HEADER HYDROLASE/PROTEIN BINDING 26-JUL-13 3WG5 TITLE 1510-N MEMBRANE-BOUND STOMATIN-SPECIFIC PROTEASE K138A MUTANT IN TITLE 2 COMPLEX WITH A SUBSTRATE PEPTIDE UNDER HEAT TREATMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 441AA LONG HYPOTHETICAL NFED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 16-236; COMPND 5 SYNONYM: 1510-N MEMBRANE PROTEASE; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PH1511 STOMATIN; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: UNP RESIDUES 234-243; COMPND 12 SYNONYM: UNCHARACTERIZED PROTEIN PH1511; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 GENE: PH1510; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII OT3; SOURCE 13 ORGANISM_TAXID: 70601; SOURCE 14 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS PROTEIN-PEPTIDE COMPLEX, ALPHA/BETA MOTIF, PROTEASE, MEMBRANE PROTEIN KEYWDS 2 STOMATIN, HYDROLASE-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,S.FUJII,I.MATSUI REVDAT 3 08-NOV-23 3WG5 1 REMARK REVDAT 2 01-JAN-20 3WG5 1 JRNL SEQADV REVDAT 1 23-OCT-13 3WG5 0 JRNL AUTH H.YOKOYAMA,D.KOBAYASHI,N.TAKIZAWA,S.FUJII,I.MATSUI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF A THERMOSTABLE JRNL TITL 2 MEMBRANE-BOUND STOMATIN-SPECIFIC PROTEASE. JRNL REF J.SYNCHROTRON RADIAT. V. 20 933 2013 JRNL REFN ESSN 1600-5775 JRNL PMID 24121343 JRNL DOI 10.1107/S0909049513021328 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.YOKOYAMA,N.TAKIZAWA,D.KOBAYASHI,I.MATSUI,S.FUJII REMARK 1 TITL CRYSTAL STRUCTURE OF A MEMBRANE STOMATIN-SPECIFIC PROTEASE REMARK 1 TITL 2 IN COMPLEX WITH A SUBSTRATE PEPTIDE REMARK 1 REF BIOCHEMISTRY V. 51 3872 2012 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 22475127 REMARK 1 DOI 10.1021/BI300098K REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2347 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3435 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3520 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4776 ; 1.171 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.012 ;24.820 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;15.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;22.934 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2597 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1781 ; 1.784 ; 4.049 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2221 ; 2.936 ; 6.054 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1738 ; 2.317 ; 4.307 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5365 ; 7.821 ;34.347 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 237 REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3365 4.6747 19.0322 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.0878 REMARK 3 T33: 0.1037 T12: -0.0012 REMARK 3 T13: 0.0770 T23: 0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.1549 L22: 1.7461 REMARK 3 L33: 1.2973 L12: 0.9586 REMARK 3 L13: 0.2165 L23: -0.5355 REMARK 3 S TENSOR REMARK 3 S11: -0.2233 S12: -0.0014 S13: -0.2234 REMARK 3 S21: -0.1259 S22: 0.1226 S23: -0.2007 REMARK 3 S31: -0.0962 S32: -0.1360 S33: 0.1007 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 237 REMARK 3 RESIDUE RANGE : B 301 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0170 42.6625 20.5318 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.0701 REMARK 3 T33: 0.0639 T12: -0.0463 REMARK 3 T13: -0.0467 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 1.6451 L22: 1.1845 REMARK 3 L33: 1.9952 L12: -0.0703 REMARK 3 L13: -0.5699 L23: 0.1821 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: -0.2556 S13: 0.2701 REMARK 3 S21: -0.3627 S22: 0.1618 S23: 0.1133 REMARK 3 S31: -0.0134 S32: 0.0235 S33: -0.0116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23169 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 61.