HEADER OXYGEN TRANSPORT 24-JUL-13 3WFW TITLE CRYSTAL STRUCTURE OF THE CLOSED FORM OF THE HGBRL'S GLOBIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN-LIKE FLAVOPROTEIN FUSED TO ROADBLOCK/LC7 DOMAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL GLOBIN DOMAIN, UNP RESIDUES 1-133; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLACIDIPHILUM INFERNORUM; SOURCE 3 ORGANISM_TAXID: 481448; SOURCE 4 STRAIN: V4; SOURCE 5 GENE: HMP, MINF_1089; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS GLOBIN, SIGNALLING, CLOSED FORM, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.H.TEH REVDAT 3 20-MAR-24 3WFW 1 REMARK REVDAT 2 30-DEC-20 3WFW 1 JRNL REMARK SEQADV REVDAT 1 06-AUG-14 3WFW 0 JRNL AUTH A.H.TEH,J.A.SAITO,N.NAJIMUDIN,M.ALAM JRNL TITL OPEN AND LYS-HIS HEXACOORDINATED CLOSED STRUCTURES OF A JRNL TITL 2 GLOBIN WITH SWAPPED PROXIMAL AND DISTAL SITES. JRNL REF SCI REP V. 5 11407 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26094577 JRNL DOI 10.1038/SREP11407 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 16812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 841 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5182 - 2.9972 0.92 2795 148 0.1493 0.1582 REMARK 3 2 2.9972 - 2.3794 0.90 2676 140 0.1614 0.1658 REMARK 3 3 2.3794 - 2.0788 0.90 2680 141 0.1435 0.1822 REMARK 3 4 2.0788 - 1.8888 0.89 2619 138 0.1512 0.1731 REMARK 3 5 1.8888 - 1.7534 0.89 2635 139 0.1503 0.2019 REMARK 3 6 1.7534 - 1.6500 0.87 2566 135 0.1462 0.1619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1339 REMARK 3 ANGLE : 1.201 1839 REMARK 3 CHIRALITY : 0.079 189 REMARK 3 PLANARITY : 0.006 224 REMARK 3 DIHEDRAL : 16.882 517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5520 -3.7136 32.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.2292 REMARK 3 T33: 0.1259 T12: -0.0234 REMARK 3 T13: 0.0070 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.2442 L22: 9.0719 REMARK 3 L33: 5.7037 L12: 1.2741 REMARK 3 L13: 1.1732 L23: -4.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.3945 S12: 0.6450 S13: 0.1695 REMARK 3 S21: -0.4698 S22: 0.3581 S23: 0.4377 REMARK 3 S31: 0.1481 S32: -0.5352 S33: 0.0469 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 5:12) REMARK 3 ORIGIN FOR THE GROUP (A): 16.0772 -2.4179 31.4978 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.1333 REMARK 3 T33: 0.1646 T12: 0.0137 REMARK 3 T13: 0.0108 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 3.2802 L22: 6.6010 REMARK 3 L33: 4.3575 L12: 3.2326 REMARK 3 L13: 3.4893 L23: 4.8737 REMARK 3 S TENSOR REMARK 3 S11: -0.1738 S12: -0.4429 S13: 0.5328 REMARK 3 S21: 0.4781 S22: 0.1239 S23: -0.2997 REMARK 3 S31: -0.0806 S32: 0.1032 S33: 0.0087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 13:18) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6891 -4.5757 28.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1725 REMARK 3 T33: 0.1452 T12: -0.0085 REMARK 3 T13: 0.0171 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 4.5091 L22: 3.5045 REMARK 3 L33: 8.2000 L12: 2.4993 REMARK 3 L13: 3.5419 L23: -1.0659 REMARK 3 S TENSOR REMARK 3 S11: 0.3087 S12: -0.6599 S13: -0.3930 REMARK 3 S21: 0.1921 S22: 0.0527 S23: 0.4594 REMARK 3 S31: 0.4419 S32: -0.7632 S33: -0.2697 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 19:26) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5506 -2.1616 21.6397 REMARK 3 T TENSOR REMARK 3 T11: 0.0821 T22: 0.1404 REMARK 3 T33: 0.1491 T12: 0.0117 REMARK 3 T13: 0.0041 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 5.9569 L22: 6.7849 REMARK 3 L33: 4.2931 L12: 0.5396 REMARK 3 L13: 0.1096 L23: -5.2931 REMARK 3 S TENSOR REMARK 3 S11: -0.0962 S12: -0.1460 S13: -0.4421 REMARK 3 S21: 0.0902 S22: 0.1612 S23: 0.2060 REMARK 3 S31: -0.0243 S32: -0.4809 S33: -0.0878 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 27:35) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4354 5.5577 11.2292 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.0875 