HEADER OXIDOREDUCTASE 22-JUN-13 3WDS TITLE CRYSTAL STRUCTURE OF 3-QUINUCLIDINONE REDUCTASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-DEPENDENT QUINUCLIDINONE REDUCTASE; COMPND 3 CHAIN: A, B, D, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_COMMON: AGROBACTERIUM TUMEFACIENS; SOURCE 4 ORGANISM_TAXID: 358; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SDR, 3-QUINUCLIDINONE, ROSSMANN FOLD, CARBONYL REDUCTASE, NAD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.HOU,T.MIYAKAWA,M.TANOKURA REVDAT 3 08-NOV-23 3WDS 1 REMARK REVDAT 2 22-NOV-17 3WDS 1 REMARK REVDAT 1 25-JUN-14 3WDS 0 JRNL AUTH F.HOU,T.MIYAKAWA,M.KATAOKA,D.TAKESHITA,S.KUMASHIRO,K.NAGATA, JRNL AUTH 2 S.SHIMIZU,M.TANOKURA JRNL TITL STRUCTURAL BASIS FOR HIGH SUBSTRATE-BINDING AFFINITY OF JRNL TITL 2 3-QUINUCLIDINONE REDUCTASE ATQR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 88019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4645 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5352 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.1720 REMARK 3 BIN FREE R VALUE SET COUNT : 273 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.719 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7847 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7591 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10657 ; 2.025 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 17343 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1024 ; 6.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;39.067 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1232 ;13.399 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;14.120 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1248 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9005 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1766 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92664 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1GEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 24%(W/V) PEG3350, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.18500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 71 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 112 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PHE A 164 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 TYR A 216 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 241 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 127 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 172 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 213 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP D 63 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 