data_3WBQ # _entry.id 3WBQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WBQ pdb_00003wbq 10.2210/pdb3wbq/pdb RCSB RCSB096134 ? ? WWPDB D_1000096134 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-25 2 'Structure model' 1 1 2014-04-09 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2022-08-24 5 'Structure model' 1 4 2023-11-08 6 'Structure model' 1 5 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation 3 4 'Structure model' database_2 4 4 'Structure model' struct_ref_seq_dif 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond 7 5 'Structure model' pdbx_initial_refinement_model 8 6 'Structure model' pdbx_entry_details 9 6 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_citation.journal_volume' 3 4 'Structure model' '_citation.page_first' 4 4 'Structure model' '_citation.page_last' 5 4 'Structure model' '_citation.title' 6 4 'Structure model' '_citation.year' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' 9 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WBQ _pdbx_database_status.recvd_initial_deposition_date 2013-05-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3WBP . unspecified PDB 3WBR . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagae, M.' 1 'Ikeda, A.' 2 'Kitago, Y.' 3 'Matsumoto, N.' 4 'Yamamoto, K.' 5 'Yamaguchi, Y.' 6 # _citation.id primary _citation.title ;Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer. ; _citation.journal_abbrev Proteins _citation.journal_volume 82 _citation.page_first 1512 _citation.page_last 1518 _citation.year 2014 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 1097-0134 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24425442 _citation.pdbx_database_id_DOI 10.1002/prot.24504 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagae, M.' 1 ? primary 'Ikeda, A.' 2 ? primary 'Kitago, Y.' 3 ? primary 'Matsumoto, N.' 4 ? primary 'Yamamoto, K.' 5 ? primary 'Yamaguchi, Y.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C-type lectin domain family 4 member C' 15127.871 2 ? ? 'UNP residues 83-210' ? 2 water nat water 18.015 4 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Blood dendritic cell antigen 2, BDCA-2, C-type lectin superfamily member 7, Dendritic lectin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTP YNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK ; _entity_poly.pdbx_seq_one_letter_code_can ;GSCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTP YNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 CYS n 1 4 PRO n 1 5 THR n 1 6 PRO n 1 7 TRP n 1 8 THR n 1 9 SER n 1 10 PHE n 1 11 GLN n 1 12 SER n 1 13 SER n 1 14 CYS n 1 15 TYR n 1 16 PHE n 1 17 ILE n 1 18 SER n 1 19 THR n 1 20 GLY n 1 21 MET n 1 22 GLN n 1 23 SER n 1 24 TRP n 1 25 THR n 1 26 LYS n 1 27 SER n 1 28 GLN n 1 29 LYS n 1 30 ASN n 1 31 CYS n 1 32 SER n 1 33 VAL n 1 34 MET n 1 35 GLY n 1 36 ALA n 1 37 ASP n 1 38 LEU n 1 39 VAL n 1 40 VAL n 1 41 ILE n 1 42 ASN n 1 43 THR n 1 44 ARG n 1 45 GLU n 1 46 GLU n 1 47 GLN n 1 48 ASP n 1 49 PHE n 1 50 ILE n 1 51 ILE n 1 52 GLN n 1 53 ASN n 1 54 LEU n 1 55 LYS n 1 56 ARG n 1 57 ASN n 1 58 SER n 1 59 SER n 1 60 TYR n 1 61 PHE n 1 62 LEU n 1 63 GLY n 1 64 LEU n 1 65 SER n 1 66 ASP n 1 67 PRO n 1 68 GLY n 1 69 GLY n 1 70 ARG n 1 71 ARG n 1 