REMARK 3 T33: 0.1061 T12: -0.0129 REMARK 3 T13: -0.0231 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 7.1137 L22: 7.7204 REMARK 3 L33: 8.5991 L12: -1.0081 REMARK 3 L13: -0.9867 L23: 1.8185 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.4676 S13: 0.2779 REMARK 3 S21: -0.2516 S22: -0.0055 S23: 0.0223 REMARK 3 S31: -0.3382 S32: 0.0081 S33: -0.0471 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 36:41) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3690 2.7930 2.6544 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.2269 REMARK 3 T33: 0.0848 T12: -0.0002 REMARK 3 T13: -0.0133 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 7.6616 L22: 9.7353 REMARK 3 L33: 5.8402 L12: -1.3473 REMARK 3 L13: 3.4861 L23: 2.4937 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: 0.2141 S13: 0.1469 REMARK 3 S21: -0.3951 S22: -0.1152 S23: -0.3803 REMARK 3 S31: -0.3277 S32: -0.0855 S33: 0.2083 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 42:48) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7828 -5.0174 7.9892 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.2148 REMARK 3 T33: 0.2353 T12: -0.0169 REMARK 3 T13: -0.0236 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 7.9331 L22: 3.1585 REMARK 3 L33: 7.9234 L12: 4.9183 REMARK 3 L13: 3.0795 L23: 1.2004 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.4264 S13: -0.8491 REMARK 3 S21: 0.0445 S22: 0.0654 S23: 0.0530 REMARK 3 S31: 0.4691 S32: -0.5583 S33: -0.0329 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 49:57) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7499 -6.1460 16.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.0865 REMARK 3 T33: 0.1613 T12: -0.0036 REMARK 3 T13: 0.0003 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 8.9921 L22: 5.7248 REMARK 3 L33: 8.4240 L12: 4.6046 REMARK 3 L13: 4.8449 L23: 4.3323 REMARK 3 S TENSOR REMARK 3 S11: 0.1180 S12: -0.1944 S13: -0.3610 REMARK 3 S21: 0.0911 S22: -0.0217 S23: 0.4646 REMARK 3 S31: 0.2062 S32: -0.4639 S33: -0.0939 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 58:64) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0499 -8.2761 19.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.0689 REMARK 3 T33: 0.0989 T12: -0.0164 REMARK 3 T13: 0.0213 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 8.3643 L22: 6.4819 REMARK 3 L33: 5.7551 L12: -1.5090 REMARK 3 L13: 5.9197 L23: -0.9755 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.4482 S13: 0.2114 REMARK 3 S21: -0.3923 S22: -0.0427 S23: -0.0832 REMARK 3 S31: 0.1220 S32: 0.2699 S33: -0.0114 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 65:74) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6094 -10.7224 28.2644 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1116 REMARK 3 T33: 0.1930 T12: -0.0150 REMARK 3 T13: 0.0104 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 4.8591 L22: 2.4213 REMARK 3 L33: 9.6733 L12: 1.7404 REMARK 3 L13: 6.7987 L23: 1.8744 REMARK 3 S TENSOR REMARK 3 S11: 0.3281 S12: -0.2497 S13: -0.9713 REMARK 3 S21: 0.0566 S22: 0.1056 S23: 0.0177 REMARK 3 S31: 0.2206 S32: -0.2429 S33: -0.4354 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 75:80) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7581 -10.3967 36.4211 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.1599 REMARK 3 T33: 0.1566 T12: -0.0251 REMARK 3 T13: 0.0135 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 6.2978 L22: 6.3195 REMARK 3 L33: 8.1194 L12: 0.0516 REMARK 3 L13: 0.4510 L23: -3.9378 REMARK 3 S TENSOR REMARK 3 S11: 0.0677 S12: -0.6378 S13: -0.6978 REMARK 3 S21: -0.0771 S22: -0.0627 S23: -0.1403 REMARK 3 S31: 0.3250 S32: -0.3905 S33: 0.0321 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 81:88) REMARK 3 ORIGIN FOR THE GROUP (A): 41.7335 -4.4662 40.8760 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.2738 REMARK 3 T33: 0.0926 T12: 0.0113 REMARK 3 T13: -0.0007 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 