HEADER TRANSCRIPTION 26-JUN-13 3WDZ TITLE CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH PHOSPHORYLATED P62 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KEAP1-DC, UNP RESIDUES 321-609; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2, INRF2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM SEQUESTOSOME-1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: KEAP1 INTERACTING REGION (KIR), UNP RESIDUES 346-359; COMPND 11 SYNONYM: STONE14, UBIQUITIN-BINDING PROTEIN P62; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KEAP1, INRF2, KIAA0132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET101; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: MOUSE; SOURCE 15 ORGANISM_TAXID: 10090; SOURCE 16 OTHER_DETAILS: MOUSE KEYWDS KELCH REPEAT, TRANSCRIPTION, P62, NUCLEUS EXPDTA X-RAY DIFFRACTION AUTHOR T.FUKUTOMI,K.TAKAGI,T.MIZUSHIMA,K.TANAKA,M.KOMATSU,M.YAMAMOTO REVDAT 3 08-NOV-23 3WDZ 1 SEQADV LINK REVDAT 2 25-DEC-13 3WDZ 1 JRNL SOURCE REVDAT 1 04-SEP-13 3WDZ 0 JRNL AUTH Y.ICHIMURA,S.WAGURI,Y.S.SOU,S.KAGEYAMA,J.HASEGAWA, JRNL AUTH 2 R.ISHIMURA,T.SAITO,Y.YANG,T.KOUNO,T.FUKUTOMI,T.HOSHII, JRNL AUTH 3 A.HIRAO,K.TAKAGI,T.MIZUSHIMA,H.MOTOHASHI,M.S.LEE, JRNL AUTH 4 T.YOSHIMORI,K.TANAKA,M.YAMAMOTO,M.KOMATSU JRNL TITL PHOSPHORYLATION OF P62 ACTIVATES THE KEAP1-NRF2 PATHWAY JRNL TITL 2 DURING SELECTIVE AUTOPHAGY. JRNL REF MOL.CELL V. 51 618 2013 JRNL REFN ISSN 1097-2765 JRNL PMID 24011591 JRNL DOI 10.1016/J.MOLCEL.2013.08.003 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 11087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 713 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2276 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 5 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 1.19000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.546 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.307 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.195 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3171 ; 1.831 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;33.891 ;22.883 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;16.004 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.193 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1829 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000096215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1X2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL (PH 8.8), 0.2M SODIUM REMARK 280 NITRATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K, PH 8.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.33867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.66933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.66933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.33867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 299 REMARK 465 GLY A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 ASP A 307 REMARK 465 TYR A 308 REMARK 465 ASP A 309 REMARK 465 ILE A 310 REMARK 465 PRO A 311 REMARK 465 THR A 312 REMARK 465 THR A 313 REMARK 465 GLU A 314 REMARK 465 ASN A 315 REMARK 465 LEU A 316 REMARK 465 TYR A 317 REMARK 465 PHE A 318 REMARK 465 GLN A 319 REMARK 465 GLY A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 VAL A 324 REMARK 465 SER B 357 REMARK 465 LEU B 358 REMARK 465 GLN B 359 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 451 CG HIS A 451 CD2 0.059 REMARK 500 TRP A 497 CE2 TRP A 497 CD2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 362 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 335 -81.73 -129.73 REMARK 500 ASP A 385 52.46 -106.55 REMARK 500 ARG A 447 21.02 -141.14 REMARK 500 VAL A 453 -164.53 -114.18 REMARK 500 THR A 481 -57.16 -155.97 REMARK 500 HIS A 516 -119.29 50.47 REMARK 500 GLN A 528 -60.04 -126.30 REMARK 500 GLU A 542 19.64 53.73 REMARK 500 HIS A 575 -65.01 -134.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ADE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF KEAP1 IN COMPLEX WITH SEQUESTOSOME-1/P62 REMARK 900 RELATED ID: 1X2J RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR THE DEFECTS OF HUMAN LUNG CANCER SOMATIC REMARK 900 MUTATIONS IN THE REPRESSION ACTIVITY OF KEAP1 ON NRF2 DBREF 3WDZ A 321 609 UNP Q9Z2X8 KEAP1_MOUSE 321 609 DBREF 3WDZ B 346 359 UNP Q64337 SQSTM_MOUSE 346 359 SEQADV 3WDZ MET A 299 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ GLY A 300 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 301 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 302 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 303 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 304 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 