data_3WGE # _entry.id 3WGE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3WGE RCSB RCSB096301 WWPDB D_1000096301 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3WGD _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WGE _pdbx_database_status.recvd_initial_deposition_date 2013-08-04 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inaba, K.' 1 'Suzuki, M.' 2 'Kojima, R.' 3 # _citation.id primary _citation.title 'Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 431 _citation.page_last 443 _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24462249 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.12.013 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kojima, R.' 1 primary 'Okumura, M.' 2 primary 'Masui, S.' 3 primary 'Kanemura, S.' 4 primary 'Inoue, M.' 5 primary 'Saiki, M.' 6 primary 'Yamaguchi, H.' 7 primary 'Hikima, T.' 8 primary 'Suzuki, M.' 9 primary 'Akiyama, S.' 10 primary 'Inaba, K.' 11 # _cell.entry_id 3WGE _cell.length_a 32.580 _cell.length_b 39.060 _cell.length_c 87.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WGE _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thioredoxin domain-containing protein 5' 13007.667 1 ? ? 'Trx2 domain, UNP residues 190-298' ? 2 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 3 water nat water 18.015 137 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'ERp46, Endoplasmic reticulum resident protein 46, ER protein 46, Thioredoxin-like protein p46' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTL LWFRDGKKVDQYKGKRDLESLREYVESQLQRTE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMGLYELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTL LWFRDGKKVDQYKGKRDLESLREYVESQLQRTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 GLY n 1 6 LEU n 1 7 TYR n 1 8 GLU n 1 9 LEU n 1 10 SER n 1 11 ALA n 1 12 SER n 1 13 ASN n 1 14 PHE n 1 15 GLU n 1 16 LEU n 1 17 HIS n 1 18 VAL n 1 19 ALA n 1 20 GLN n 1 21 GLY n 1 22 ASP n 1 23 HIS n 1 24 PHE n 1 25 ILE n 1 26 LYS n 1 27 PHE n 1 28 PHE n 1 29 ALA n 1 30 PRO n 1 31 TRP n 1 32 CYS n 1 33 GLY n 1 34 HIS n 1 35 CYS n 1 36 LYS n 1 37 ALA n 1 38 LEU n 1 39 ALA n 1 40 PRO n 1 41 THR n 1 42 TRP n 1 43 GLU n 1 44 GLN n 1 45 LEU n 1 46 ALA n 1 47 LEU n 1 48 GLY n 1 49 LEU n 1 50 GLU n 1 51 HIS n 1 52 SER n 1 53 GLU n 1 54 THR n 1 55 VAL n 1 56 LYS n 1 57 ILE n 1 58 GLY n 1 59 LYS n 1 60 VAL n 1 61 ASP n 1 62 CYS n 1 63 THR n 1 64 GLN n 1 65 HIS n 1 66 TYR n 1 67 GLU n 1 68 LEU n 1 69 CYS n 1 70 SER n 1 71 GLY n 1 72 ASN n 1 73 GLN n 1 74 VAL n 1 75 ARG n 1 76 GLY n 1 77 TYR n 1 78 PRO n 1 79 THR n 1 80 LEU n 1 81 LEU n 1 82 TRP n 1 83 PHE n 1 84 ARG n 1 85 ASP n 1 86 GLY n 1 87 LYS n 1 88 LYS n 1 89 VAL n 1 90 ASP n 1 91 GLN n 1 92 TYR n 1 93 LYS n 1 94 GLY n 1 95 LYS n 1 96 ARG n 1 97 ASP n 1 98 LEU n 1 99 GLU n 1 100 SER n 1 101 LEU n 