HEADER TRANSCRIPTION 05-AUG-13 3WGG TITLE CRYSTAL STRUCTURE OF RSP IN COMPLEX WITH ALPHA-NAD+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RSP REPRESSOR; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER ETHANOLICUS; SOURCE 3 ORGANISM_TAXID: 509192; SOURCE 4 STRAIN: JW200; SOURCE 5 GENE: REX, RSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS WINGED HELIX, ROSSMANN FOLD, TRANSCRIPTION REPRESSOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHENG,T.-P.KO,R.-T.GUO REVDAT 3 08-NOV-23 3WGG 1 REMARK REVDAT 2 28-JAN-15 3WGG 1 JRNL REVDAT 1 13-AUG-14 3WGG 0 JRNL AUTH Y.ZHENG,T.-P.KO,Y.YANG,W.SHAO,R.-T.GUO JRNL TITL BINDING MODE OF THE OXIDIZED ALPHA-ANOMER OF NAD(+) TO RSP, JRNL TITL 2 A REX-FAMILY REPRESSOR JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 456 733 2015 JRNL REFN ISSN 0006-291X JRNL PMID 25527330 JRNL DOI 10.1016/J.BBRC.2014.12.049 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1596 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -1.45000 REMARK 3 B33 (A**2) : 1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4878 ; 1.818 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 6.954 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;41.597 ;24.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;18.218 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2640 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2108 ; 1.400 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3410 ; 2.447 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 3.633 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1468 ; 5.613 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 5 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 56 A 64 5 REMARK 3 1 B 56 B 64 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 36 ; 0.38 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 32 ; 0.88 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 36 ; 1.98 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 32 ; 1.87 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 210 A 216 5 REMARK 3 1 B 210 B 216 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 28 ; 0.42 ; 0.50 REMARK 3 LOOSE POSITIONAL 2 A (A): 35 ; 1.25 ; 5.00 REMARK 3 MEDIUM THERMAL 2 A (A**2): 28 ; 3.23 ; 2.00 REMARK 3 LOOSE THERMAL 2 A (A**2): 35 ; 2.52 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 155 A 160 5 REMARK 3 1 B 155 B 160 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 24 ; 0.13 ; 0.50 REMARK 3 LOOSE POSITIONAL 3 A (A): 22 ; 0.91 ; 5.00 REMARK 3 MEDIUM THERMAL 3 A (A**2): 24 ; 4.83 ; 2.00 REMARK 3 LOOSE THERMAL 3 A (A**2): 22 ; 3.89 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 26 A 30 5 REMARK 3 1 B 26 B 30 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 20 ; 0.09 ; 0.50 REMARK 3 LOOSE POSITIONAL 4 A (A): 20 ; 0.49 ; 5.00 REMARK 3 MEDIUM THERMAL 4 A (A**2): 20 ; 1.48 ; 2.00 REMARK 3 LOOSE THERMAL 4 A (A**2): 20 ; 1.47 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 216 6 REMARK 3 1 B 4 B 216 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 5 A (A): 1715 ; 0.65 ; 5.00 REMARK 3 LOOSE THERMAL 5 A (A**2): 1715 ; 5.70 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9680 13.7357 9.