HEADER DNA BINDING PROTEIN/INHIBITOR 12-AUG-13 3WGW TITLE STRUCTURE OF PCNA BOUND TO A SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PCNA, CYCLIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PCNA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DNA BINDING, DNA BINDING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO REVDAT 3 08-NOV-23 3WGW 1 REMARK REVDAT 2 25-DEC-19 3WGW 1 JRNL REVDAT 1 05-FEB-14 3WGW 0 JRNL AUTH A.INOUE,S.KIKUCHI,A.HISHIKI,Y.SHAO,R.HEATH,B.J.EVISON, JRNL AUTH 2 M.ACTIS,C.E.CANMAN,H.HASHIMOTO,N.FUJII JRNL TITL A SMALL MOLECULE INHIBITOR OF MONOUBIQUITINATED JRNL TITL 2 PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) INHIBITS REPAIR OF JRNL TITL 3 INTERSTRAND DNA CROSS-LINK, ENHANCES DNA DOUBLE STRAND JRNL TITL 4 BREAK, AND SENSITIZES CANCER CELLS TO CISPLATIN. JRNL REF J.BIOL.CHEM. V. 289 7109 2014 JRNL REFN ESSN 1083-351X JRNL PMID 24474685 JRNL DOI 10.1074/JBC.M113.520429 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 28719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.4380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3944 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5328 ; 2.419 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 8.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;47.095 ;25.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;20.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 255 REMARK 3 ORIGIN FOR THE GROUP (A): -41.6261 -19.3673 43.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.0568 REMARK 3 T33: 0.0517 T12: 0.0061 REMARK 3 T13: 0.0170 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.7486 L22: 0.4212 REMARK 3 L33: 1.1410 L12: -0.3599 REMARK 3 L13: -0.8563 L23: 0.4444 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: -0.0450 S13: -0.0265 REMARK 3 S21: -0.0163 S22: -0.0023 S23: 0.0029 REMARK 3 S31: -0.0351 S32: 0.0389 S33: 0.0564 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 255 REMARK 3 ORIGIN FOR THE GROUP (A): -43.4951 18.4042 50.9822 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0646 REMARK 3 T33: 0.0518 T12: 0.0253 REMARK 3 T13: -0.0468 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5302 L22: 0.4474 REMARK 3 L33: 1.5559 L12: 0.0626 REMARK 3 L13: 1.4792 L23: 0.2967 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0704 S13: -0.0537 REMARK 3 S21: -0.0013 S22: 0.0032 S23: 0.0940 REMARK 3 S31: -0.0024 S32: 0.0739 S33: -0.0006 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096319. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3VKX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.08650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 96.08650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.08650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 96.08650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 96.08650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 96.08650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 96.08650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 96.08650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 96.08650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 96.08650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 96.08650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 96.08650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 96.08650 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 144.12975 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 48.04325 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 144.12975 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 144.12975 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 144.12975 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 48.04325 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 144.12975 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.04325 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 144.12975 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 48.04325 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 144.12975 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 48.04325 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 48.04325 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 