0.2086 REMARK 3 S21: -0.0093 S22: 0.0466 S23: 0.0104 REMARK 3 S31: 0.0407 S32: 0.0810 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000096093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : IQUID NITROGEN COOLED DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX325HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19650 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3WAJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02M TRIS-HCL, 22% PEG 550MME, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.24800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 61.67850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 61.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.87200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 61.67850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 61.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.62400 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 61.67850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.67850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.87200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 61.67850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.67850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.62400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 91.24800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 869 REMARK 465 LEU A 870 REMARK 465 ALA A 871 REMARK 465 LEU A 872 REMARK 465 VAL A 873 REMARK 465 PRO A 874 REMARK 465 ARG A 875 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 690 OH TYR A 809 2.15 REMARK 500 O TYR A 674 OG1 THR A 677 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 9 124.84 176.75 REMARK 500 LYS A 10 47.61 -94.08 REMARK 500 THR A 38 -129.85 -106.19 REMARK 500 PRO A 63 40.58 -98.07 REMARK 500 TRP A 67 13.03 -144.17 REMARK 500 PRO A 75 50.69 -107.32 REMARK 500 PHE A 132 -122.38 -124.94 REMARK 500 PRO A 148 -152.62 -83.90 REMARK 500 SER A 190 56.10 -106.27 REMARK 500 ALA A 195 -71.96 57.27 REMARK 500 PRO A 269 87.91 -66.20 REMARK 500 LYS A 314 32.74 -96.72 REMARK 500 ILE A 327 -73.89 52.59 REMARK 500 VAL A 333 -77.12 -77.45 REMARK 500 ASP A 337 -99.72 34.36 REMARK 500 ARG A 347 81.37 -64.16 REMARK 500 VAL A 348 98.83 -62.48 REMARK 500 ALA A 355 -7.78 67.00 REMARK 500 THR A 357 117.53 -25.62 REMARK 500 ILE A 358 175.53 61.48 REMARK 500 ALA A 359 -31.89 -157.51 REMARK 500 PHE A 366 50.91 -145.54 REMARK 500 THR A 367 -117.67 41.08 REMARK 500 HIS A 368 -29.18 -144.41 REMARK 500 ASN A 369 81.05 -172.07 REMARK 500 ARG A 403 71.27 35.39 REMARK 500 PHE A 427 41.57 -109.51 REMARK 500 HIS A 451 -87.65 71.14 REMARK 500 LEU A 452 -62.57 43.93 REMARK 500 ALA A 455 -84.32 -61.49 REMARK 500 LEU A 456 -67.23 18.40 REMARK 500 ALA A 462 -160.22 -117.34 REMARK 500 ASN A 513 9.27 -158.99 REMARK 500 PRO A 515 158.16 -49.93 REMARK 500 PRO A 569 6.46 -64.87 REMARK 500 ASN A 579 -0.07 -151.74 REMARK 500 THR A 616 -100.28 -116.88 REMARK 500 ASN A 661 -4.84 64.11 REMARK 500 PRO A 666 69.37 -66.53 