1 102 ARG n 1 103 GLU n 1 104 TYR n 1 105 VAL n 1 106 GLU n 1 107 SER n 1 108 GLN n 1 109 LEU n 1 110 GLN n 1 111 ARG n 1 112 THR n 1 113 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TXNDC5 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'C41(DE3)RIPL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pOPTG _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TXND5_HUMAN _struct_ref.pdbx_db_accession Q8NBS9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GLYELSASNFELHVAQGDHFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFR DGKKVDQYKGKRDLESLREYVESQLQRTE ; _struct_ref.pdbx_align_begin 190 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3WGE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NBS9 _struct_ref_seq.db_align_beg 190 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 298 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 190 _struct_ref_seq.pdbx_auth_seq_align_end 298 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WGE GLY A 1 ? UNP Q8NBS9 ? ? 'EXPRESSION TAG' 186 1 1 3WGE SER A 2 ? UNP Q8NBS9 ? ? 'EXPRESSION TAG' 187 2 1 3WGE HIS A 3 ? UNP Q8NBS9 ? ? 'EXPRESSION TAG' 188 3 1 3WGE MET A 4 ? UNP Q8NBS9 ? ? 'EXPRESSION TAG' 189 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3WGE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_percent_sol 42.33 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '0.1M HEPES, 2.2M Ammonium sulfate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2012-07-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DIP-6040 Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.7 # _reflns.entry_id 3WGE _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.57 _reflns.d_resolution_high 0.95 _reflns.number_obs 70957 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 6.850 _reflns.pdbx_redundancy 7.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3WGE _refine.ls_number_reflns_obs 70878 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 12.476 _refine.ls_d_res_high 0.950 _refine.ls_percent_reflns_obs 99.89 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1228 _refine.ls_R_factor_R_work 0.1222 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1348 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.05 _refine.ls_number_reflns_R_free 3579 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.B_iso_mean 9.8302 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.06 _refine.overall_FOM_work_R_set 0.9475 _refine.B_iso_max 55.780 _refine.B_iso_min 1.900 _refine.pdbx_overall_phase_error 10.6000 _refine.occupancy_max 1.000 _refine.occupancy_min 0.030 _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 899 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1042 _refine_hist.d_res_high 0.950 _refine_hist.d_res_low 12.476 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1244 0.012 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1712 1.370 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 163 0.083 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 234 0.008 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 489 12.779 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 0.9500 0.9625 26 100.0000 2572 . 