MET D 96 CG - SD - CE ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG D 97 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 172 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG D 172 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG D 244 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 27 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG C 27 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP C 71 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 MET C 96 CG - SD - CE ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG C 97 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG C 97 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG C 116 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 127 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG C 127 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 172 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 196 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 196 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG C 213 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG C 213 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP C 241 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP C 241 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP C 260 CA - C - O ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 116.64 -167.46 REMARK 500 LYS A 135 66.26 -66.96 REMARK 500 ALA A 142 -121.32 -90.46 REMARK 500 LEU A 152 -6.54 79.80 REMARK 500 PHE B 84 112.58 -168.01 REMARK 500 ALA B 142 -125.08 -90.32 REMARK 500 LEU B 152 -3.07 77.85 REMARK 500 PHE D 84 112.08 -167.61 REMARK 500 ALA D 142 -122.16 -93.56 REMARK 500 LEU D 152 -4.81 71.80 REMARK 500 PHE C 84 113.90 -169.91 REMARK 500 ALA C 142 -121.18 -91.78 REMARK 500 LEU C 152 -4.85 76.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 302 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3WDS A -2 260 PDB 3WDS 3WDS -2 260 DBREF 3WDS B -2 260 PDB 3WDS 3WDS -2 260 DBREF 3WDS D -2 260 PDB 3WDS 3WDS -2 260 DBREF 3WDS C -2 260 PDB 3WDS 3WDS -2 260 SEQRES 1 A 263 GLY SER HIS MET ALA GLY ILE PHE ASP LEU SER GLY ARG SEQRES 2 A 263 LYS ALA ILE VAL THR GLY GLY SER LYS GLY ILE GLY ALA SEQRES 3 A 263 ALA ILE ALA ARG ALA LEU ASP LYS ALA GLY ALA THR VAL SEQRES 4 A 263 ALA ILE ALA ASP LEU ASP VAL MET ALA ALA GLN ALA VAL SEQRES 5 A 263 VAL ALA GLY LEU GLU ASN GLY GLY PHE ALA VAL GLU VAL SEQRES 6 A 263 ASP VAL THR LYS ARG ALA SER VAL ASP ALA ALA MET GLN SEQRES 7 A 263 LYS ALA ILE ASP ALA LEU GLY GLY PHE ASP LEU LEU CYS SEQRES 8 A 263 ALA ASN ALA GLY VAL SER THR MET ARG PRO ALA VAL ASP SEQRES 9 A 263 ILE THR ASP GLU GLU TRP