HEADER DNA BINDING PROTEIN/INHIBITOR 12-AUG-13 3WGW
TITLE STRUCTURE OF PCNA BOUND TO A SMALL MOLECULE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: PCNA, CYCLIN;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: PCNA;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS DNA BINDING, DNA BINDING PROTEIN-INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR H.HASHIMOTO
REVDAT 3 08-NOV-23 3WGW 1 REMARK
REVDAT 2 25-DEC-19 3WGW 1 JRNL
REVDAT 1 05-FEB-14 3WGW 0
JRNL AUTH A.INOUE,S.KIKUCHI,A.HISHIKI,Y.SHAO,R.HEATH,B.J.EVISON,
JRNL AUTH 2 M.ACTIS,C.E.CANMAN,H.HASHIMOTO,N.FUJII
JRNL TITL A SMALL MOLECULE INHIBITOR OF MONOUBIQUITINATED
JRNL TITL 2 PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) INHIBITS REPAIR OF
JRNL TITL 3 INTERSTRAND DNA CROSS-LINK, ENHANCES DNA DOUBLE STRAND
JRNL TITL 4 BREAK, AND SENSITIZES CANCER CELLS TO CISPLATIN.
JRNL REF J.BIOL.CHEM. V. 289 7109 2014
JRNL REFN ESSN 1083-351X
JRNL PMID 24474685
JRNL DOI 10.1074/JBC.M113.520429
REMARK 2
REMARK 2 RESOLUTION. 2.80 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.6.0117
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 3 NUMBER OF REFLECTIONS : 28719
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.184
REMARK 3 R VALUE (WORKING SET) : 0.182
REMARK 3 FREE R VALUE : 0.221
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1532
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1850
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95
REMARK 3 BIN R VALUE (WORKING SET) : 0.3530
REMARK 3 BIN FREE R VALUE SET COUNT : 102
REMARK 3 BIN FREE R VALUE : 0.4380
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3820
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 73
REMARK 3 SOLVENT ATOMS : 126
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.32
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.293
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.000
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3944 ; 0.020 ; 0.020
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5328 ; 2.419 ; 2.002
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 8.238 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;47.095 ;25.625
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 719 ;20.889 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.236 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.154 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2866 ; 0.009 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 255
REMARK 3 ORIGIN FOR THE GROUP (A): -41.6261 -19.3673 43.4000
REMARK 3 T TENSOR
REMARK 3 T11: 0.0895 T22: 0.0568
REMARK 3 T33: 0.0517 T12: 0.0061
REMARK 3 T13: 0.0170 T23: 0.0168
REMARK 3 L TENSOR
REMARK 3 L11: 0.7486 L22: 0.4212
REMARK 3 L33: 1.1410 L12: -0.3599
REMARK 3 L13: -0.8563 L23: 0.4444
REMARK 3 S TENSOR
REMARK 3 S11: -0.0542 S12: -0.0450 S13: -0.0265
REMARK 3 S21: -0.0163 S22: -0.0023 S23: 0.0029
REMARK 3 S31: -0.0351 S32: 0.0389 S33: 0.0564
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 1 B 255
REMARK 3 ORIGIN FOR THE GROUP (A): -43.4951 18.4042 50.9822
REMARK 3 T TENSOR
REMARK 3 T11: 0.0759 T22: 0.0646
REMARK 3 T33: 0.0518 T12: 0.0253
REMARK 3 T13: -0.0468 T23: -0.0134
REMARK 3 L TENSOR
REMARK 3 L11: 1.5302 L22: 0.4474
REMARK 3 L33: 1.5559 L12: 0.0626
REMARK 3 L13: 1.4792 L23: 0.2967
REMARK 3 S TENSOR
REMARK 3 S11: -0.0025 S12: 0.0704 S13: -0.0537
REMARK 3 S21: -0.0013 S22: 0.0032 S23: 0.0940
REMARK 3 S31: -0.0024 S32: 0.0739 S33: -0.0006
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN
REMARK 3 THE INPUT
REMARK 4
REMARK 4 3WGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-13.