0.2189 0.2399 . 131 . 2703 . 'X-RAY DIFFRACTION' 0.9625 0.9757 26 100.0000 2550 . 0.1952 0.2168 . 128 . 2678 . 'X-RAY DIFFRACTION' 0.9757 0.9896 26 100.0000 2540 . 0.1843 0.2031 . 151 . 2691 . 'X-RAY DIFFRACTION' 0.9896 1.0044 26 100.0000 2572 . 0.1688 0.2085 . 125 . 2697 . 'X-RAY DIFFRACTION' 1.0044 1.0201 26 100.0000 2554 . 0.1555 0.1669 . 135 . 2689 . 'X-RAY DIFFRACTION' 1.0201 1.0368 26 100.0000 2561 . 0.1433 0.1525 . 124 . 2685 . 'X-RAY DIFFRACTION' 1.0368 1.0546 26 100.0000 2583 . 0.1325 0.1385 . 135 . 2718 . 'X-RAY DIFFRACTION' 1.0546 1.0738 26 100.0000 2521 . 0.1199 0.1457 . 163 . 2684 . 'X-RAY DIFFRACTION' 1.0738 1.0945 26 100.0000 2548 . 0.1057 0.1376 . 146 . 2694 . 'X-RAY DIFFRACTION' 1.0945 1.1168 26 100.0000 2581 . 0.0992 0.1068 . 137 . 2718 . 'X-RAY DIFFRACTION' 1.1168 1.1411 26 100.0000 2539 . 0.0939 0.1156 . 134 . 2673 . 'X-RAY DIFFRACTION' 1.1411 1.1676 26 100.0000 2579 . 0.0930 0.1191 . 156 . 2735 . 'X-RAY DIFFRACTION' 1.1676 1.1968 26 100.0000 2567 . 0.0934 0.1260 . 126 . 2693 . 'X-RAY DIFFRACTION' 1.1968 1.2291 26 100.0000 2603 . 0.0919 0.1024 . 120 . 2723 . 'X-RAY DIFFRACTION' 1.2291 1.2652 26 100.0000 2598 . 0.0953 0.1209 . 129 . 2727 . 'X-RAY DIFFRACTION' 1.2652 1.3060 26 100.0000 2599 . 0.0919 0.1080 . 125 . 2724 . 'X-RAY DIFFRACTION' 1.3060 1.3526 26 100.0000 2567 . 0.0954 0.1190 . 134 . 2701 . 'X-RAY DIFFRACTION' 1.3526 1.4067 26 100.0000 2598 . 0.0941 0.1256 . 135 . 2733 . 'X-RAY DIFFRACTION' 1.4067 1.4707 26 100.0000 2550 . 0.0959 0.1140 . 163 . 2713 . 'X-RAY DIFFRACTION' 1.4707 1.5481 26 100.0000 2600 . 0.0939 0.1124 . 156 . 2756 . 'X-RAY DIFFRACTION' 1.5481 1.6448 26 100.0000 2620 . 0.0937 0.1200 . 130 . 2750 . 'X-RAY DIFFRACTION' 1.6448 1.7715 26 100.0000 2612 . 0.1002 0.1241 . 132 . 2744 . 'X-RAY DIFFRACTION' 1.7715 1.9492 26 100.0000 2633 . 0.1068 0.1143 . 142 . 2775 . 'X-RAY DIFFRACTION' 1.9492 2.2298 26 100.0000 2632 . 0.1135 0.1302 . 148 . 2780 . 'X-RAY DIFFRACTION' 2.2298 2.8041 26 100.0000 2697 . 0.1380 0.1471 . 125 . 2822 . 'X-RAY DIFFRACTION' 2.8041 12.4767 26 97.0000 2723 . 0.1643 0.1471 . 149 . 2872 . 'X-RAY DIFFRACTION' # _struct.entry_id 3WGE _struct.title 'Crystal structure of ERp46 Trx2' _struct.pdbx_descriptor 'Thioredoxin domain-containing protein 5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WGE _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'PDI family member, thioredoxin domain, protein disulfide isomerase, ISOMERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 13 ? ALA A 19 ? ASN A 198 ALA A 204 1 ? 