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3VIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M IMIDAZOLE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.86900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 55.72400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 55.72400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.80350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 55.72400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 55.72400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.93450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 55.72400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.72400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.80350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 55.72400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.72400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.93450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.86900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLU A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 15 REMARK 465 SER B 16 REMARK 465 PRO B 17 REMARK 465 ILE B 18 REMARK 465 GLU B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 465 MET C 242 REMARK 465 GLU C 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 55.84 -110.18 REMARK 500 ALA A 95 64.30 -112.30 REMARK 500 SER A 97 -124.83 51.34 REMARK 500 ALA A 119 70.36 58.50 REMARK 500 ASN A 157 96.90 -64.70 REMARK 500 ALA B 95 72.07 -118.54 REMARK 500 SER B 97 -118.47 49.64 REMARK 500 ALA B 119 71.25 63.29 REMARK 500 ASN B 129 61.22 -101.58 REMARK 500 ILE B 165 -60.69 -95.96 REMARK 500 ASN B 216 71.84 59.03 REMARK 500 ASP B 236 5.15 -61.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VIV RELATED DB: PDB REMARK 900 THE SAME PROTEIN (K138A MUTANT) IN COMPLEX WITH A PEPTIDE REMARK 900 RELATED ID: 3BPP RELATED DB: PDB REMARK 900 THE SAME PROTEIN (K138A MUTANT) REMARK 900 RELATED ID: 2DEO RELATED DB: PDB REMARK 900 THE SAME PROTEIN (WILD-TYPE) DBREF 3WG5 A 16 236 UNP O59179 O59179_PYRHO 16 236 DBREF 3WG5 B 16 236 UNP O59179 O59179_PYRHO 16 236 DBREF 3WG5 C 234 243 UNP O59180 Y1511_PYRHO 234 243 SEQADV 3WG5 MET A 15 UNP O59179 EXPRESSION TAG SEQADV 3WG5 ALA A 138 UNP O59179 LYS 138 ENGINEERED MUTATION SEQADV 3WG5 LEU A 237 UNP O59179 EXPRESSION TAG SEQADV 3WG5 GLU A 238 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 239 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 240 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 241 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 242 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 243 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS A 244 UNP O59179 EXPRESSION TAG SEQADV 3WG5 MET B 15 UNP O59179 EXPRESSION TAG SEQADV 3WG5 ALA B 138 UNP O59179 LYS 138 ENGINEERED MUTATION SEQADV 3WG5 LEU B 237 UNP O59179 EXPRESSION TAG SEQADV 3WG5 GLU B 238 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 239 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 240 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 241 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 242 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 243 UNP O59179 EXPRESSION TAG SEQADV 3WG5 HIS B 244 UNP O59179 EXPRESSION TAG SEQRES 1 A 230 MET SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 A 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 A 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 A 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 A 230 ALA ASP ALA MET MET ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 A 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 A 230 ALA SER ALA ALA SER ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 A 230 SER HIS LEU ILE ALA MET ALA PRO GLY THR SER ILE GLY SEQRES 9 A 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 A 230 ILE ILE GLU ALA PRO PRO ALA ILE THR ASN TYR PHE ILE SEQRES 11 A 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 A 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 A 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 A 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 A 230 ASN GLY MET LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 A 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 A 