REMARK 500 LEU A 667 118.28 -160.12 REMARK 500 PRO A 702 89.45 -60.44 REMARK 500 ALA A 703 -94.79 51.24 REMARK 500 GLN A 711 13.99 -162.77 REMARK 500 ASN A 716 95.67 -67.45 REMARK 500 LEU A 754 -91.72 -126.46 REMARK 500 LYS A 757 -158.88 -71.74 REMARK 500 MET A 759 57.94 -163.53 REMARK 500 ILE A 761 72.86 23.56 REMARK 500 SER A 768 -149.23 -117.17 REMARK 500 SER A 787 76.76 -102.56 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 161 OD2 103.5 REMARK 620 3 HIS A 163 NE2 166.9 86.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WAI RELATED DB: PDB REMARK 900 RELATED ID: 3WAJ RELATED DB: PDB DBREF 3WAK A 1 868 UNP O29867 O29867_ARCFU 1 868 SEQADV 3WAK GLU A 869 UNP O29867 EXPRESSION TAG SEQADV 3WAK LEU A 870 UNP O29867 EXPRESSION TAG SEQADV 3WAK ALA A 871 UNP O29867 EXPRESSION TAG SEQADV 3WAK LEU A 872 UNP O29867 EXPRESSION TAG SEQADV 3WAK VAL A 873 UNP O29867 EXPRESSION TAG SEQADV 3WAK PRO A 874 UNP O29867 EXPRESSION TAG SEQADV 3WAK ARG A 875 UNP O29867 EXPRESSION TAG SEQRES 1 A 875 MET GLN ASN ALA GLU SER TRP PHE LYS LYS TYR TRP HIS SEQRES 2 A 875 LEU SER VAL LEU VAL ILE ALA ALA LEU ILE SER VAL LYS SEQRES 3 A 875 LEU ARG ILE LEU ASN PRO TRP ASN SER VAL PHE THR TRP SEQRES 4 A 875 THR VAL ARG LEU GLY GLY ASN ASP PRO TRP TYR TYR TYR SEQRES 5 A 875 ARG LEU ILE GLU ASN THR ILE HIS ASN PHE PRO HIS ARG SEQRES 6 A 875 ILE TRP PHE ASP PRO PHE THR TYR TYR PRO TYR GLY SER SEQRES 7 A 875 TYR THR HIS PHE GLY PRO PHE LEU VAL TYR LEU GLY SER SEQRES 8 A 875 ILE ALA GLY ILE ILE PHE SER ALA THR SER GLY GLU SER SEQRES 9 A 875 LEU ARG ALA VAL LEU ALA PHE ILE PRO ALA ILE GLY GLY SEQRES 10 A 875 VAL LEU ALA ILE LEU PRO VAL TYR LEU LEU THR ARG GLU SEQRES 11 A 875 VAL PHE ASP LYS ARG ALA ALA VAL ILE ALA ALA PHE LEU SEQRES 12 A 875 ILE ALA ILE VAL PRO GLY GLN PHE LEU GLN ARG SER ILE SEQRES 13 A 875 LEU GLY PHE ASN ASP HIS HIS ILE TRP GLU ALA PHE TRP SEQRES 14 A 875 GLN VAL SER ALA LEU GLY THR PHE LEU LEU ALA TYR ASN SEQRES 15 A 875 ARG TRP LYS GLY HIS ASP LEU SER HIS ASN LEU THR ALA SEQRES 16 A 875 ARG GLN MET ALA TYR PRO VAL ILE ALA GLY ILE THR ILE SEQRES 17 A 875 GLY LEU TYR VAL LEU SER TRP GLY ALA GLY PHE ILE ILE SEQRES 18 A 875 ALA PRO ILE ILE LEU ALA PHE MET PHE PHE ALA PHE VAL SEQRES 19 A 875 LEU ALA GLY PHE VAL ASN ALA ASP ARG LYS ASN LEU SER SEQRES 20 A 875 LEU VAL ALA VAL VAL THR PHE ALA VAL SER ALA LEU ILE SEQRES 21 A 875 TYR LEU PRO PHE ALA PHE ASN TYR PRO GLY PHE SER THR SEQRES 22 A 875 ILE PHE TYR SER PRO PHE GLN LEU LEU VAL LEU LEU GLY SEQRES 23 A 875 SER ALA VAL ILE ALA ALA ALA PHE TYR GLN ILE GLU LYS SEQRES 24 A 875 TRP ASN ASP VAL GLY PHE PHE GLU ARG VAL GLY LEU GLY SEQRES 25 A 875 ARG LYS GLY MET PRO LEU ALA VAL ILE VAL LEU THR ALA SEQRES 26 A 875 LEU ILE MET GLY LEU PHE PHE VAL ILE SER PRO ASP PHE SEQRES 27 A 875 ALA ARG ASN LEU LEU SER VAL VAL ARG VAL VAL GLN PRO SEQRES 28 A 875 LYS GLY GLY ALA LEU THR ILE ALA GLU VAL TYR PRO PHE SEQRES 29 A 875 PHE PHE THR HIS ASN GLY GLU PHE THR LEU THR ASN ALA SEQRES 30 A 875 VAL LEU HIS PHE GLY ALA LEU PHE