8.1329 L22: 8.0508 REMARK 3 L33: 7.2884 L12: -5.1180 REMARK 3 L13: -2.1026 L23: 1.9886 REMARK 3 S TENSOR REMARK 3 S11: -0.0891 S12: -0.7331 S13: -0.0227 REMARK 3 S21: 0.1803 S22: 0.1420 S23: -0.3741 REMARK 3 S31: 0.0182 S32: 0.1330 S33: -0.0311 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 89:93) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0065 4.4467 36.2003 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1368 REMARK 3 T33: 0.1643 T12: 0.0353 REMARK 3 T13: 0.0101 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 5.2882 L22: 7.7650 REMARK 3 L33: 6.5499 L12: 3.1649 REMARK 3 L13: 1.1406 L23: -5.2010 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.4693 S13: 0.2966 REMARK 3 S21: 0.2874 S22: 0.1975 S23: 0.0328 REMARK 3 S31: -0.3439 S32: 0.1074 S33: -0.1095 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 94:100) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4539 6.3608 26.1528 REMARK 3 T TENSOR REMARK 3 T11: 0.1046 T22: 0.0504 REMARK 3 T33: 0.1658 T12: -0.0008 REMARK 3 T13: -0.0084 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 5.5931 L22: 5.4295 REMARK 3 L33: 8.2779 L12: 3.4504 REMARK 3 L13: -0.7236 L23: -4.8856 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: -0.0871 S13: 0.6435 REMARK 3 S21: 0.0366 S22: -0.0528 S23: 0.2843 REMARK 3 S31: -0.2579 S32: -0.0788 S33: -0.0545 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 101:105) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5695 6.4438 18.8669 REMARK 3 T TENSOR REMARK 3 T11: 0.1350 T22: 0.0900 REMARK 3 T33: 0.1688 T12: -0.0363 REMARK 3 T13: -0.0251 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.6865 L22: 7.3517 REMARK 3 L33: 7.6970 L12: -2.9746 REMARK 3 L13: -1.5412 L23: -3.5050 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: 0.3669 S13: 0.1823 REMARK 3 S21: -0.3694 S22: -0.0841 S23: -0.2165 REMARK 3 S31: -0.0719 S32: 0.4952 S33: 0.2247 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN A AND RESID 106:110) REMARK 3 ORIGIN FOR THE GROUP (A): 47.1471 6.6693 12.0012 REMARK 3 T TENSOR REMARK 3 T11: 0.2334 T22: 0.3223 REMARK 3 T33: 0.2166 T12: 0.0350 REMARK 3 T13: 0.0021 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 9.4707 L22: 2.9957 REMARK 3 L33: 2.6874 L12: -0.6936 REMARK 3 L13: -2.1237 L23: -2.3884 REMARK 3 S TENSOR REMARK 3 S11: 0.4097 S12: 1.6613 S13: 0.4441 REMARK 3 S21: -0.8867 S22: -0.5581 S23: 0.0078 REMARK 3 S31: -0.1799 S32: 0.2627 S33: 0.1574 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN A AND RESID 111:120) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5837 6.1430 16.9287 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.0813 REMARK 3 T33: 0.1656 T12: -0.0102 REMARK 3 T13: -0.0128 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.0205 L22: 4.7938 REMARK 3 L33: 3.8504 L12: 1.4951 REMARK 3 L13: -1.5808 L23: -4.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.0732 S13: 0.1500 REMARK 3 S21: 0.0035 S22: 0.1548 S23: -0.0453 REMARK 3 S31: -0.1741 S32: 0.1852 S33: -0.1581 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN A AND RESID 121:129) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9906 0.3428 29.6498 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.0527 REMARK 3 T33: 0.1258 T12: 0.0158 REMARK 3 T13: 0.0000 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 6.7862 L22: 3.6624 REMARK 3 L33: 8.9416 L12: 4.8361 REMARK 3 L13: -3.7130 L23: -3.7245 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: -0.0264 S13: 0.2397 REMARK 3 S21: 0.0642 S22: 0.1606 S23: 0.0853 REMARK 3 S31: -0.2285 S32: -0.1929 S33: -0.1552 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN A AND RESID 130:134) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9684 -1.9530 39.2740 REMARK 3 T TENSOR REMARK 3 T11: 0.1473 T22: 0.2613 REMARK 3 T33: 0.1463 T12: -0.0023 REMARK 3 T13: 0.0037 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 9.3315 L22: 6.0236 REMARK 3 L33: 3.9642 L12: 1.0462 REMARK 3 L13: 