ASP PHE ASN PHE ASP VAL ASN SEQRES 10 A 263 ALA ARG GLY VAL PHE LEU ALA ASN GLN ILE ALA CYS ARG SEQRES 11 A 263 HIS PHE LEU ALA SER ASN THR LYS GLY VAL ILE VAL ASN SEQRES 12 A 263 THR ALA SER LEU ALA ALA LYS VAL GLY ALA PRO LEU LEU SEQRES 13 A 263 ALA HIS TYR SER ALA SER LYS PHE ALA VAL PHE GLY TRP SEQRES 14 A 263 THR GLN ALA LEU ALA ARG GLU MET ALA PRO LYS ASN ILE SEQRES 15 A 263 ARG VAL ASN CYS VAL CYS PRO GLY PHE VAL LYS THR ALA SEQRES 16 A 263 MET GLN GLU ARG GLU ILE ILE TRP GLU ALA GLU LEU ARG SEQRES 17 A 263 GLY MET THR PRO GLU ALA VAL ARG ALA GLU TYR VAL SER SEQRES 18 A 263 LEU THR PRO LEU GLY ARG ILE GLU GLU PRO GLU ASP VAL SEQRES 19 A 263 ALA ASP VAL VAL VAL PHE LEU ALA SER ASP ALA ALA ARG SEQRES 20 A 263 PHE MET THR GLY GLN GLY ILE ASN VAL THR GLY GLY VAL SEQRES 21 A 263 ARG MET ASP SEQRES 1 B 263 GLY SER HIS MET ALA GLY ILE PHE ASP LEU SER GLY ARG SEQRES 2 B 263 LYS ALA ILE VAL THR GLY GLY SER LYS GLY ILE GLY ALA SEQRES 3 B 263 ALA ILE ALA ARG ALA LEU ASP LYS ALA GLY ALA THR VAL SEQRES 4 B 263 ALA ILE ALA ASP LEU ASP VAL MET ALA ALA GLN ALA VAL SEQRES 5 B 263 VAL ALA GLY LEU GLU ASN GLY GLY PHE ALA VAL GLU VAL SEQRES 6 B 263 ASP VAL THR LYS ARG ALA SER VAL ASP ALA ALA MET GLN SEQRES 7 B 263 LYS ALA ILE ASP ALA LEU GLY GLY PHE ASP LEU LEU CYS SEQRES 8 B 263 ALA ASN ALA GLY VAL SER THR MET ARG PRO ALA VAL ASP SEQRES 9 B 263 ILE THR ASP GLU GLU TRP ASP PHE ASN PHE ASP VAL ASN SEQRES 10 B 263 ALA ARG GLY VAL PHE LEU ALA ASN GLN ILE ALA CYS ARG SEQRES 11 B 263 HIS PHE LEU ALA SER ASN THR LYS GLY VAL ILE VAL ASN SEQRES 12 B 263 THR ALA SER LEU ALA ALA LYS VAL GLY ALA PRO LEU LEU SEQRES 13 B 263 ALA HIS TYR SER ALA SER LYS PHE ALA VAL PHE GLY TRP SEQRES 14 B 263 THR GLN ALA LEU ALA ARG GLU MET ALA PRO LYS ASN ILE SEQRES 15 B 263 ARG VAL ASN CYS VAL CYS PRO GLY PHE VAL LYS THR ALA SEQRES 16 B 263 MET GLN GLU ARG GLU ILE ILE TRP GLU ALA GLU LEU ARG SEQRES 17 B 263 GLY MET THR PRO GLU ALA VAL ARG ALA GLU TYR VAL SER SEQRES 18 B 263 LEU THR PRO LEU GLY ARG ILE GLU GLU PRO GLU ASP VAL SEQRES 19 B 263 ALA ASP VAL VAL VAL PHE LEU ALA SER ASP ALA ALA ARG SEQRES 20 B 263 PHE MET THR GLY GLN GLY ILE ASN VAL THR GLY GLY VAL SEQRES 21 B 263 ARG MET ASP SEQRES 1 D 263 GLY SER HIS MET ALA GLY ILE PHE ASP LEU SER GLY ARG SEQRES 2 D 263 LYS ALA ILE VAL THR GLY GLY SER LYS GLY ILE GLY ALA SEQRES 3 D 263 ALA ILE ALA ARG ALA LEU ASP LYS ALA GLY ALA THR VAL SEQRES 4 D 263 ALA ILE ALA ASP LEU ASP VAL MET ALA ALA GLN ALA VAL SEQRES 5 D 263 VAL ALA GLY LEU GLU ASN GLY GLY PHE ALA VAL GLU VAL SEQRES 6 D 263 ASP VAL THR LYS ARG ALA SER VAL ASP ALA ALA MET GLN SEQRES 7 D 263 LYS ALA ILE ASP ALA LEU GLY GLY PHE ASP LEU