PHE PHE GLY MET ALA SEQRES 31 A 875 GLY ILE LEU TYR SER ALA TYR ARG PHE LEU LYS ARG ARG SEQRES 32 A 875 SER PHE PRO GLU MET ALA LEU LEU ILE TRP ALA ILE ALA SEQRES 33 A 875 MET PHE ILE ALA LEU TRP GLY GLN ASN ARG PHE ALA TYR SEQRES 34 A 875 TYR PHE ALA ALA VAL SER ALA VAL TYR SER ALA LEU ALA SEQRES 35 A 875 LEU SER VAL VAL PHE ASP LYS LEU HIS LEU TYR ARG ALA SEQRES 36 A 875 LEU GLU ASN ALA ILE GLY ALA ARG ASN LYS LEU SER TYR SEQRES 37 A 875 PHE ARG VAL ALA PHE ALA LEU LEU ILE ALA LEU ALA ALA SEQRES 38 A 875 ILE TYR PRO THR TYR ILE LEU ALA ASP ALA GLN SER SER SEQRES 39 A 875 TYR ALA GLY GLY PRO ASN LYS GLN TRP TYR ASP ALA LEU SEQRES 40 A 875 THR TRP MET ARG GLU ASN THR PRO ASP GLY GLU LYS TYR SEQRES 41 A 875 ASP GLU TYR TYR LEU GLN LEU TYR PRO THR PRO GLN SER SEQRES 42 A 875 ASN LYS GLU PRO PHE SER TYR PRO PHE GLU THR TYR GLY SEQRES 43 A 875 VAL ILE SER TRP TRP ASP TYR GLY HIS TRP ILE GLU ALA SEQRES 44 A 875 VAL ALA HIS ARG MET PRO ILE ALA ASN PRO PHE GLN ALA SEQRES 45 A 875 GLY ILE GLY ASN LYS TYR ASN ASN VAL PRO GLY ALA SER SEQRES 46 A 875 SER PHE PHE THR ALA GLU ASN GLU SER TYR ALA GLU PHE SEQRES 47 A 875 VAL ALA GLU LYS LEU ASN VAL LYS TYR VAL VAL SER ASP SEQRES 48 A 875 ILE GLU MET GLU THR GLY LYS TYR TYR ALA MET ALA VAL SEQRES 49 A 875 TRP ALA GLU GLY ASP LEU PRO LEU ALA GLU LYS TYR TYR SEQRES 50 A 875 GLY GLY TYR PHE TYR TYR SER PRO THR GLY THR PHE GLY SEQRES 51 A 875 TYR ALA ASN SER GLN TRP ASP ILE PRO LEU ASN SER ILE SEQRES 52 A 875 ILE ILE PRO LEU ARG ILE PRO SER GLU LEU TYR TYR SER SEQRES 53 A 875 THR MET GLU ALA LYS LEU HIS LEU PHE ASP GLY SER GLY SEQRES 54 A 875 LEU SER HIS TYR ARG MET ILE TYR GLU SER ASP TYR PRO SEQRES 55 A 875 ALA GLU TRP LYS SER TYR SER SER GLN VAL ASN LEU ASN SEQRES 56 A 875 ASN GLU SER GLN VAL LEU GLN THR ALA LEU TYR GLU ALA SEQRES 57 A 875 VAL MET ARG ALA ARG TYR GLY VAL SER PRO THR MET GLY SEQRES 58 A 875 THR GLN GLU VAL LEU TYR LYS TYR ALA TYR THR GLN LEU SEQRES 59 A 875 TYR GLU LYS LYS MET GLY ILE PRO VAL LYS ILE ALA PRO SEQRES 60 A 875 SER GLY TYR VAL LYS ILE PHE GLU ARG VAL LYS GLY ALA SEQRES 61 A 875 VAL VAL THR GLY LYS VAL SER ALA ASN VAL THR GLU VAL SEQRES 62 A 875 SER VAL ASN ALA THR ILE LYS THR ASN GLN ASN ARG THR SEQRES 63 A 875 PHE GLU TYR TRP GLN THR VAL GLU VAL LYS ASN GLY THR SEQRES 64 A 875 TYR THR VAL VAL LEU PRO TYR SER HIS ASN SER ASP TYR SEQRES 65 A 875 PRO VAL LYS PRO ILE THR PRO TYR HIS ILE LYS ALA GLY SEQRES 66 A 875 ASN VAL VAL LYS GLU ILE THR ILE TYR GLU SER GLN VAL SEQRES 67 A 875 GLN ASN GLY GLU ILE ILE GLN LEU ASP LEU GLU LEU ALA SEQRES 68 A 875 LEU VAL PRO ARG HET MN A1200 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN MN 2+ HELIX 1 1 TYR A 11 ILE A 29 1 19 HELIX 2 2 PRO A 32 PHE A 37 1 6 HELIX 3 3 ASN A 46 ASN A 61 1 16 HELIX 4 4 GLY A 83 PHE A 97 1 15 HELIX 5 5 SER A 101 ALA A 110 1 10 HELIX 6 6 ALA A 110 ALA A 120 1 11 HELIX 7 7 ALA A 120 PHE A 132 1 13 HELIX 8 8 ASP A 133 ILE A 144 1 12 HELIX 9 9 GLY A 149 ARG A 154 1 6 HELIX 10 10 HIS A 162 LYS A 185 1 24 HELIX 11 11 THR