7 HELX_P HELX_P2 2 CYS A 32 ? LEU A 49 ? CYS A 217 LEU A 234 1 ? 18 HELX_P HELX_P3 3 HIS A 65 ? GLY A 71 ? HIS A 250 GLY A 256 1 ? 7 HELX_P HELX_P4 4 ASP A 97 ? GLN A 108 ? ASP A 282 GLN A 293 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 32 SG ? ? ? 1_555 A CYS 35 SG ? ? A CYS 217 A CYS 220 1_555 ? ? ? ? ? ? ? 2.280 ? disulf2 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 69 SG ? ? A CYS 247 A CYS 254 1_555 ? ? ? ? ? ? ? 2.041 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 77 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 262 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 78 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 263 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -14.07 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 6 ? GLU A 8 ? LEU A 191 GLU A 193 A 2 VAL A 55 ? ASP A 61 ? VAL A 240 ASP A 246 A 3 ASP A 22 ? PHE A 28 ? ASP A 207 PHE A 213 A 4 THR A 79 ? ARG A 84 ? THR A 264 ARG A 269 A 5 LYS A 87 ? TYR A 92 ? LYS A 272 TYR A 277 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 7 ? N TYR A 192 O ILE A 57 ? O ILE A 242 A 2 3 O VAL A 60 ? O VAL A 245 N PHE A 28 ? N PHE A 213 A 3 4 N PHE A 27 ? N PHE A 212 O THR A 79 ? O THR A 264 A 4 5 N TRP A 82 ? N TRP A 267 O VAL A 89 ? O VAL A 274 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE GOL A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 LEU A 6 ? LEU A 191 . ? 1_555 ? 2 AC1 9 TYR A 7 ? TYR A 192 . ? 1_555 ? 3 AC1 9 GLU A 8 ? GLU A 193 . ? 1_555 ? 4 AC1 9 GLN A 44 ? GLN A 229 . ? 4_465 ? 5 AC1 9 GLY A 48 ? GLY A 233 . ? 4_465 ? 6 AC1 9 ARG A 102 ? ARG A 287 . ? 4_465 ? 7 AC1 9 HOH C . ? HOH A 442 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 513 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 514 . ? 1_555 ? # _database_PDB_matrix.entry_id 3WGE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WGE _atom_sites.fract_transf_matrix[1][1] 0.030694 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 186 186 GLY GLY A . n A 1 2 SER 2 187 187 SER SER A . n A 1 3 HIS 3 188 188 HIS HIS A . n A 1 4 MET 4 189 189 MET MET A . n A 1 5 GLY 5 190 190 GLY GLY A . n A 1 6 LEU 6 191 191 LEU LEU A . n A 1 7 TYR 7 192 192 TYR TYR A . n A 1 8 GLU 8 193 193 GLU GLU A . n A 1 9 LEU 9 194 194 LEU LEU A . n A 1 10 SER 10 195 195 SER SER A . n A 1 11 ALA 11 196 196 ALA ALA A . n A 1 12 SER 12 197 197 SER SER A . n A 1 13 ASN 13 198 198 ASN ASN A . n A 1 14 PHE 14 199 199 PHE PHE A . n A 1 15 GLU 15 200 200 GLU GLU A . n A 1 16 LEU 16 201 201 LEU LEU A . n A 1 17 HIS 17 202 202 HIS HIS A . n A 1 18 VAL 18 203 203 VAL VAL A . n A 1 19 ALA 19 204 204 ALA ALA A . n A 1 20 GLN 20 205 205 GLN GLN A . n A 1 21 GLY 21 206 206 GLY GLY A . n A 1 22 ASP 22 207 207 ASP ASP A . n A 1 23 HIS 23 208 208 