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.0207 T22: 0.0601 REMARK 3 T33: 0.1342 T12: 0.0049 REMARK 3 T13: 0.0164 T23: -0.0508 REMARK 3 L TENSOR REMARK 3 L11: 0.0996 L22: 0.5759 REMARK 3 L33: 0.4733 L12: -0.0725 REMARK 3 L13: 0.1433 L23: 0.0798 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0635 S13: -0.0914 REMARK 3 S21: 0.1044 S22: 0.0309 S23: 0.1320 REMARK 3 S31: -0.0061 S32: 0.1052 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 216 REMARK 3 ORIGIN FOR THE GROUP (A): 23.4757 23.6022 21.0583 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0573 REMARK 3 T33: 0.0473 T12: 0.0151 REMARK 3 T13: 0.0001 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.5270 L22: 0.7893 REMARK 3 L33: 0.0642 L12: -0.2135 REMARK 3 L13: -0.0129 L23: -0.1974 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.0328 S13: -0.0501 REMARK 3 S21: 0.0769 S22: 0.0590 S23: 0.0642 REMARK 3 S31: -0.0352 S32: -0.0066 S33: -0.0154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 3WG9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.4M AMMONIUM REMARK 280 SULFATE, 0.1M BIS-TRIS, PLUS 5MM ALPHA-NAD+, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 69.90800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.06850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.90800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.06850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 437 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 475 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 THR A 219 REMARK 465 ALA A 220 REMARK 465 LYS A 221 REMARK 465 ILE A 222 REMARK 465 ASP A 223 REMARK 465 GLY A 224 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 GLY B 217 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 ALA B 220 REMARK 465 LYS B 221 REMARK 465 ILE B 222 REMARK 465 ASP B 223 REMARK 465 GLY B 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 461 O HOH A 462 1.95 REMARK 500 O PHE B 110 O HOH B 603 2.01 REMARK 500 O HOH A 430 O HOH A 431 2.02 REMARK 500 O HOH A 477 O HOH A 598 2.04 REMARK 500 O HOH A 428 O HOH A 584 2.10 REMARK 500 O HOH B 494 O HOH B 562 2.12 REMARK 500 OE2 GLU B 69 O HOH B 558 2.13 REMARK 500 O HOH B 510 O HOH B 511 2.15 REMARK 500 O HOH A 519 O HOH A 571 2.17 REMARK 500 O HOH B 447 O HOH B 532 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 61 146.92 178.56 REMARK 500 GLN A 62 92.71 3.10 REMARK 500 ARG A 128 -121.44 46.70 REMARK 500 ASN A 158 21.26 -144.34 REMARK 500 ASP B 29 55.11 28.36 REMARK 500 GLN B 62 106.24 0.88 REMARK 500 TYR B 64 -8.38 -149.25 REMARK 500 ARG B 128 -109.21 37.41 REMARK 500 LYS B 214 -72.91 -48.80 REMARK 500 LEU B 215 -95.44 -63.