LEU CYS SEQRES 8 D 263 ALA ASN ALA GLY VAL SER THR MET ARG PRO ALA VAL ASP SEQRES 9 D 263 ILE THR ASP GLU GLU TRP ASP PHE ASN PHE ASP VAL ASN SEQRES 10 D 263 ALA ARG GLY VAL PHE LEU ALA ASN GLN ILE ALA CYS ARG SEQRES 11 D 263 HIS PHE LEU ALA SER ASN THR LYS GLY VAL ILE VAL ASN SEQRES 12 D 263 THR ALA SER LEU ALA ALA LYS VAL GLY ALA PRO LEU LEU SEQRES 13 D 263 ALA HIS TYR SER ALA SER LYS PHE ALA VAL PHE GLY TRP SEQRES 14 D 263 THR GLN ALA LEU ALA ARG GLU MET ALA PRO LYS ASN ILE SEQRES 15 D 263 ARG VAL ASN CYS VAL CYS PRO GLY PHE VAL LYS THR ALA SEQRES 16 D 263 MET GLN GLU ARG GLU ILE ILE TRP GLU ALA GLU LEU ARG SEQRES 17 D 263 GLY MET THR PRO GLU ALA VAL ARG ALA GLU TYR VAL SER SEQRES 18 D 263 LEU THR PRO LEU GLY ARG ILE GLU GLU PRO GLU ASP VAL SEQRES 19 D 263 ALA ASP VAL VAL VAL PHE LEU ALA SER ASP ALA ALA ARG SEQRES 20 D 263 PHE MET THR GLY GLN GLY ILE ASN VAL THR GLY GLY VAL SEQRES 21 D 263 ARG MET ASP SEQRES 1 C 263 GLY SER HIS MET ALA GLY ILE PHE ASP LEU SER GLY ARG SEQRES 2 C 263 LYS ALA ILE VAL THR GLY GLY SER LYS GLY ILE GLY ALA SEQRES 3 C 263 ALA ILE ALA ARG ALA LEU ASP LYS ALA GLY ALA THR VAL SEQRES 4 C 263 ALA ILE ALA ASP LEU ASP VAL MET ALA ALA GLN ALA VAL SEQRES 5 C 263 VAL ALA GLY LEU GLU ASN GLY GLY PHE ALA VAL GLU VAL SEQRES 6 C 263 ASP VAL THR LYS ARG ALA SER VAL ASP ALA ALA MET GLN SEQRES 7 C 263 LYS ALA ILE ASP ALA LEU GLY GLY PHE ASP LEU LEU CYS SEQRES 8 C 263 ALA ASN ALA GLY VAL SER THR MET ARG PRO ALA VAL ASP SEQRES 9 C 263 ILE THR ASP GLU GLU TRP ASP PHE ASN PHE ASP VAL ASN SEQRES 10 C 263 ALA ARG GLY VAL PHE LEU ALA ASN GLN ILE ALA CYS ARG SEQRES 11 C 263 HIS PHE LEU ALA SER ASN THR LYS GLY VAL ILE VAL ASN SEQRES 12 C 263 THR ALA SER LEU ALA ALA LYS VAL GLY ALA PRO LEU LEU SEQRES 13 C 263 ALA HIS TYR SER ALA SER LYS PHE ALA VAL PHE GLY TRP SEQRES 14 C 263 THR GLN ALA LEU ALA ARG GLU MET ALA PRO LYS ASN ILE SEQRES 15 C 263 ARG VAL ASN CYS VAL CYS PRO GLY PHE VAL LYS THR ALA SEQRES 16 C 263 MET GLN GLU ARG GLU ILE ILE TRP GLU ALA GLU LEU ARG SEQRES 17 C 263 GLY MET THR PRO GLU ALA VAL ARG ALA GLU TYR VAL SER SEQRES 18 C 263 LEU THR PRO LEU GLY ARG ILE GLU GLU PRO GLU ASP VAL SEQRES 19 C 263 ALA ASP VAL VAL VAL PHE LEU ALA SER ASP ALA ALA ARG SEQRES 20 C 263 PHE MET THR GLY GLN GLY ILE ASN VAL THR GLY GLY VAL SEQRES 21 C 263 ARG MET ASP HET NAD A 301 44 HET ACY A 302 4 HET EDO A 303 4 HET NAD B 301 44 HET ACY B 302 4 HET ACY D 301 4 HET NAD C 301 44 HET ACY C 302 4 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM ACY ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 NAD 3(C21 H27 N7 O14 P2) FORMUL 6 ACY 4(C2 H4 O2) FORMUL 7 EDO C2 H6 O2 FORMUL 13 HOH *543(H2 O) HELIX 