HIS HIS A . n A 1 24 PHE 24 209 209 PHE PHE A . n A 1 25 ILE 25 210 210 ILE ILE A . n A 1 26 LYS 26 211 211 LYS LYS A . n A 1 27 PHE 27 212 212 PHE PHE A . n A 1 28 PHE 28 213 213 PHE PHE A . n A 1 29 ALA 29 214 214 ALA ALA A . n A 1 30 PRO 30 215 215 PRO PRO A . n A 1 31 TRP 31 216 216 TRP TRP A . n A 1 32 CYS 32 217 217 CYS CYS A . n A 1 33 GLY 33 218 218 GLY GLY A . n A 1 34 HIS 34 219 219 HIS HIS A . n A 1 35 CYS 35 220 220 CYS CYS A . n A 1 36 LYS 36 221 221 LYS LYS A . n A 1 37 ALA 37 222 222 ALA ALA A . n A 1 38 LEU 38 223 223 LEU LEU A . n A 1 39 ALA 39 224 224 ALA ALA A . n A 1 40 PRO 40 225 225 PRO PRO A . n A 1 41 THR 41 226 226 THR THR A . n A 1 42 TRP 42 227 227 TRP TRP A . n A 1 43 GLU 43 228 228 GLU GLU A . n A 1 44 GLN 44 229 229 GLN GLN A . n A 1 45 LEU 45 230 230 LEU LEU A . n A 1 46 ALA 46 231 231 ALA ALA A . n A 1 47 LEU 47 232 232 LEU LEU A . n A 1 48 GLY 48 233 233 GLY GLY A . n A 1 49 LEU 49 234 234 LEU LEU A . n A 1 50 GLU 50 235 235 GLU GLU A . n A 1 51 HIS 51 236 236 HIS HIS A . n A 1 52 SER 52 237 237 SER SER A . n A 1 53 GLU 53 238 238 GLU GLU A . n A 1 54 THR 54 239 239 THR THR A . n A 1 55 VAL 55 240 240 VAL VAL A . n A 1 56 LYS 56 241 241 LYS LYS A . n A 1 57 ILE 57 242 242 ILE ILE A . n A 1 58 GLY 58 243 243 GLY GLY A . n A 1 59 LYS 59 244 244 LYS LYS A . n A 1 60 VAL 60 245 245 VAL VAL A . n A 1 61 ASP 61 246 246 ASP ASP A . n A 1 62 CYS 62 247 247 CYS CYS A . n A 1 63 THR 63 248 248 THR THR A . n A 1 64 GLN 64 249 249 GLN GLN A . n A 1 65 HIS 65 250 250 HIS HIS A . n A 1 66 TYR 66 251 251 TYR TYR A . n A 1 67 GLU 67 252 252 GLU GLU A . n A 1 68 LEU 68 253 253 LEU LEU A . n A 1 69 CYS 69 254 254 CYS CYS A . n A 1 70 SER 70 255 255 SER SER A . n A 1 71 GLY 71 256 256 GLY GLY A . n A 1 72 ASN 72 257 257 ASN ASN A . n A 1 73 GLN 73 258 258 GLN GLN A . n A 1 74 VAL 74 259 259 VAL VAL A . n A 1 75 ARG 75 260 260 ARG ARG A . n A 1 76 GLY 76 261 261 GLY GLY A . n A 1 77 TYR 77 262 262 TYR TYR A . n A 1 78 PRO 78 263 263 PRO PRO A . n A 1 79 THR 79 264 264 THR THR A . n A 1 80 LEU 80 265 265 LEU LEU A . n A 1 81 LEU 81 266 266 LEU LEU A . n A 1 82 TRP 82 267 267 TRP TRP A . n A 1 83 PHE 83 268 268 PHE PHE A . n A 1 84 ARG 84 269 269 ARG ARG A . n A 1 85 ASP 85 270 270 ASP ASP A . n A 1 86 GLY 86 271 271 GLY GLY A . n A 1 87 LYS 87 272 272 LYS LYS A . n A 1 88 LYS 88 273 273 LYS LYS A . n A 1 89 VAL 89 274 274 VAL VAL A . n A 1 90 ASP 90 275 275 ASP ASP A . n A 1 91 GLN 91 276 276 GLN GLN A . n A 1 92 TYR 92 277 277 TYR TYR A . n A 1 93 LYS 93 278 278 LYS LYS A . n A 1 94 GLY 94 279 279 GLY GLY A . n A 1 95 LYS 95 280 280 LYS LYS A . n A 1 96 ARG 96 281 281 ARG ARG A . n A 1 97 ASP 97 282 282 ASP ASP A . n A 1 98 LEU 98 283 283 LEU LEU A . n A 1 99 GLU 99 284 284 GLU GLU A . n A 1 100 SER 100 285 285 SER SER A . n A 1 101 LEU 101 286 286 LEU