72 HIS n 1 73 TRP n 1 74 GLN n 1 75 TRP n 1 76 VAL n 1 77 ASP n 1 78 GLN n 1 79 THR n 1 80 PRO n 1 81 TYR n 1 82 ASN n 1 83 GLU n 1 84 ASN n 1 85 VAL n 1 86 THR n 1 87 PHE n 1 88 TRP n 1 89 HIS n 1 90 SER n 1 91 GLY n 1 92 GLU n 1 93 PRO n 1 94 ASN n 1 95 ASN n 1 96 LEU n 1 97 ASP n 1 98 GLU n 1 99 ARG n 1 100 CYS n 1 101 ALA n 1 102 ILE n 1 103 ILE n 1 104 ASN n 1 105 PHE n 1 106 ARG n 1 107 SER n 1 108 SER n 1 109 GLU n 1 110 GLU n 1 111 TRP n 1 112 GLY n 1 113 TRP n 1 114 ASN n 1 115 ASP n 1 116 ILE n 1 117 HIS n 1 118 CYS n 1 119 HIS n 1 120 VAL n 1 121 PRO n 1 122 GLN n 1 123 LYS n 1 124 SER n 1 125 ILE n 1 126 CYS n 1 127 LYS n 1 128 MET n 1 129 LYS n 1 130 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BDCA2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pCold-TEV vector' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 81 ? ? ? A . n A 1 2 SER 2 82 82 SER SER A . n A 1 3 CYS 3 83 83 CYS CYS A . n A 1 4 PRO 4 84 84 PRO PRO A . n A 1 5 THR 5 85 85 THR THR A . n A 1 6 PRO 6 86 86 PRO PRO A . n A 1 7 TRP 7 87 87 TRP TRP A . n A 1 8 THR 8 88 88 THR THR A . n A 1 9 SER 9 89 89 SER SER A . n A 1 10 PHE 10 90 90 PHE PHE A . n A 1 11 GLN 11 91 91 GLN GLN A . n A 1 12 SER 12 92 92 SER SER A . n A 1 13 SER 13 93 93 SER SER A . n A 1 14 CYS 14 94 94 CYS CYS A . n A 1 15 TYR 15 95 95 TYR TYR A . n A 1 16 PHE 16 96 96 PHE PHE A . n A 1 17 ILE 17 97 97 ILE ILE A . n A 1 18 SER 18 98 98 SER SER A . n A 1 19 THR 19 99 99 THR THR A . n A 1 20 GLY 20 100 100 GLY GLY A . n A 1 21 MET 21 101 101 MET MET A . n A 1 22 GLN 22 102 102 GLN GLN A . n A 1 23 SER 23 103 103 SER SER A . n A 1 24 TRP 24 104 104 TRP TRP A . n A 1 25 THR 25 105 105 THR THR A . n A 1 26 LYS 26 106 106 LYS LYS A . n A 1 27 SER 27 107 107 SER SER A . n A 1 28 GLN 28 108 108 GLN GLN A . n A 1 29 LYS 29 109 109 LYS LYS A . n A 1 30 ASN 30 110 110 ASN ASN A . n A 1 31 CYS 31 111 111 CYS CYS A . n A 1 32 SER 32 112 112 SER SER A . n A 1 33 VAL 33 113 113 VAL VAL A . n A 1 34 MET 34 114 114 MET MET A . n A 1 35 GLY 35 115 115 GLY GLY A . n A 1 36 ALA 36 116 116 ALA ALA A . n A 1 37 ASP 37 117 117 ASP ASP A . n A 1 38 LEU 38 118 118 LEU LEU A . n A 1 39 VAL 39 119 119 VAL VAL A . n A 1 40 VAL 40 120 120 VAL VAL A . n A 1 41 ILE 41 121 121 ILE ILE A . n A 1 42 ASN 42 122 122 ASN ASN A . n A 1 43 THR 43 123 123 THR THR A . n A 1 44 ARG 44 124 124 ARG ARG A . n A 1 45 GLU 45 125 125 GLU GLU A . n A 1 46 GLU 46 126 126 GLU GLU A . n A 1 47 GLN 47 127 127 GLN GLN A . n A 1 48 ASP 48 128 128 ASP ASP A . n A 1 49 PHE 49 129 129 PHE PHE A . n A 1 50 ILE 50 130 130 ILE ILE A . n A 1 51 ILE 51 131 131 ILE ILE A . n A 1 52 GLN 52 132 132 GLN GLN A . n A 1 53 ASN 53 133 133 ASN ASN A . n A 1 54 LEU 54 134 134 LEU LEU A . n A 1 55 LYS 55 135 135 LYS LYS A . n A 1 56 ARG 56 136 136 ARG ARG A . n A 1 57 ASN 57 137 137 ASN ASN A . n A 1 58 SER 58 138 138 SER SER A . n A 1 59 SER 59 139 139 SER SER A . n A 1 60 TYR 60 140 140 TYR TYR A . n A 1 61 PHE 61 141 141 PHE PHE A . n A 1 62 LEU 62 142 142 LEU LEU A . n A 1 63 GLY 63 143 143 GLY GLY A . n A 1 64 LEU 64 144 144 LEU LEU A . n A 1 65 SER 65 145 145 SER SER A . n A 1 66 ASP 66 146 146 ASP ASP A . n A 1 67 PRO 67 147 147 PRO PRO A . n A 1 68 GLY 68 148 148 GLY GLY A . n A 1 69 