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 A 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 230 MET SER PRO ILE LEU ALA LYS ASN ILE VAL TYR VAL ALA SEQRES 2 B 230 GLN ILE LYS GLY GLN ILE THR SER TYR THR TYR ASP GLN SEQRES 3 B 230 PHE ASP ARG TYR ILE THR ILE ALA GLU GLN ASP ASN ALA SEQRES 4 B 230 GLU ALA ILE ILE ILE GLU LEU ASP THR PRO GLY GLY ARG SEQRES 5 B 230 ALA ASP ALA MET MET ASN ILE VAL GLN ARG ILE GLN GLN SEQRES 6 B 230 SER LYS ILE PRO VAL ILE ILE TYR VAL TYR PRO PRO GLY SEQRES 7 B 230 ALA SER ALA ALA SER ALA GLY THR TYR ILE ALA LEU GLY SEQRES 8 B 230 SER HIS LEU ILE ALA MET ALA PRO GLY THR SER ILE GLY SEQRES 9 B 230 ALA CYS ARG PRO ILE LEU GLY TYR SER GLN ASN GLY SER SEQRES 10 B 230 ILE ILE GLU ALA PRO PRO ALA ILE THR ASN TYR PHE ILE SEQRES 11 B 230 ALA TYR ILE LYS SER LEU ALA GLN GLU SER GLY ARG ASN SEQRES 12 B 230 ALA THR ILE ALA GLU GLU PHE ILE THR LYS ASP LEU SER SEQRES 13 B 230 LEU THR PRO GLU GLU ALA LEU LYS TYR GLY VAL ILE GLU SEQRES 14 B 230 VAL VAL ALA ARG ASP ILE ASN GLU LEU LEU LYS LYS SER SEQRES 15 B 230 ASN GLY MET LYS THR LYS ILE PRO VAL ASN GLY ARG TYR SEQRES 16 B 230 VAL THR LEU ASN PHE THR ASN VAL GLU VAL ARG TYR LEU SEQRES 17 B 230 ALA PRO SER PHE LYS ASP LYS LEU ILE SER TYR ILE THR SEQRES 18 B 230 ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 10 ASN VAL ILE VAL LEU MET LEU PRO MET GLU HET GOL A 301 6 HET IMD A 302 5 HET IMD A 303 5 HET CL A 304 1 HET GOL B 301 6 HET IMD B 302 5 HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 IMD 3(C3 H5 N2 1+) FORMUL 7 CL CL 1- FORMUL 10 HOH *140(H2 O) HELIX 1 1 THR A 34 ASP A 51 1 18 HELIX 2 2 ALA A 67 GLN A 79 1 13 HELIX 3 3 SER A 97 GLY A 105 1 9 HELIX 4 4 PRO A 136 SER A 154 1 19 HELIX 5 5 ASN A 157 LYS A 167 1 11 HELIX 6 6 THR A 172 TYR A 179 1 8 HELIX 7 7 ASP A 188 ASN A 197 1 10 HELIX 8 8 SER A 225 LEU A 237 1 13 HELIX 9 9 THR B 34 ASP B 51 1 18 HELIX 10 10 ALA B 67 SER B 80 1 14 HELIX 11 11 SER B 97 GLY B 105 1 9 HELIX 12 12 PRO B 136 SER B 154 1 19 HELIX 13 13 ASN B 157 LYS B 167 1 11 HELIX 14 14 THR B 172 TYR B 179 1 8 HELIX 15 15 ASP B 188 ASN B 197 1 10 HELIX 16 16 SER B 225 ASP B 236 1 12 SHEET 1 A 6 VAL A 184 VAL A 185 0 SHEET 2 A 6 LEU A 108 MET A 111 1 N MET A 111 O VAL A 184 SHEET 3 A 6 VAL A 84 VAL A 88 1 N ILE A 86 O ALA A 110 SHEET 4 A 6 ALA A 55 ASP A 61 1 N ILE A 58 O ILE A 85 SHEET 5 A 6 ILE A 23 LYS A 30 1 N TYR A 25 O ILE A 57 SHEET 6 A 6 GLU A 218 TYR A 221 1 O ARG A 220 N VAL A 24 SHEET 1 B 4 GLY A 65 ARG A 66 0 SHEET 2 B 4 VAL C 235 ILE C 236 1 O ILE C 236 N GLY A 65 SHEET 3 B 4 PRO A 122 TYR A 126 1 N ILE A 123 O VAL C 235 SHEET 4 B 4 ILE A 132 GLU A 134 -1 O ILE A 133 N GLY A 125 SHEET 1 C 3 SER A 94 ALA A 96 0 SHEET 2 C 3 SER A 116 GLY A 118 1 O SER A 116 N ALA A 95 SHEET 3 C 3 SER A 170 LEU A 171 -1 O LEU A 171 N ILE A 117 SHEET 1 D 6 VAL B 184 VAL B 185 0 SHEET 2 D 6 LEU B 108 MET B 111 1 N MET B 111 O VAL B 184 SHEET 3 D 6 VAL B 84 VAL B 88 1 N ILE B 86 O ALA B 110 SHEET 4 D 6 ALA B 55 ASP B 61 1 N ILE B 58 O TYR B 87 SHEET 5 D 6 ASN B 22 LYS B 30 1 N TYR B 25 O ILE B 57 SHEET 6 D 6 VAL B 217 TYR B 221 1 O ARG B 220 N VAL B 24 SHEET 1 E 2 GLY B 65 ARG B 66 0 SHEET 2 E 2 MET C 239 LEU C 240 -1 O LEU C 240 N GLY B 65 SHEET 1 F 3 SER B 94 ALA B 96 0 SHEET 2 F 3 SER B 116 GLY B 118 1 O SER B 116 N ALA B 95 SHEET 3 F 3 SER B 170 LEU B 171 -1 O LEU B 171 N ILE B 117 SHEET 1 G 2 ILE B 123 TYR B 126 0 SHEET 2 G 2 ILE B 132 GLU B 134 -1 O ILE B 133 N GLY B 125 CISPEP 1 TYR A 89 PRO A 90 0 2.75 CISPEP 2 TYR B 89 PRO B 90 0 0.87 SITE 1 AC1 7 GLU A 183 LYS A 202 ARG B 156 ASN B 157 SITE 2 AC1 7 ALA B 158 THR B 159 HOH B 434 SITE 1 AC2 6 ALA A 53 GLU A 54 LYS A 81 PRO A 83 SITE 2 AC2 6 ARG A 208 VAL A 210 SITE 1 AC3 3 GLN A 28 GLU A 59 LEU A 222 SITE 1 AC4 2 ARG A 208 THR A 211 SITE 1 AC5 8 ARG A 156 ALA A 158 THR A 159 LEU B 177 SITE 2 AC5 8 GLY B 180 ILE B 182 GLU B 183 LYS B 202 SITE 1 AC6 4 GLU B 54 LYS B 81 PRO B 83 VAL B 210 CRYST1 111.448 111.448 91.738 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010901 0.00000