LEU A . n A 1 102 ARG 102 287 287 ARG ARG A . n A 1 103 GLU 103 288 288 GLU GLU A . n A 1 104 TYR 104 289 289 TYR TYR A . n A 1 105 VAL 105 290 290 VAL VAL A . n A 1 106 GLU 106 291 291 GLU GLU A . n A 1 107 SER 107 292 292 SER SER A . n A 1 108 GLN 108 293 293 GLN GLN A . n A 1 109 LEU 109 294 294 LEU LEU A . n A 1 110 GLN 110 295 295 GLN GLN A . n A 1 111 ARG 111 296 296 ARG ARG A . n A 1 112 THR 112 297 ? ? ? A . n A 1 113 GLU 113 298 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2014-06-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HO2 A GOL 301 ? ? O A HOH 514 ? ? 1.52 2 1 O A HOH 507 ? ? O A HOH 528 ? ? 2.10 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HE A ARG 260 ? B 1_555 O A HOH 438 ? ? 3_755 1.59 2 1 OE1 A GLN 229 ? B 1_555 O A HOH 513 ? ? 4_565 1.93 3 1 NE2 A GLN 229 ? C 1_555 O A HOH 510 ? ? 4_565 2.07 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 217 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 217 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 217 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.15 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 7.95 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 250 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -140.46 _pdbx_validate_torsion.psi 56.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 297 ? A THR 112 2 1 Y 1 A GLU 298 ? A GLU 113 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 301 3 GOL GOL A . C 3 HOH 1 401 1 HOH HOH A . C 3 HOH 2 402 2 HOH HOH A . C 3 HOH 3 403 3 HOH HOH A . C 3 HOH 4 404 4 HOH HOH A . C 3 HOH 5 405 5 HOH HOH A . C 3 HOH 6 406 6 HOH HOH A . C 3 HOH 7 407 7 HOH HOH A . C 3 HOH 8 408 8 HOH HOH A . C 3 HOH 9 409 9 HOH HOH A . C 3 HOH 10 410 10 HOH HOH A . C 3 HOH 11 411 11 HOH HOH A . C 3 HOH 12 412 12 HOH HOH A . C 3 HOH 13 413 13 HOH HOH A . C 3 HOH 14 414 14 HOH HOH A . C 3 HOH 15 415 15 HOH HOH A . C 3 HOH 16 416 16 HOH HOH A . C 3 HOH 17 417 17 HOH HOH A . C 3 HOH 18 418 18 HOH HOH A . C 3 HOH 19 419 19 HOH HOH A . C 3 HOH 20 420 20 HOH HOH A . C 3 HOH 21 421 21 HOH HOH A . C 3 HOH 22 422 22 HOH HOH A . C 3 HOH 23 423 23 HOH HOH A . C 3 HOH 24 424 24 HOH HOH A . C 3 HOH 25 425 25 HOH HOH A . C 3 HOH 26 426 26 HOH HOH A . C 3 HOH 27 427 27 HOH HOH A . C 3 HOH 28 428 28 HOH HOH A . C 3 HOH 29 429 29 HOH HOH A . C 3 HOH 30 430 30 HOH HOH A . C 3 HOH 31 431 31 HOH HOH A . C 3 HOH 32 432 32 HOH HOH A . C 3 HOH 33 433 33 HOH HOH A . C 3 HOH 34 434 34 HOH HOH A . C 3 HOH 35 435 35 HOH HOH A . C 3 HOH 36 436 36 HOH HOH A . C 3 HOH 37 437 37 HOH HOH A . C 3 HOH 38 438 38 HOH HOH A . C 3 HOH 39 439 39 HOH HOH A . C 3 HOH 40 440 40 HOH HOH A . C 3 HOH 41 441 41 HOH HOH A . C 3 HOH 42 442 42 HOH HOH A . C 3 HOH 43 443 43 HOH HOH A . C 3 HOH 44 444 44 HOH HOH A . C 3 HOH 45 445 45 HOH HOH A . C 3 HOH 46 446 46 HOH