305 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ HIS A 306 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ ASP A 307 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ TYR A 308 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ ASP A 309 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ ILE A 310 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ PRO A 311 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ THR A 312 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ THR A 313 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ GLU A 314 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ ASN A 315 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ LEU A 316 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ TYR A 317 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ PHE A 318 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ GLN A 319 UNP Q9Z2X8 EXPRESSION TAG SEQADV 3WDZ GLY A 320 UNP Q9Z2X8 EXPRESSION TAG SEQRES 1 A 311 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 311 THR THR GLU ASN LEU TYR PHE GLN GLY ALA PRO LYS VAL SEQRES 3 A 311 GLY ARG LEU ILE TYR THR ALA GLY GLY TYR PHE ARG GLN SEQRES 4 A 311 SER LEU SER TYR LEU GLU ALA TYR ASN PRO SER ASN GLY SEQRES 5 A 311 SER TRP LEU ARG LEU ALA ASP LEU GLN VAL PRO ARG SER SEQRES 6 A 311 GLY LEU ALA GLY CYS VAL VAL GLY GLY LEU LEU TYR ALA SEQRES 7 A 311 VAL GLY GLY ARG ASN ASN SER PRO ASP GLY ASN THR ASP SEQRES 8 A 311 SER SER ALA LEU ASP CYS TYR ASN PRO MET THR ASN GLN SEQRES 9 A 311 TRP SER PRO CYS ALA SER MET SER VAL PRO ARG ASN ARG SEQRES 10 A 311 ILE GLY VAL GLY VAL ILE ASP GLY HIS ILE TYR ALA VAL SEQRES 11 A 311 GLY GLY SER HIS GLY CYS ILE HIS HIS SER SER VAL GLU SEQRES 12 A 311 ARG TYR GLU PRO GLU ARG ASP GLU TRP HIS LEU VAL ALA SEQRES 13 A 311 PRO MET LEU THR ARG ARG ILE GLY VAL GLY VAL ALA VAL SEQRES 14 A 311 LEU ASN ARG LEU LEU TYR ALA VAL GLY GLY PHE ASP GLY SEQRES 15 A 311 THR ASN ARG LEU ASN SER ALA GLU CYS TYR TYR PRO GLU SEQRES 16 A 311 ARG ASN GLU TRP ARG MET ILE THR PRO MET ASN THR ILE SEQRES 17 A 311 ARG SER GLY ALA GLY VAL CYS VAL LEU HIS ASN CYS ILE SEQRES 18 A 311 TYR ALA ALA GLY GLY TYR ASP GLY GLN ASP GLN LEU ASN SEQRES 19 A 311 SER VAL GLU ARG TYR ASP VAL GLU THR GLU THR TRP THR SEQRES 20 A 311 PHE VAL ALA PRO MET ARG HIS HIS ARG SER ALA LEU GLY SEQRES 21 A 311 ILE THR VAL HIS GLN GLY LYS ILE TYR VAL LEU GLY GLY SEQRES 22 A 311 TYR ASP GLY HIS THR PHE LEU ASP SER VAL GLU CYS TYR SEQRES 23 A 311 ASP PRO ASP SER ASP THR TRP SER GLU VAL THR ARG MET SEQRES 24 A 311 THR SER GLY ARG SER GLY VAL GLY VAL ALA VAL THR SEQRES 1 B 14 LYS GLU VAL ASP PRO SEP THR GLY GLU LEU GLN SER LEU SEQRES 2 B 14 GLN MODRES 3WDZ SEP B 351 SER PHOSPHOSERINE HET SEP B 351 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 HOH *5(H2 O) HELIX 1 1 PRO A 445 ASP A 448 5 4 SHEET 1 A 4 TRP A 352 ARG A 354 0 SHEET 2 A 4 LEU A 342 TYR A 345 -1 N ALA A 344 O LEU A 353 SHEET 3 A 4 LEU A 327 ALA A 331 -1 N THR A 330 O GLU A 343 SHEET 4 A 4 GLY A 605 THR A 609 -1 O ALA A 607 N TYR A 329 SHEET 1 B 4 ALA A 366 VAL A 370 0 SHEET 2 B 4 LEU A 373 VAL A 377 -1 O VAL A 377 N ALA A 366 SHEET 3 B 4 LEU A 393 ASN A 397 -1 O TYR A 396 N LEU A 374 SHEET 4 B 4 GLN A 402 CYS A 406 -1 O CYS A 406 N LEU A 393 SHEET 1 C 2 ARG A 380 SER A 383 0 SHEET 2 C 2 GLY A 386 ASP A 389 -1 O THR A 388 N ASN A 381 SHEET 1 D 4 GLY A 417 ILE A 421 0 SHEET 2 D 4 HIS A 424 VAL A 428 -1 O VAL A 428 N GLY A 417 SHEET 3 D 4 VAL A 440 GLU A 444 -1 O GLU A 441 N ALA A 427 SHEET 4 D 4 GLU A 449 LEU A 452 -1 O GLU A 449 N GLU A 444 SHEET 1 E 2 SER A 431 HIS A 432 0 SHEET 2 E 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 F 4 GLY A 464 LEU A 468 0 SHEET 2 F 4 LEU A 471 PHE A 478 -1 O LEU A 471 N LEU A 468 SHEET 3 F 4 ARG A 483 TYR A 491 -1 O TYR A 490 N LEU A 472 SHEET 4 F 4 GLU A 496 ILE A 500 -1 O GLU A 496 N TYR A 491 SHEET 1 G 4 GLY A 511 LEU A 515 0 SHEET 2 G 4 CYS A 518 ALA A 522 -1 O CYS A 518 N LEU A 515 SHEET 3 G 4 VAL A 534 ASP A 538 -1 O TYR A 537 N ILE A 519 SHEET 4 G 4 TRP A 544 VAL A 547 -1 O VAL A 547 N VAL A 534 SHEET 1 H 4 GLY A 558 VAL A 561 0 SHEET 2 H 4 ILE A 566 LEU A 569 -1 O TYR A 567 N THR A 560 SHEET 3 H 4 SER A 580 ASP A 585 -1 O TYR A 584 N ILE A 566 SHEET 4 H 4 THR A 590 ARG A 596 -1 O SER A 592 N CYS A 583 SSBOND 1 CYS A 434 CYS A 434 1555 4555 2.49 LINK C PRO B 350 N SEP B 351 1555 1555 1.34 LINK C SEP B 351 N THR B 352 1555 1555 1.34 CRYST1 75.149 75.149 113.008 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013307 0.007683 0.000000 0.00000 SCALE2 0.000000 0.015365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008849 0.00000