GLY 69 149 149 GLY GLY A . n A 1 70 ARG 70 150 150 ARG ARG A . n A 1 71 ARG 71 151 151 ARG ARG A . n A 1 72 HIS 72 152 152 HIS HIS A . n A 1 73 TRP 73 153 153 TRP TRP A . n A 1 74 GLN 74 154 154 GLN GLN A . n A 1 75 TRP 75 155 155 TRP TRP A . n A 1 76 VAL 76 156 156 VAL VAL A . n A 1 77 ASP 77 157 157 ASP ASP A . n A 1 78 GLN 78 158 158 GLN GLN A . n A 1 79 THR 79 159 159 THR THR A . n A 1 80 PRO 80 160 160 PRO PRO A . n A 1 81 TYR 81 161 161 TYR TYR A . n A 1 82 ASN 82 162 162 ASN ASN A . n A 1 83 GLU 83 163 163 GLU GLU A . n A 1 84 ASN 84 164 164 ASN ASN A . n A 1 85 VAL 85 165 165 VAL VAL A . n A 1 86 THR 86 166 166 THR THR A . n A 1 87 PHE 87 167 167 PHE PHE A . n A 1 88 TRP 88 168 168 TRP TRP A . n A 1 89 HIS 89 169 169 HIS HIS A . n A 1 90 SER 90 170 170 SER SER A . n A 1 91 GLY 91 171 171 GLY GLY A . n A 1 92 GLU 92 172 172 GLU GLU A . n A 1 93 PRO 93 173 173 PRO PRO A . n A 1 94 ASN 94 174 174 ASN ASN A . n A 1 95 ASN 95 175 175 ASN ASN A . n A 1 96 LEU 96 176 176 LEU LEU A . n A 1 97 ASP 97 177 177 ASP ASP A . n A 1 98 GLU 98 178 178 GLU GLU A . n A 1 99 ARG 99 179 179 ARG ARG A . n A 1 100 CYS 100 180 180 CYS CYS A . n A 1 101 ALA 101 181 181 ALA ALA A . n A 1 102 ILE 102 182 182 ILE ILE A . n A 1 103 ILE 103 183 183 ILE ILE A . n A 1 104 ASN 104 184 184 ASN ASN A . n A 1 105 PHE 105 185 185 PHE PHE A . n A 1 106 ARG 106 186 186 ARG ARG A . n A 1 107 SER 107 187 187 SER SER A . n A 1 108 SER 108 188 ? ? ? A . n A 1 109 GLU 109 189 ? ? ? A . n A 1 110 GLU 110 190 190 GLU GLU A . n A 1 111 TRP 111 191 191 TRP TRP A . n A 1 112 GLY 112 192 192 GLY GLY A . n A 1 113 TRP 113 193 193 TRP TRP A . n A 1 114 ASN 114 194 194 ASN ASN A . n A 1 115 ASP 115 195 195 ASP ASP A . n A 1 116 ILE 116 196 196 ILE ILE A . n A 1 117 HIS 117 197 197 HIS HIS A . n A 1 118 CYS 118 198 198 CYS CYS A . n A 1 119 HIS 119 199 199 HIS HIS A . n A 1 120 VAL 120 200 200 VAL VAL A . n A 1 121 PRO 121 201 201 PRO PRO A . n A 1 122 GLN 122 202 202 GLN GLN A . n A 1 123 LYS 123 203 203 LYS LYS A . n A 1 124 SER 124 204 204 SER SER A . n A 1 125 ILE 125 205 205 ILE ILE A . n A 1 126 CYS 126 206 206 CYS CYS A . n A 1 127 LYS 127 207 207 LYS LYS A . n A 1 128 MET 128 208 208 MET MET A . n A 1 129 LYS 129 209 209 LYS LYS A . n A 1 130 LYS 130 210 ? ? ? A . n B 1 1 GLY 1 81 ? ? ? B . n B 1 2 SER 2 82 ? ? ? B . n B 1 3 CYS 3 83 83 CYS CYS B . n B 1 4 PRO 4 84 84 PRO PRO B . n B 1 5 THR 5 85 85 THR THR B . n B 1 6 PRO 6 86 86 PRO PRO B . n B 1 7 TRP 7 87 87 TRP TRP B . n B 1 8 THR 8 88 88 THR THR B . n B 1 9 SER 9 89 89 SER SER B . n B 1 10 PHE 10 90 90 PHE PHE B . n B 1 11 GLN 11 91 91 GLN GLN B . n B 1 12 SER 12 92 92 SER SER B . n B 1 13 SER 13 93 93 SER SER B . n B 1 14 CYS 14 94 94 CYS CYS B . n B 1 15 TYR 15 95 95 TYR TYR B . n B 1 16 PHE 16 96 96 PHE PHE B . n B 1 17 ILE 17 97 97 ILE ILE B . n B 1 18 SER 18 98 98 SER SER B . n B 1 19 THR 19 99 99 THR THR B . n B 1 20 GLY 20 100 100 GLY GLY B . n B 1 21 MET 21 101 101 MET MET B . n B 1 22 GLN 22 102 102 GLN GLN B . n B 1 23 SER 23 103 103 SER SER B . n B 1 24 TRP 24 104 104 TRP TRP B . n B 1 25 THR 25 105 105 THR THR B . n B 1 26 LYS 26 106 106 LYS LYS B . n B 1 27 SER 27 107 107 SER SER B . n B 1 28 GLN 28 108 108 GLN GLN B . n B 1 29 LYS 29 109 109 