4.8879 L23: -2.2948 REMARK 3 S TENSOR REMARK 3 S11: 0.2025 S12: -1.0768 S13: -0.2515 REMARK 3 S21: 0.1092 S22: -0.1652 S23: 0.0089 REMARK 3 S31: -0.0483 S32: -0.4816 S33: -0.0081 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN A AND RESID 135:138) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9491 -3.5316 46.6055 REMARK 3 T TENSOR REMARK 3 T11: 0.5237 T22: 0.5303 REMARK 3 T33: 0.2834 T12: 0.0186 REMARK 3 T13: 0.1933 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 2.0010 L22: 6.7224 REMARK 3 L33: 9.6853 L12: 2.1162 REMARK 3 L13: 9.8295 L23: 2.4708 REMARK 3 S TENSOR REMARK 3 S11: -0.6947 S12: -0.0147 S13: -0.1861 REMARK 3 S21: -0.4291 S22: -0.5626 S23: 0.0563 REMARK 3 S31: -0.6976 S32: -0.5238 S33: 1.0544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WFW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.02500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.06100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 10.96 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% 2-METHYL-2,4-PENTANEDIOL, 0.1M REMARK 280 TRIS-HCL, 0.2M (NH4)2HPO4, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.62000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.62000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.78879 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.94126 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 394 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 45 40.71 -109.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 81 NE2 REMARK 620 2 HEM A 201 NA 89.1 REMARK 620 3 HEM A 201 NB 88.9 91.5 REMARK 620 4 HEM A 201 NC 91.4 178.5 89.9 REMARK 620 5 HEM A 201 ND 92.4 90.4 177.7 88.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WFX RELATED DB: PDB DBREF 3WFW A 1 133 UNP B3DUZ1 B3DUZ1_METI4 1 133 SEQADV 3WFW HIS A 134 UNP B3DUZ1 EXPRESSION TAG SEQADV 3WFW HIS A 135 UNP B3DUZ1 EXPRESSION TAG SEQADV 3WFW HIS A 136 UNP B3DUZ1 EXPRESSION TAG SEQADV 3WFW HIS A 137 UNP B3DUZ1 EXPRESSION TAG SEQADV 3WFW HIS A 138 UNP B3DUZ1 EXPRESSION TAG SEQRES 1 A 138 MET THR ARG GLU GLU ILE LYS MET ILE GLN LYS SER TRP SEQRES 2 A 138 LEU ARG VAL ILE ASP LYS MET ASP GLU ALA GLY LEU LEU SEQRES 3 A 138 PHE TYR ARG ARG LEU PHE ASP VAL GLU PRO LYS VAL ARG SEQRES 4 A 138 PRO LEU PHE LYS ILE ASP ILE GLU LYS GLN GLY ARG LYS SEQRES 5 A 138 LEU MET ASP VAL LEU ASN TRP ILE VAL LEU ASN LEU GLN SEQRES 6 A 138 ASP ILE ASP ALA ALA LEU ASP ALA ALA ARG GLU LEU ALA SEQRES 7 A 138 ARG ARG HIS VAL LYS TYR GLY VAL LYS ALA GLU HIS TYR SEQRES 8 A 138 PRO VAL VAL GLY HIS THR LEU ILE TRP THR LEU ARG LYS SEQRES 9 A 138 MET ILE GLY SER GLU TRP THR LYS GLN LEU GLU GLN LEU SEQRES 10 A 138 TRP THR GLN ALA TYR GLU ALA LEU ALA GLN VAL MET ILE SEQRES 11 A 138 GLU GLU HIS HIS HIS HIS HIS HIS HET HEM A 201 43 HET MPD A 202 8 HET MPD A 203 8 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 MPD 2(C6 H14 O2) FORMUL 5 HOH *130(H2 O) HELIX 1 1 THR A 2 LYS A 19 1 18 HELIX 2 2 LYS A 19 GLU A 35 1 17 HELIX 3 3 PRO A 36 PHE A 42 5 7 HELIX 4 4 ASP A 45 GLY A 50 1 6 HELIX 5 5 ARG A 51 LEU A 71 1 21 HELIX 6 6 LEU A 71 GLY A 85 1 15 HELIX 7 7 LYS A 87 GLU A 89 5 3 HELIX 8 8 HIS A 90 GLY A 107 1 18 HELIX 9 9 SER A 108 TRP A 110 5 3 HELIX 10 10 THR A 111 HIS A 137 1 27 LINK NE2 HIS A 81 FE HEM A 201 1555 1555 2.12 SITE 1 AC1 21 LEU A 41 PHE A 42 ILE A 46 LYS A 52 SITE 2 AC1 21 ASP A 55 TRP A 59 LEU A 77 ARG A 80 SITE 3 AC1 21 HIS A 81 TYR A 84 VAL A 86 HIS A 90 SITE 4 AC1 21 TYR A 91 VAL A 94 TYR A 122 MET A 129 SITE 5 AC1 21 HOH A 301 HOH A 302 HOH A 310 HOH A 311 SITE 6 AC1 21 HOH A 312 SITE 1 AC2 4 ASN A 63 ALA A 121 ALA A 124 HOH A 376 SITE 1 AC3 9 LEU A 26 ARG A 29 ARG A 30 ASP A 33 SITE 2 AC3 9 GLN A 65 ASP A 66 ALA A 69 TRP A 100 SITE 3 AC3 9 HOH A 400 CRYST1 67.240 54.400 44.710 90.00 106.17 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014872 0.000000 0.004313 0.00000 SCALE2 0.000000 0.018382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023288 0.00000