A 194 GLN A 197 5 4 HELIX 12 12 MET A 198 LEU A 213 1 16 HELIX 13 13 TRP A 215 PHE A 219 5 5 HELIX 14 14 ILE A 220 LEU A 235 1 16 HELIX 15 15 ASP A 242 LEU A 262 1 21 HELIX 16 16 PRO A 263 ALA A 265 5 3 HELIX 17 17 SER A 277 VAL A 303 1 27 HELIX 18 18 GLY A 304 VAL A 309 1 6 HELIX 19 19 LEU A 311 ARG A 313 5 3 HELIX 20 20 LYS A 314 LEU A 326 1 13 HELIX 21 21 GLY A 329 VAL A 333 5 5 HELIX 22 22 ASP A 337 ARG A 347 1 11 HELIX 23 23 LEU A 374 GLY A 382 1 9 HELIX 24 24 ALA A 383 ARG A 402 1 20 HELIX 25 25 SER A 404 GLN A 424 1 21 HELIX 26 26 ASN A 425 TYR A 430 5 6 HELIX 27 27 PHE A 431 LEU A 450 1 20 HELIX 28 28 ALA A 455 ILE A 460 1 6 HELIX 29 29 SER A 467 SER A 493 1 27 HELIX 30 30 ASN A 500 GLU A 512 1 13 HELIX 31 31 ASP A 516 TYR A 524 1 9 HELIX 32 32 TRP A 550 ASP A 552 5 3 HELIX 33 33 TYR A 553 HIS A 562 1 10 HELIX 34 34 ALA A 584 THR A 589 1 6 HELIX 35 35 GLU A 593 LEU A 603 1 11 HELIX 36 36 ILE A 612 THR A 616 1 5 HELIX 37 37 LYS A 618 GLY A 628 1 11 HELIX 38 38 ASP A 629 GLU A 634 1 6 HELIX 39 39 SER A 671 SER A 676 1 6 HELIX 40 40 THR A 677 LEU A 684 1 8 HELIX 41 41 ALA A 703 SER A 709 1 7 HELIX 42 42 ASN A 716 ARG A 731 1 16 HELIX 43 43 THR A 739 LEU A 754 1 16 HELIX 44 44 TYR A 854 GLN A 859 1 6 SHEET 1 A 2 PHE A 68 ASP A 69 0 SHEET 2 A 2 SER A 78 TYR A 79 -1 O SER A 78 N ASP A 69 SHEET 1 B 4 GLY A 546 ILE A 548 0 SHEET 2 B 4 VAL A 605 ASP A 611 1 O LYS A 606 N GLY A 546 SHEET 3 B 4 VAL A 771 ARG A 776 -1 O ARG A 776 N LYS A 606 SHEET 4 B 4 TYR A 693 GLU A 698 -1 N ILE A 696 O ILE A 773 SHEET 1 C 3 PHE A 649 ALA A 652 0 SHEET 2 C 3 TYR A 637 TYR A 643 -1 N TYR A 642 O GLY A 650 SHEET 3 C 3 ILE A 663 PRO A 670 -1 O ILE A 669 N GLY A 638 SHEET 1 D 3 THR A 819 LEU A 824 0 SHEET 2 D 3 ALA A 780 LYS A 785 -1 N VAL A 782 O VAL A 822 SHEET 3 D 3 ILE A 864 GLN A 865 1 O ILE A 864 N VAL A 781 SHEET 1 E 3 THR A 806 GLU A 814 0 SHEET 2 E 3 GLU A 792 LYS A 800 -1 N ALA A 797 O TYR A 809 SHEET 3 E 3 LYS A 835 PRO A 836 -1 O LYS A 835 N LYS A 800 LINK OD2 ASP A 47 MN MN A1200 1555 1555 1.86 LINK OD2 ASP A 161 MN MN A1200 1555 1555 1.87 LINK NE2 HIS A 163 MN MN A1200 1555 1555 1.98 CISPEP 1 GLU A 5 SER A 6 0 1.67 CISPEP 2 TRP A 7 PHE A 8 0 10.34 CISPEP 3 LYS A 9 LYS A 10 0 2.84 CISPEP 4 PHE A 62 PRO A 63 0 0.35 CISPEP 5 TYR A 74 PRO A 75 0 -2.60 CISPEP 6 LEU A 189 SER A 190 0 2.25 CISPEP 7 ASN A 192 LEU A 193 0 -1.66 CISPEP 8 ILE A 334 SER A 335 0 2.28 CISPEP 9 PRO A 336 ASP A 337 0 -8.00 CISPEP 10 GLN A 350 PRO A 351 0 3.82 CISPEP 11 LYS A 352 GLY A 353 0 3.18 CISPEP 12 GLY A 353 GLY A 354 0 1.85 CISPEP 13 GLY A 354 ALA A 355 0 5.00 CISPEP 14 LEU A 356 THR A 357 0 10.81 CISPEP 15 THR A 357 ILE A 358 0 -3.78 CISPEP 16 ASN A 369 GLY A 370 0 -1.65 CISPEP 17 ARG A 454 ALA A 455 0 15.89 CISPEP 18 ILE A 460 GLY A 461 0 -1.49 CISPEP 19 ALA A 788 ASN A 789 0 0.59 SITE 1 AC1 3 ASP A 47 ASP A 161 HIS A 163 CRYST1 123.357 123.357 182.496 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008107 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005480 0.00000