LYS LYS B . n B 1 30 ASN 30 110 110 ASN ASN B . n B 1 31 CYS 31 111 111 CYS CYS B . n B 1 32 SER 32 112 112 SER SER B . n B 1 33 VAL 33 113 113 VAL VAL B . n B 1 34 MET 34 114 114 MET MET B . n B 1 35 GLY 35 115 115 GLY GLY B . n B 1 36 ALA 36 116 116 ALA ALA B . n B 1 37 ASP 37 117 117 ASP ASP B . n B 1 38 LEU 38 118 118 LEU LEU B . n B 1 39 VAL 39 119 119 VAL VAL B . n B 1 40 VAL 40 120 120 VAL VAL B . n B 1 41 ILE 41 121 121 ILE ILE B . n B 1 42 ASN 42 122 122 ASN ASN B . n B 1 43 THR 43 123 123 THR THR B . n B 1 44 ARG 44 124 124 ARG ARG B . n B 1 45 GLU 45 125 125 GLU GLU B . n B 1 46 GLU 46 126 126 GLU GLU B . n B 1 47 GLN 47 127 127 GLN GLN B . n B 1 48 ASP 48 128 128 ASP ASP B . n B 1 49 PHE 49 129 129 PHE PHE B . n B 1 50 ILE 50 130 130 ILE ILE B . n B 1 51 ILE 51 131 131 ILE ILE B . n B 1 52 GLN 52 132 132 GLN GLN B . n B 1 53 ASN 53 133 133 ASN ASN B . n B 1 54 LEU 54 134 134 LEU LEU B . n B 1 55 LYS 55 135 135 LYS LYS B . n B 1 56 ARG 56 136 136 ARG ARG B . n B 1 57 ASN 57 137 137 ASN ASN B . n B 1 58 SER 58 138 138 SER SER B . n B 1 59 SER 59 139 139 SER SER B . n B 1 60 TYR 60 140 140 TYR TYR B . n B 1 61 PHE 61 141 141 PHE PHE B . n B 1 62 LEU 62 142 142 LEU LEU B . n B 1 63 GLY 63 143 143 GLY GLY B . n B 1 64 LEU 64 144 144 LEU LEU B . n B 1 65 SER 65 145 145 SER SER B . n B 1 66 ASP 66 146 146 ASP ASP B . n B 1 67 PRO 67 147 147 PRO PRO B . n B 1 68 GLY 68 148 148 GLY GLY B . n B 1 69 GLY 69 149 149 GLY GLY B . n B 1 70 ARG 70 150 150 ARG ARG B . n B 1 71 ARG 71 151 151 ARG ARG B . n B 1 72 HIS 72 152 152 HIS HIS B . n B 1 73 TRP 73 153 153 TRP TRP B . n B 1 74 GLN 74 154 154 GLN GLN B . n B 1 75 TRP 75 155 155 TRP TRP B . n B 1 76 VAL 76 156 156 VAL VAL B . n B 1 77 ASP 77 157 157 ASP ASP B . n B 1 78 GLN 78 158 158 GLN GLN B . n B 1 79 THR 79 159 159 THR THR B . n B 1 80 PRO 80 160 160 PRO PRO B . n B 1 81 TYR 81 161 161 TYR TYR B . n B 1 82 ASN 82 162 162 ASN ASN B . n B 1 83 GLU 83 163 163 GLU GLU B . n B 1 84 ASN 84 164 164 ASN ASN B . n B 1 85 VAL 85 165 165 VAL VAL B . n B 1 86 THR 86 166 166 THR THR B . n B 1 87 PHE 87 167 167 PHE PHE B . n B 1 88 TRP 88 168 168 TRP TRP B . n B 1 89 HIS 89 169 169 HIS HIS B . n B 1 90 SER 90 170 170 SER SER B . n B 1 91 GLY 91 171 171 GLY GLY B . n B 1 92 GLU 92 172 172 GLU GLU B . n B 1 93 PRO 93 173 173 PRO PRO B . n B 1 94 ASN 94 174 174 ASN ASN B . n B 1 95 ASN 95 175 175 ASN ASN B . n B 1 96 LEU 96 176 176 LEU LEU B . n B 1 97 ASP 97 177 177 ASP ASP B . n B 1 98 GLU 98 178 178 GLU GLU B . n B 1 99 ARG 99 179 179 ARG ARG B . n B 1 100 CYS 100 180 180 CYS CYS B . n B 1 101 ALA 101 181 181 ALA ALA B . n B 1 102 ILE 102 182 182 ILE ILE B . n B 1 103 ILE 103 183 183 ILE ILE B . n B 1 104 ASN 104 184 184 ASN ASN B . n B 1 105 PHE 105 185 185 PHE PHE B . n B 1 106 ARG 106 186 186 ARG ARG B . n B 1 107 SER 107 187 187 SER SER B . n B 1 108 SER 108 188 ? ? ? B . n B 1 109 GLU 109 189 ? ? ? B . n B 1 110 GLU 110 190 190 GLU GLU B . n B 1 111 TRP 111 191 191 TRP TRP B . n B 1 112 GLY 112 192 192 GLY GLY B . n B 1 113 TRP 113 193 193 TRP TRP B . n B 1 114 ASN 114 194 194 ASN ASN B . n B 1 115 ASP 115 195 195 ASP ASP B . n B 1 116 ILE 116 196 196 ILE ILE B . n B 1 117 HIS 117 197 197 HIS HIS B . n B 1 118 CYS 118 198 198 CYS CYS