1 1 LYS A 19 ALA A 32 1 14 HELIX 2 2 ASP A 42 GLY A 52 1 11 HELIX 3 3 LYS A 66 GLY A 82 1 17 HELIX 4 4 PRO A 98 ILE A 102 5 5 HELIX 5 5 THR A 103 ALA A 115 1 13 HELIX 6 6 ALA A 115 ASN A 133 1 19 HELIX 7 7 SER A 143 LYS A 147 5 5 HELIX 8 8 LEU A 153 ALA A 175 1 23 HELIX 9 9 PRO A 176 ASN A 178 5 3 HELIX 10 10 THR A 191 GLY A 206 1 16 HELIX 11 11 THR A 208 LEU A 219 1 12 HELIX 12 12 GLU A 227 SER A 240 1 14 HELIX 13 13 ASP A 241 ARG A 244 5 4 HELIX 14 14 LYS B 19 ALA B 32 1 14 HELIX 15 15 ASP B 42 GLY B 52 1 11 HELIX 16 16 LYS B 66 GLY B 82 1 17 HELIX 17 17 PRO B 98 ILE B 102 5 5 HELIX 18 18 THR B 103 ALA B 115 1 13 HELIX 19 19 ALA B 115 SER B 132 1 18 HELIX 20 20 SER B 143 LYS B 147 5 5 HELIX 21 21 LEU B 153 ALA B 175 1 23 HELIX 22 22 PRO B 176 ASN B 178 5 3 HELIX 23 23 THR B 191 GLY B 206 1 16 HELIX 24 24 THR B 208 LEU B 219 1 12 HELIX 25 25 GLU B 227 SER B 240 1 14 HELIX 26 26 ASP B 241 ARG B 244 5 4 HELIX 27 27 LYS D 19 ALA D 32 1 14 HELIX 28 28 ASP D 42 GLY D 52 1 11 HELIX 29 29 LYS D 66 GLY D 82 1 17 HELIX 30 30 PRO D 98 ILE D 102 5 5 HELIX 31 31 THR D 103 ALA D 115 1 13 HELIX 32 32 ALA D 115 SER D 132 1 18 HELIX 33 33 SER D 143 LYS D 147 5 5 HELIX 34 34 LEU D 153 ALA D 175 1 23 HELIX 35 35 PRO D 176 ASN D 178 5 3 HELIX 36 36 MET D 193 GLY D 206 1 14 HELIX 37 37 THR D 208 LEU D 219 1 12 HELIX 38 38 GLU D 227 SER D 240 1 14 HELIX 39 39 ASP D 241 ARG D 244 5 4 HELIX 40 40 LYS C 19 ALA C 32 1 14 HELIX 41 41 ASP C 42 GLY C 52 1 11 HELIX 42 42 LYS C 66 GLY C 82 1 17 HELIX 43 43 PRO C 98 ILE C 102 5 5 HELIX 44 44 THR C 103 ALA C 115 1 13 HELIX 45 45 ALA C 115 SER C 132 1 18 HELIX 46 46 SER C 143 LYS C 147 5 5 HELIX 47 47 LEU C 153 ALA C 175 1 23 HELIX 48 48 PRO C 176 ASN C 178 5 3 HELIX 49 49 THR C 191 GLY C 206 1 16 HELIX 50 50 THR C 208 LEU C 219 1 12 HELIX 51 51 GLU C 227 SER C 240 1 14 HELIX 52 52 ASP C 241 ARG C 244 5 4 SHEET 1 A 7 PHE A 58 GLU A 61 0 SHEET 2 A 7 THR A 35 ASP A 40 1 N ILE A 38 O PHE A 58 SHEET 3 A 7 LYS A 11 THR A 15 1 N ALA A 12 O ALA A 37 SHEET 4 A 7 LEU A 86 ALA A 89 1 O CYS A 88 N ILE A 13 SHEET 5 A 7 VAL A 137 THR A 141 1 O VAL A 137 N LEU A 87 SHEET 6 A 7 ARG A 180 PRO A 186 1 O ASN A 182 N ASN A 140 SHEET 7 A 7 GLY A 250 VAL A 253 1 O ILE A 251 N CYS A 185 SHEET 1 B 7 GLY B 57 GLU B 61 0 SHEET 2 B 7 THR B 35 ASP B 40 1 N ILE B 38 O PHE B 58 SHEET 3 B 7 LYS B 11 THR B 15 1 N ALA B 12 O ALA B 37 SHEET 4 B 7 LEU B 86 ALA B 89 1 O CYS B 88 N ILE B 13 SHEET 5 B 7 VAL B 137 THR B 141 1 O THR B 141 N ALA B 89 SHEET 6 B 7 ARG B 180 PRO B 186 1 O ASN B 182 N ASN B 140 SHEET 7 B 7 GLY B 250 VAL B 253 1 O ILE B 251 N CYS B 183 SHEET 1 C 7 PHE D 58 GLU D 61 0 SHEET 2 C 7 THR D 