144.12975 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 48.04325 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 144.12975 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 144.12975 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 144.12975 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 48.04325 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 144.12975 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 144.12975 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 48.04325 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 48.04325 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 48.04325 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 144.12975 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 48.04325 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 144.12975 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 48.04325 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 144.12975 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 144.12975 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 144.12975 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -96.08650 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -96.08650 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -96.08650 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 96.08650 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 96.08650 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 96.08650 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -96.08650 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 96.08650 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 186 REMARK 465 ASN A 187 REMARK 465 VAL A 188 REMARK 465 ASP A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 191 REMARK 465 GLU A 192 REMARK 465 GLU A 256 REMARK 465 ASP A 257 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 SER A 261 REMARK 465 ASN B 187 REMARK 465 VAL B 188 REMARK 465 ASP B 189 REMARK 465 LYS B 190 REMARK 465 GLU B 191 REMARK 465 GLU B 192 REMARK 465 GLU B 256 REMARK 465 ASP B 257 REMARK 465 GLU B 258 REMARK 465 GLU B 259 REMARK 465 GLY B 260 REMARK 465 SER B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 44 CG HIS A 44 CD2 0.060 REMARK 500 HIS A 153 CG HIS A 153 CD2 0.061 REMARK 500 HIS A 246 CG HIS A 246 CD2 0.056 REMARK 500 HIS B 153 CG HIS B 153 CD2 0.066 REMARK 500 HIS B 246 CG HIS B 246 CD2 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 12 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = -21.6 DEGREES REMARK 500 PRO A 106 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 CYS A 162 CA - CB - SG ANGL. DEV. = -13.1 DEGREES REMARK 500 LEU A 175 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO B 106 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 LEU B 235 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 45 -62.75 -104.23 REMARK 500 SER A 54 -59.61 -16.38 REMARK 500 ASN A 107 75.09 -57.21 REMARK 500 GLN A 108 53.17 -53.02 REMARK 500 GLU A 124 109.89 -19.72 REMARK 500 ASN A 200 -72.07 -110.48 REMARK 500 MET A 244 -42.99 -162.18 REMARK 500 SER B 42 36.40 -61.46 REMARK 500 SER B 43 7.82 -171.54 REMARK 500 PRO B 106 -81.34 -30.16 REMARK 500 ASN B 107 82.63 -49.45 REMARK 500 GLN B 108 41.21 -51.07 REMARK 500 GLU B 109 23.15 -141.25 REMARK 500 GLU B 124 96.62 -65.07 REMARK 500 CYS B 135 111.69 -175.61 REMARK 500 ASN B 200 -104.97 -111.70 REMARK 500 ASP B 232 -16.08 70.07 REMARK 500 MET B 244 -44.51 -165.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 254 ILE A 255 144.80 REMARK 500 GLU B 193 ALA B 194 -132.67 REMARK 500 ILE B 241 ALA B 242 -149.