B . n B 1 119 HIS 119 199 199 HIS HIS B . n B 1 120 VAL 120 200 200 VAL VAL B . n B 1 121 PRO 121 201 201 PRO PRO B . n B 1 122 GLN 122 202 202 GLN GLN B . n B 1 123 LYS 123 203 203 LYS LYS B . n B 1 124 SER 124 204 204 SER SER B . n B 1 125 ILE 125 205 205 ILE ILE B . n B 1 126 CYS 126 206 206 CYS CYS B . n B 1 127 LYS 127 207 207 LYS LYS B . n B 1 128 MET 128 208 208 MET MET B . n B 1 129 LYS 129 209 ? ? ? B . n B 1 130 LYS 130 210 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 301 1 HOH HOH A . C 2 HOH 2 302 4 HOH HOH A . D 2 HOH 1 301 2 HOH HOH B . D 2 HOH 2 302 3 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SERGUI 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.6.0117 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3WBQ _cell.length_a 117.185 _cell.length_b 37.324 _cell.length_c 70.957 _cell.angle_alpha 90.00 _cell.angle_beta 116.93 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WBQ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3WBQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_percent_sol 46.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.2M ammonium phosphate dibasic, 20%(w/v) PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-11-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Numerical link type Si(111) double crystal monochromator, liquid nitrogen cooling' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 3WBQ _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 2.3 _reflns.number_obs 12333 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.043 _reflns.pdbx_netI_over_sigmaI 41.1 _reflns.B_iso_Wilson_estimate 64.9 _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.3 _reflns_shell.d_res_low 2.34 _reflns_shell.percent_possible_all 99 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.477 _reflns_shell.meanI_over_sigI_obs 3.4 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3WBQ _refine.ls_number_reflns_obs 11643 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 63.27 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 98.39 _refine.ls_R_factor_obs 0.23889 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23615 _refine.ls_R_factor_R_free 0.29330 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 589 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.914 _refine.B_iso_mean 68.971 _refine.aniso_B[1][1] -1.36 _refine.aniso_B[2][2] 2.66 _refine.aniso_B[3][3] -1.46 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.17 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3WBP _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.431 _refine.pdbx_overall_ESU_R_Free 0.290 _refine.overall_SU_ML 0.224 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 9.160 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2051 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 4 _refine_hist.number_atoms_total 2055 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 63.27 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.020 ? 2119 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.294 1.889 ? 2879 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.579 5.000 ? 246 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 35.726 24.286 ? 112 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 15.880 15.000 ? 