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WG9 RELATED DB: PDB REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 3WGH RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BETA-NADH REMARK 900 RELATED ID: 3WGI RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH BETA-NAD+ AND OPERATOR DNA DBREF 3WGG A 1 224 UNP D5KM69 D5KM69_THEET 1 224 DBREF 3WGG B 1 224 UNP D5KM69 D5KM69_THEET 1 224 SEQRES 1 A 224 MET SER LYS LYS THR ILE VAL SER MET ALA VAL ILE ARG SEQRES 2 A 224 ARG LEU PRO ARG TYR HIS ARG TYR LEU GLU GLU LEU LEU SEQRES 3 A 224 LYS ASN ASP VAL LYS ARG ILE SER SER ARG GLU LEU SER SEQRES 4 A 224 GLU LYS MET GLY VAL THR ALA SER GLN ILE ARG GLN ASP SEQRES 5 A 224 LEU ASN ASN PHE GLY GLY PHE GLY GLN GLN GLY TYR GLY SEQRES 6 A 224 TYR ASN VAL GLU GLU LEU TYR ASN ASN LEU THR LYS ILE SEQRES 7 A 224 LEU GLY LEU ASP LYS THR TYR ASN THR ILE ILE ILE GLY SEQRES 8 A 224 ALA GLY ASN LEU GLY GLN ALA ILE ALA ASN TYR THR SER SEQRES 9 A 224 PHE GLU LYS SER GLY PHE ASN LEU LYS GLY ILE PHE ASP SEQRES 10 A 224 ILE ASN PRO ARG LEU PHE GLY LEU LYS ILE ARG ASP VAL SEQRES 11 A 224 GLU VAL MET ASP VAL GLU THR VAL GLU ASP PHE ILE ALA SEQRES 12 A 224 ARG ASN LYS ILE ASP ILE GLY ILE LEU CYS ILE PRO LYS SEQRES 13 A 224 ASP ASN ALA GLN TYR THR ALA ASP ARG LEU VAL ARG ALA SEQRES 14 A 224 GLY ILE LYS ALA ILE TRP ASN PHE LEU PRO ILE ASP LEU SEQRES 15 A 224 LYS VAL PRO ASP ASP VAL ILE LEU GLU ASN VAL HIS LEU SEQRES 16 A 224 SER ASP SER LEU PHE THR VAL SER TYR ARG LEU ASN GLU SEQRES 17 A 224 GLU GLU LEU PHE LYS LYS LEU LYS GLY GLU THR ALA LYS SEQRES 18 A 224 ILE ASP GLY SEQRES 1 B 224 MET SER LYS LYS THR ILE VAL SER MET ALA VAL ILE ARG SEQRES 2 B 224 ARG LEU PRO ARG TYR HIS ARG TYR LEU GLU GLU LEU LEU SEQRES 3 B 224 LYS ASN ASP VAL LYS ARG ILE SER SER ARG GLU LEU SER SEQRES 4 B 224 GLU LYS MET GLY VAL THR ALA SER GLN ILE ARG GLN ASP SEQRES 5 B 224 LEU ASN ASN PHE GLY GLY PHE GLY GLN GLN GLY TYR GLY SEQRES 6 B 224 TYR ASN VAL GLU GLU LEU TYR ASN ASN LEU THR LYS ILE SEQRES 7 B 224 LEU GLY LEU ASP LYS THR TYR ASN THR ILE ILE ILE GLY SEQRES 8 B 224 ALA GLY ASN LEU GLY GLN ALA ILE ALA ASN TYR THR SER SEQRES 9 B 224 PHE GLU LYS SER GLY PHE ASN LEU LYS GLY ILE PHE ASP SEQRES 10 B 224 ILE ASN PRO ARG LEU PHE GLY LEU LYS ILE ARG ASP VAL SEQRES 11 B 224 GLU VAL MET ASP VAL GLU THR VAL GLU ASP PHE ILE ALA SEQRES 12 B 224 ARG ASN LYS ILE ASP ILE GLY ILE LEU CYS ILE PRO LYS SEQRES 13 B 224 ASP ASN ALA GLN TYR THR ALA ASP ARG LEU VAL ARG ALA SEQRES 14 B 224 GLY ILE LYS ALA ILE TRP ASN PHE LEU PRO ILE ASP LEU SEQRES 15 B 224 LYS VAL PRO ASP ASP VAL ILE LEU GLU ASN VAL HIS LEU SEQRES 16 B 224 SER ASP SER LEU PHE THR VAL SER TYR ARG LEU ASN GLU SEQRES 17 B 224 GLU GLU LEU PHE LYS LYS LEU LYS GLY GLU THR ALA LYS SEQRES 18 B 224 ILE ASP GLY HET 8NA A 301 44 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET 8NA B 301 44 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HETNAM 8NA ALPHA-DIPHOSPHOPYRIDINE NUCLEOTIDE HETNAM SO4 SULFATE ION HETSYN 8NA ALPHA-NAD FORMUL 3 8NA 2(C21 H27 N7 O14 P2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *418(H2 O) HELIX 1 1 SER A 8 ASN A 28 1 21 HELIX 2 2 SER A 34 GLY A 43 1 10 