HOH A . C 3 HOH 47 447 47 HOH HOH A . C 3 HOH 48 448 48 HOH HOH A . C 3 HOH 49 449 49 HOH HOH A . C 3 HOH 50 450 50 HOH HOH A . C 3 HOH 51 451 51 HOH HOH A . C 3 HOH 52 452 52 HOH HOH A . C 3 HOH 53 453 53 HOH HOH A . C 3 HOH 54 454 54 HOH HOH A . C 3 HOH 55 455 55 HOH HOH A . C 3 HOH 56 456 56 HOH HOH A . C 3 HOH 57 457 57 HOH HOH A . C 3 HOH 58 458 58 HOH HOH A . C 3 HOH 59 459 59 HOH HOH A . C 3 HOH 60 460 60 HOH HOH A . C 3 HOH 61 461 61 HOH HOH A . C 3 HOH 62 462 62 HOH HOH A . C 3 HOH 63 463 63 HOH HOH A . C 3 HOH 64 464 64 HOH HOH A . C 3 HOH 65 465 65 HOH HOH A . C 3 HOH 66 466 66 HOH HOH A . C 3 HOH 67 467 67 HOH HOH A . C 3 HOH 68 468 68 HOH HOH A . C 3 HOH 69 469 69 HOH HOH A . C 3 HOH 70 470 70 HOH HOH A . C 3 HOH 71 471 71 HOH HOH A . C 3 HOH 72 472 72 HOH HOH A . C 3 HOH 73 473 73 HOH HOH A . C 3 HOH 74 474 74 HOH HOH A . C 3 HOH 75 475 75 HOH HOH A . C 3 HOH 76 476 76 HOH HOH A . C 3 HOH 77 477 77 HOH HOH A . C 3 HOH 78 478 78 HOH HOH A . C 3 HOH 79 479 79 HOH HOH A . C 3 HOH 80 480 80 HOH HOH A . C 3 HOH 81 481 81 HOH HOH A . C 3 HOH 82 482 82 HOH HOH A . C 3 HOH 83 483 83 HOH HOH A . C 3 HOH 84 484 84 HOH HOH A . C 3 HOH 85 485 85 HOH HOH A . C 3 HOH 86 486 86 HOH HOH A . C 3 HOH 87 487 87 HOH HOH A . C 3 HOH 88 488 88 HOH HOH A . C 3 HOH 89 489 89 HOH HOH A . C 3 HOH 90 490 90 HOH HOH A . C 3 HOH 91 491 91 HOH HOH A . C 3 HOH 92 492 92 HOH HOH A . C 3 HOH 93 493 93 HOH HOH A . C 3 HOH 94 494 94 HOH HOH A . C 3 HOH 95 495 95 HOH HOH A . C 3 HOH 96 496 96 HOH HOH A . C 3 HOH 97 497 97 HOH HOH A . C 3 HOH 98 498 98 HOH HOH A . C 3 HOH 99 499 99 HOH HOH A . C 3 HOH 100 500 100 HOH HOH A . C 3 HOH 101 501 101 HOH HOH A . C 3 HOH 102 502 102 HOH HOH A . C 3 HOH 103 503 103 HOH HOH A . C 3 HOH 104 504 104 HOH HOH A . C 3 HOH 105 505 105 HOH HOH A . C 3 HOH 106 506 106 HOH HOH A . C 3 HOH 107 507 107 HOH HOH A . C 3 HOH 108 508 108 HOH HOH A . C 3 HOH 109 509 109 HOH HOH A . C 3 HOH 110 510 110 HOH HOH A . C 3 HOH 111 511 111 HOH HOH A . C 3 HOH 112 512 112 HOH HOH A . C 3 HOH 113 513 113 HOH HOH A . C 3 HOH 114 514 114 HOH HOH A . C 3 HOH 115 515 115 HOH HOH A . C 3 HOH 116 516 116 HOH HOH A . C 3 HOH 117 517 117 HOH HOH A . C 3 HOH 118 518 118 HOH HOH A . C 3 HOH 119 519 119 HOH HOH A . C 3 HOH 120 520 120 HOH HOH A . C 3 HOH 121 521 121 HOH HOH A . C 3 HOH 122 522 122 HOH HOH A . C 3 HOH 123 523 123 HOH HOH A . C 3 HOH 124 524 124 HOH HOH A . C 3 HOH 125 525 125 HOH HOH A . C 3 HOH 126 526 126 HOH HOH A . C 3 HOH 127 527 127 HOH HOH A . C 3 HOH 128 528 128 HOH HOH A . C 3 HOH 129 529 129 HOH HOH A . C 3 HOH 130 530 130 HOH HOH A . C 3 HOH 131 531 131 HOH HOH A . C 3 HOH 132 532 132 HOH HOH A . C 3 HOH 133 533 133 HOH HOH A . C 3 HOH 134 534 134 HOH HOH A . C 3 HOH 135 535 135 HOH HOH A . C 3 HOH 136 536 136 HOH HOH A . C 3 HOH 137 537 137 HOH HOH A . #