343 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 9.385 15.000 ? 12 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.093 0.200 ? 288 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1652 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.302 _refine_ls_shell.d_res_low 2.362 _refine_ls_shell.number_reflns_R_work 824 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 98.63 _refine_ls_shell.R_factor_R_free 0.373 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _database_PDB_matrix.entry_id 3WBQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3WBQ _struct.title 'Crystal structure of carbohydrate recognition domain of Blood Dendritic Cell Antigen-2 (BDCA2) lectin (crystal form-2)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WBQ _struct_keywords.pdbx_keywords 'Carbohydrate Binding Protein' _struct_keywords.text 'C-type lectin fold, immune receptor, complex-type N-glycan, Carbohydrate Binding Protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CLC4C_HUMAN _struct_ref.pdbx_db_accession Q8WTT0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;CPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTPYN ENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKK ; _struct_ref.pdbx_align_begin 83 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WBQ A 3 ? 130 ? Q8WTT0 83 ? 210 ? 83 210 2 1 3WBQ B 3 ? 130 ? Q8WTT0 83 ? 210 ? 83 210 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WBQ GLY A 1 ? UNP Q8WTT0 ? ? 'expression tag' 81 1 1 3WBQ SER A 2 ? UNP Q8WTT0 ? ? 'expression tag' 82 2 2 3WBQ GLY B 1 ? UNP Q8WTT0 ? ? 'expression tag' 81 3 2 3WBQ SER B 2 ? UNP Q8WTT0 ? ? 'expression tag' 82 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4190 ? 1 MORE -24 ? 1 'SSA (A^2)' 13370 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? MET A 34 ? SER A 103 MET A 114 1 ? 12 HELX_P HELX_P2 2 THR A 43 ? GLN A 52 ? THR A 123 GLN A 132 1 ? 10 HELX_P HELX_P3 3 SER B 23 ? MET B 34 ? SER B 103 MET B 114 1 ? 12 HELX_P HELX_P4 4 THR B 43 ? ASN B 53 ? THR B 123 ASN B 133 1 ? 11 HELX_P HELX_P5 5 ASN B 82 ? THR B 86 ? ASN B 162 THR B 166 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 14 SG ? ? A CYS 83 A CYS 94 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 126 SG ? ? A CYS 111 A CYS 206 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 100 SG ? ? ? 1_555 A CYS 118 SG ? ? A CYS 180 A CYS 198 1_555 ? ? ? ? ? ? ? 2.050 ? ? disulf4 disulf ? ? B CYS 3 SG ? ? ? 1_555 B CYS 14 SG ? ? B CYS 83 B CYS 94 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? B CYS 31 SG ? ? ? 1_555 B CYS 126 SG ? ? B CYS 111 B CYS 206 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf6 disulf ? ? B CYS 100 SG ? ? ? 1_555 B CYS 118 SG ? ? B CYS 180 B CYS 198 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS A 14 ? CYS A 83 ? 1_555 CYS A 94 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 31 ? CYS A 126 ? CYS A 111 ? 1_555 CYS A 206 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 100 ? CYS A 118 ? CYS A 180 ? 1_555 CYS A 198 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 3 ? CYS B 14 ? CYS B 83 ? 1_555 CYS B 94 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 31 ? CYS B 126 ? CYS B 111 ? 