35 ASP D 40 1 N ILE D 38 O PHE D 58 SHEET 3 C 7 LYS D 11 THR D 15 1 N ALA D 12 O ALA D 37 SHEET 4 C 7 LEU D 86 ALA D 89 1 O CYS D 88 N ILE D 13 SHEET 5 C 7 VAL D 137 THR D 141 1 O VAL D 139 N LEU D 87 SHEET 6 C 7 ARG D 180 PRO D 186 1 O ASN D 182 N ASN D 140 SHEET 7 C 7 GLY D 250 VAL D 253 1 O ILE D 251 N CYS D 185 SHEET 1 D 7 PHE C 58 GLU C 61 0 SHEET 2 D 7 THR C 35 ASP C 40 1 N ILE C 38 O PHE C 58 SHEET 3 D 7 LYS C 11 THR C 15 1 N ALA C 12 O THR C 35 SHEET 4 D 7 LEU C 86 ALA C 89 1 O CYS C 88 N ILE C 13 SHEET 5 D 7 VAL C 137 THR C 141 1 O THR C 141 N ALA C 89 SHEET 6 D 7 ARG C 180 PRO C 186 1 O ASN C 182 N ASN C 140 SHEET 7 D 7 GLY C 250 VAL C 253 1 O ILE C 251 N CYS C 185 SITE 1 AC1 30 SER A 18 LYS A 19 GLY A 20 ILE A 21 SITE 2 AC1 30 ASP A 40 LEU A 41 VAL A 62 ASP A 63 SITE 3 AC1 30 VAL A 64 ASN A 90 ALA A 91 GLY A 92 SITE 4 AC1 30 THR A 141 ALA A 142 SER A 143 TYR A 156 SITE 5 AC1 30 LYS A 160 PRO A 186 GLY A 187 VAL A 189 SITE 6 AC1 30 THR A 191 MET A 193 ARG A 196 HOH A 409 SITE 7 AC1 30 HOH A 419 HOH A 431 HOH A 484 HOH A 485 SITE 8 AC1 30 HOH A 503 HOH A 509 SITE 1 AC2 10 ASN A 252 VAL A 253 THR A 254 GLY A 255 SITE 2 AC2 10 GLY A 256 ARG A 258 PHE B 245 MET B 246 SITE 3 AC2 10 THR B 247 GLN B 249 SITE 1 AC3 3 GLU A 61 SER A 69 HOH A 454 SITE 1 AC4 27 GLY B 16 SER B 18 LYS B 19 GLY B 20 SITE 2 AC4 27 ILE B 21 ASP B 40 LEU B 41 VAL B 62 SITE 3 AC4 27 ASP B 63 VAL B 64 ASN B 90 ALA B 91 SITE 4 AC4 27 GLY B 92 THR B 141 ALA B 142 SER B 143 SITE 5 AC4 27 TYR B 156 LYS B 160 PRO B 186 GLY B 187 SITE 6 AC4 27 VAL B 189 THR B 191 MET B 193 ARG B 196 SITE 7 AC4 27 HOH B 410 HOH B 433 HOH B 489 SITE 1 AC5 9 PHE A 245 MET A 246 THR A 247 GLN A 249 SITE 2 AC5 9 ASN B 252 VAL B 253 THR B 254 GLY B 255 SITE 3 AC5 9 GLY B 256 SITE 1 AC6 10 PHE C 245 MET C 246 THR C 247 GLN C 249 SITE 2 AC6 10 ASN D 252 VAL D 253 THR D 254 GLY D 255 SITE 3 AC6 10 GLY D 256 ARG D 258 SITE 1 AC7 29 GLY C 16 SER C 18 LYS C 19 GLY C 20 SITE 2 AC7 29 ILE C 21 ASP C 40 LEU C 41 VAL C 62 SITE 3 AC7 29 ASP C 63 VAL C 64 ASN C 90 ALA C 91 SITE 4 AC7 29 GLY C 92 THR C 141 ALA C 142 SER C 143 SITE 5 AC7 29 TYR C 156 LYS C 160 GLY C 187 VAL C 189 SITE 6 AC7 29 THR C 191 MET C 193 ARG C 196 HOH C 404 SITE 7 AC7 29 HOH C 468 HOH C 481 HOH C 484 HOH C 486 SITE 8 AC7 29 HOH C 554 SITE 1 AC8 10 ASN C 252 VAL C 253 THR C 254 GLY C 255 SITE 2 AC8 10 GLY C 256 ARG C 258 PHE D 245 MET D 246 SITE 3 AC8 10 THR D 247 GLN D 249 CRYST1 61.970 126.370 62.020 90.00 110.50 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016137 0.000000 0.006033 0.00000 SCALE2 0.000000 0.007913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017214 0.00000