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B B 302 DBREF 3WGW A 1 261 UNP P12004 PCNA_HUMAN 1 261 DBREF 3WGW B 1 261 UNP P12004 PCNA_HUMAN 1 261 SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 A 261 SER SEQRES 1 B 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS SEQRES 2 B 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA SEQRES 3 B 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER SEQRES 4 B 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU SEQRES 5 B 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN SEQRES 6 B 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE SEQRES 7 B 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG SEQRES 8 B 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU SEQRES 9 B 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS SEQRES 10 B 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU SEQRES 11 B 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU SEQRES 12 B 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP SEQRES 13 B 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE SEQRES 14 B 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU SEQRES 15 B 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL SEQRES 16 B 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA SEQRES 17 B 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU SEQRES 18 B 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO SEQRES 19 B 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU SEQRES 20 B 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY SEQRES 21 B 261 SER HET T2B A 301 21 HET SO4 A 302 5 HET T2B A 303 21 HET SO4 B 301 5 HET T2B B 302 21 HETNAM T2B 4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL]-2,6- HETNAM 2 T2B DIIODOPHENOXY}PHENOL HETNAM SO4 SULFATE ION FORMUL 3 T2B 3(C15 H15 I2 N O3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 8 HOH *126(H2 O) HELIX 1 1 GLY A 9 ASP A 21 1 13 HELIX 2 2 GLU A 55 PHE A 57 5 3 HELIX 3 3 LEU A 72 LYS A 80 1 9 HELIX 4 4 SER A 141 HIS A 153 1 13 HELIX 5 5 LEU A 209 THR A 216 1 8 HELIX 6 6 LYS A 217 SER A 222 5 6 HELIX 7 7 GLY B 9 ASP B 21 1 13 HELIX 8 8 GLU B 55 PHE B 57 5 3 HELIX 9 9 LEU B 72 CYS B 81 1 10 HELIX 10 10 SER B 141 HIS B 153 1 13 HELIX 11 11 LEU B 209 THR B 216 1 8 HELIX 12 12 LYS B 217 SER B 222 5 6 SHEET 1 A 5 THR A 59 CYS A 62 0 SHEET 2 A 5 PHE A 2 LEU A 6 -1 N GLU A 3 O ARG A 61 SHEET 3 A 5 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6 SHEET 4 A 5 THR A 98 GLU A 104 -1 O GLU A 104 N ILE A 87 SHEET 5 A 5 VAL A 111 LYS A 117 -1 O SER A 112 N PHE A 103 SHEET 1 B 9 LEU A 66 ASN A 71 0 SHEET 2 B 9 GLU A 25 SER A 31 -1 N ALA A 26 O VAL A 70 SHEET 3 B 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29 SHEET 4 B 9 LEU A 47 ARG A 53 -1 O VAL A 48 N SER A 39 SHEET 5 B 9 GLY A 245 LEU A 251 -1 O HIS A 246 N THR A 51 SHEET 6 B 9 LEU A 235 ILE A 241 -1 N ILE A 241 O GLY A 245 SHEET 7 B 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238 SHEET 8 B 9 CYS A 135 PRO A 140 -1 N VAL A 137 O LEU A 227 SHEET 9 B 9 THR A 196 MET A 199 -1 O THR A 196 N LYS A 138 SHEET 1 C 4 ASN A 177 SER A 183 0 SHEET 2 C 4 GLY A 166 SER A 172 -1 N VAL A 167 O LEU A 182 SHEET 3 C 4 ALA A 157 CYS A 162 -1 N VAL A 159 O SER A 170 SHEET 4 C 4 VAL A 203 ALA A 208 -1 O LEU A 205 N ILE A 160 SHEET 1 D 5 THR B 59 CYS B 62 0 SHEET 2 D 5 PHE B 2 LEU B 6 -1 N ARG B 5 O THR B 59 SHEET 3 D 5 ILE B 87 ALA B 92 -1 O LEU B 90 N ALA B 4 SHEET 4 D 5 THR B 98 GLU B 104 -1 O ALA B 100 N ARG B 91 SHEET 5 D 5 VAL B 111 LYS B 117 -1 O TYR B 114 N LEU B 101 SHEET 1 E 9 LEU B 66 ASN B 71 0 SHEET 2 E 9 GLU B 25 SER B 31 -1 N ILE B 30 O LEU B 66 SHEET 3 E 9 GLY B 34 MET B 40 -1 O ASN B 36 N ASP B 29 SHEET 4 E 9 SER B 46 ARG B 53 -1 O VAL B 48 N SER B 39 SHEET 5 E 9 GLY B 245 LEU B 251 -1 O TYR B 250 N LEU B 47 SHEET 6 E 9 VAL B 233 ILE B 241 -1 N ILE B 241 O GLY B 245 SHEET 7 E 9 THR B 224 SER B 230 -1 N SER B 228 O VAL B 236 SHEET 8 E 9 CYS B 135 PRO B 140 -1 N VAL B 137 O LEU B 227 SHEET 9 E 9 THR B 196 MET B 199 -1 O THR B 196 N LYS B 138 SHEET 1 F 4 ASN B 177 SER B 183 0 SHEET 2 F 4 GLY B 166 SER B 172 -1 N VAL B 167 O LEU B 182 SHEET 3 F 4 ALA B 157 ALA B 163 -1 N SER B 161 O LYS B 168 SHEET 4 F 4 VAL B 203 ALA B 208 -1 O LEU B 205 N ILE B 160 SITE 1 AC1 10 MET A 40 HIS A 44 LEU A 47 GLU A 124 SITE 2 AC1 10 GLY A 127 PRO A 234 TYR A 250 HOH A 452 SITE 3 AC1 10 GLN B 131 VAL B 233 SITE 1 AC2 4 ARG A 53 LYS A 240 GLY A 245 HIS A 246 SITE 1 AC3 8 GLN A 108 GLU A 109 LYS A 181 LEU A 182 SITE 2 AC3 8 SER A 183 HOH A 462 ARG B 64 ASN B 95 SITE 1 AC4 4 ARG B 53 LYS B 240 GLY B 245 HIS B 246 SITE 1 AC5 9 ASP A 232 MET B 40 VAL B 45 LEU B 47 SITE 2 AC5 9 GLY B 127 PRO B 129 GLN B 131 PRO B 234 SITE 3 AC5 9 TYR B 250 CRYST1 192.173 192.173 192.173 90.00 90.00 90.00 P 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005204 0.00000