1_555 CYS B 206 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 100 ? CYS B 118 ? CYS B 180 ? 1_555 CYS B 198 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 92 A . ? GLU 172 A PRO 93 A ? PRO 173 A 1 0.79 2 GLU 92 B . ? GLU 172 B PRO 93 B ? PRO 173 B 1 6.69 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 4 ? D ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 8 ? PHE A 10 ? THR A 88 PHE A 90 A 2 SER A 13 ? GLN A 22 ? SER A 93 GLN A 102 A 3 GLN A 122 ? MET A 128 ? GLN A 202 MET A 208 A 4 ASP A 37 ? LEU A 38 ? ASP A 117 LEU A 118 B 1 THR A 8 ? PHE A 10 ? THR A 88 PHE A 90 B 2 SER A 13 ? GLN A 22 ? SER A 93 GLN A 102 B 3 GLN A 122 ? MET A 128 ? GLN A 202 MET A 208 B 4 TYR A 60 ? ASP A 66 ? TYR A 140 ASP A 146 B 5 ARG A 99 ? PHE A 105 ? ARG A 179 PHE A 185 B 6 TRP A 111 ? ILE A 116 ? TRP A 191 ILE A 196 C 1 THR B 8 ? PHE B 10 ? THR B 88 PHE B 90 C 2 SER B 13 ? GLN B 22 ? SER B 93 GLN B 102 C 3 GLN B 122 ? MET B 128 ? GLN B 202 MET B 208 C 4 ASP B 37 ? LEU B 38 ? ASP B 117 LEU B 118 D 1 THR B 8 ? PHE B 10 ? THR B 88 PHE B 90 D 2 SER B 13 ? GLN B 22 ? SER B 93 GLN B 102 D 3 GLN B 122 ? MET B 128 ? GLN B 202 MET B 208 D 4 TYR B 60 ? ASP B 66 ? TYR B 140 ASP B 146 D 5 ARG B 99 ? PHE B 105 ? ARG B 179 PHE B 185 D 6 TRP B 111 ? HIS B 117 ? TRP B 191 HIS B 197 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 8 ? N THR A 88 O TYR A 15 ? O TYR A 95 A 2 3 N CYS A 14 ? N CYS A 94 O MET A 128 ? O MET A 208 A 3 4 O LYS A 127 ? O LYS A 207 N ASP A 37 ? N ASP A 117 B 1 2 N THR A 8 ? N THR A 88 O TYR A 15 ? O TYR A 95 B 2 3 N CYS A 14 ? N CYS A 94 O MET A 128 ? O MET A 208 B 3 4 O LYS A 123 ? O LYS A 203 N PHE A 61 ? N PHE A 141 B 4 5 N ASP A 66 ? N ASP A 146 O ARG A 99 ? O ARG A 179 B 5 6 N CYS A 100 ? N CYS A 180 O ILE A 116 ? O ILE A 196 C 1 2 N THR B 8 ? N THR B 88 O TYR B 15 ? O TYR B 95 C 2 3 N PHE B 16 ? N PHE B 96 O CYS B 126 ? O CYS B 206 C 3 4 O LYS B 127 ? O LYS B 207 N ASP B 37 ? N ASP B 117 D 1 2 N THR B 8 ? N THR B 88 O TYR B 15 ? O TYR B 95 D 2 3 N PHE B 16 ? N PHE B 96 O CYS B 126 ? O CYS B 206 D 3 4 O LYS B 123 ? O LYS B 203 N PHE B 61 ? N PHE B 141 D 4 5 N TYR B 60 ? N TYR B 140 O ILE B 103 ? O ILE B 183 D 5 6 N CYS B 100 ? N CYS B 180 O ILE B 116 ? O ILE B 196 # _pdbx_entry_details.entry_id 3WBQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 91 ? ? 48.98 -125.25 2 1 VAL A 165 ? ? -107.06 56.97 3 1 ARG A 186 ? ? -104.11 -160.01 4 1 PRO B 84 ? ? -39.60 129.56 5 1 GLN B 91 ? ? 51.82 -128.29 6 1 PRO B 147 ? ? -68.57 0.80 7 1 VAL B 165 ? ? -108.02 47.14 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 81 ? A GLY 1 2 1 Y 1 A SER 188 ? A SER 108 3 1 Y 1 A GLU 189 ? A GLU 109 4 1 Y 1 A LYS 210 ? A LYS 130 5 1 Y 1 B GLY 81 ? B GLY 1 6 1 Y 1 B SER 82 ? B SER 2 7 1 Y 1 B SER 188 ? B SER 108 8 1 Y 1 B GLU 189 ? B GLU 109 9 1 Y 1 B LYS 209 ? B LYS 129 10 1 Y 1 B LYS 210 ? B LYS 130 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3WBP _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 3WBQ _atom_sites.fract_transf_matrix[1][1] 0.008534 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004334 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026792 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015806 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_