HELIX 3 3 THR A 45 ASN A 55 1 11 HELIX 4 4 VAL A 68 LEU A 79 1 12 HELIX 5 5 GLY A 93 ASN A 101 1 9 HELIX 6 6 THR A 103 SER A 108 1 6 HELIX 7 7 ASN A 119 PHE A 123 5 5 HELIX 8 8 THR A 137 ASN A 145 1 9 HELIX 9 9 PRO A 155 ASP A 157 5 3 HELIX 10 10 ASN A 158 ALA A 169 1 12 HELIX 11 11 LEU A 195 LYS A 216 1 22 HELIX 12 12 SER B 8 ASN B 28 1 21 HELIX 13 13 SER B 34 GLY B 43 1 10 HELIX 14 14 THR B 45 ASN B 55 1 11 HELIX 15 15 VAL B 68 LEU B 79 1 12 HELIX 16 16 GLY B 93 ASN B 101 1 9 HELIX 17 17 THR B 103 SER B 108 1 6 HELIX 18 18 ASN B 119 PHE B 123 5 5 HELIX 19 19 THR B 137 ASN B 145 1 9 HELIX 20 20 PRO B 155 ASP B 157 5 3 HELIX 21 21 ASN B 158 ALA B 169 1 12 HELIX 22 22 LEU B 195 LEU B 215 1 21 SHEET 1 A 2 ARG A 32 ILE A 33 0 SHEET 2 A 2 TYR A 66 ASN A 67 -1 O TYR A 66 N ILE A 33 SHEET 1 B 7 LYS A 126 ILE A 127 0 SHEET 2 B 7 VAL A 130 ASP A 134 -1 O VAL A 130 N ILE A 127 SHEET 3 B 7 PHE A 110 ASP A 117 1 N ILE A 115 O MET A 133 SHEET 4 B 7 TYR A 85 ILE A 90 1 N THR A 87 O LYS A 113 SHEET 5 B 7 ILE A 149 LEU A 152 1 O ILE A 151 N ILE A 90 SHEET 6 B 7 ALA A 173 ASN A 176 1 O TRP A 175 N GLY A 150 SHEET 7 B 7 ILE A 189 ASN A 192 1 O ILE A 189 N ILE A 174 SHEET 1 C 2 ARG B 32 ILE B 33 0 SHEET 2 C 2 TYR B 66 ASN B 67 -1 O TYR B 66 N ILE B 33 SHEET 1 D 7 LYS B 126 ILE B 127 0 SHEET 2 D 7 VAL B 130 ASP B 134 -1 O VAL B 130 N ILE B 127 SHEET 3 D 7 PHE B 110 ASP B 117 1 N ILE B 115 O MET B 133 SHEET 4 D 7 TYR B 85 ILE B 90 1 N TYR B 85 O ASN B 111 SHEET 5 D 7 ILE B 149 LEU B 152 1 O ILE B 151 N ILE B 90 SHEET 6 D 7 ALA B 173 ASN B 176 1 O TRP B 175 N LEU B 152 SHEET 7 D 7 ILE B 189 ASN B 192 1 O GLU B 191 N ASN B 176 SITE 1 AC1 25 ILE A 90 GLY A 93 ASN A 94 LEU A 95 SITE 2 AC1 25 ASP A 117 ILE A 118 ASN A 119 CYS A 153 SITE 3 AC1 25 ILE A 154 PRO A 155 ASN A 158 THR A 162 SITE 4 AC1 25 PHE A 177 PRO A 179 SO4 A 303 HOH A 427 SITE 5 AC1 25 HOH A 498 HOH A 530 HOH A 542 HOH A 547 SITE 6 AC1 25 HOH A 559 ASN B 101 TYR B 102 THR B 103 SITE 7 AC1 25 SER B 104 SITE 1 AC2 6 ARG A 17 ARG A 20 TYR A 21 HOH A 410 SITE 2 AC2 6 ASN B 192 HIS B 194 SITE 1 AC3 7 PRO A 179 HIS A 194 LEU A 195 SER A 196 SITE 2 AC3 7 8NA A 301 HOH A 408 TYR B 102 SITE 1 AC4 8 SER A 34 SER A 35 GLN A 61 GLY A 63 SITE 2 AC4 8 TYR A 64 GLY A 65 HOH A 520 HOH A 521 SITE 1 AC5 27 GLN A 61 ASN A 101 TYR A 102 THR A 103 SITE 2 AC5 27 SER A 104 HOH A 418 ILE B 90 GLY B 93 SITE 3 AC5 27 ASN B 94 LEU B 95 ASP B 117 ILE B 118 SITE 4 AC5 27 ASN B 119 LEU B 122 CYS B 153 ILE B 154 SITE 5 AC5 27 PRO B 155 PHE B 177 PRO B 179 SO4 B 302 SITE 6 AC5 27 HOH B 451 HOH B 453 HOH B 454 HOH B 455 SITE 7 AC5 27 HOH B 456 HOH B 464 HOH B 538 SITE 1 AC6 8 TYR A 102 HIS B 194 LEU B 195 SER B 196 SITE 2 AC6 8 8NA B 301 HOH B 449 HOH B 483 HOH B 617 SITE 1 AC7 9 SER B 34 SER B 35 ARG B 36 ARG B 50 SITE 2 AC7 9 GLY B 65 PRO B 185 HOH B 411 HOH B 559 SITE 3 AC7 9 HOH B 594 SITE 1 AC8 4 HIS A 194 ARG B 20 HOH B 413 HOH B 466 CRYST1 139.816 74.137 54.764 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018260 0.00000