REMARK 100 THE DEPOSITION ID IS D_1000096319.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12
REMARK 200 TEMPERATURE (KELVIN) : NULL
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PHOTON FACTORY
REMARK 200 BEAMLINE : AR-NE3A
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30376
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800
REMARK 200 RESOLUTION RANGE LOW (A) : 20.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : NULL
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: NULL
REMARK 200 STARTING MODEL: 3VKX
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 76.04
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.13
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290 5555 Z,X,Y
REMARK 290 6555 Z+1/2,-X+1/2,-Y
REMARK 290 7555 -Z+1/2,-X,Y+1/2
REMARK 290 8555 -Z,X+1/2,-Y+1/2
REMARK 290 9555 Y,Z,X
REMARK 290 10555 -Y,Z+1/2,-X+1/2
REMARK 290 11555 Y+1/2,-Z+1/2,-X
REMARK 290 12555 -Y+1/2,-Z,X+1/2
REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4
REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4
REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4
REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4
REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4
REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4
REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4
REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4
REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4
REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4
REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4
REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.08650
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 96.08650
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 96.08650
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 96.08650
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 96.08650
REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 96.08650
REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 96.08650
REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 96.08650
REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 96.08650
REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 96.08650
REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 96.08650
REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 96.08650
REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 96.08650
REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 144.12975
REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 48.04325
REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 144.12975
REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 144.12975
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 144.12975
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 48.04325
REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 144.12975
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 48.04325
REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 144.12975
REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 48.04325
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 144.12975
REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 48.04325
REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 48.04325
REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 144.12975
REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 48.04325
REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 144.12975
REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 144.12975
REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 144.12975
REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 48.04325
REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 144.12975
REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 144.12975
REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 48.04325
REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 48.04325
REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 48.04325
REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 144.12975
REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 48.04325
REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 144.12975
REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 48.04325
REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 144.12975
REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 144.12975
REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 144.12975
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -96.08650
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -96.08650
REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -96.08650
REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000
REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 96.08650
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 96.08650
REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 96.08650
REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -96.08650
REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 96.08650
REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 186
REMARK 465 ASN A 187
REMARK 465 VAL A 188
REMARK 465 ASP A 189
REMARK 465 LYS A 190
REMARK 465 GLU A 191
REMARK 465 GLU A 192
REMARK 465 GLU A 256
REMARK 465 ASP A 257
REMARK 465 GLU A 258
REMARK 465 GLU A 259
REMARK 465 GLY A 260
REMARK 465 SER A 261
REMARK 465 ASN B 187
REMARK 465 VAL B 188
REMARK 465 ASP B 189
REMARK 465 LYS B 190
REMARK 465 GLU B 191
REMARK 465 GLU B 192
REMARK 465 GLU B 256
REMARK 465 ASP B 257
REMARK 465 GLU B 258
REMARK 465 GLU B 259
REMARK 465 GLY B 260
REMARK 465 SER B 261
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 HIS A 44 CG HIS A 44 CD2 0.060
REMARK 500 HIS A 153 CG HIS A 153 CD2 0.061
REMARK 500 HIS A 246 CG HIS A 246 CD2 0.056
REMARK 500 HIS B 153 CG HIS B 153 CD2 0.066
REMARK 500 HIS B 246 CG HIS B 246 CD2 0.059
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU A 12 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES
REMARK 500 LEU A 16 CA - CB - CG ANGL. DEV. = -21.6 DEGREES
REMARK 500 PRO A 106 C - N - CA ANGL. DEV. = 9.2 DEGREES
REMARK 500 CYS A 162 CA - CB - SG ANGL. DEV. = -13.1 DEGREES
REMARK 500 LEU A 175 CA - CB - CG ANGL. DEV. = 15.5 DEGREES
REMARK 500 PRO B 106 C - N - CA ANGL. DEV. = 10.7 DEGREES
REMARK 500 LEU B 235 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 VAL A 45 -62.75 -104.23
REMARK 500 SER A 54 -59.61 -16.38
REMARK 500 ASN A 107 75.09 -57.21
REMARK 500 GLN A 108 53.17 -53.02
REMARK 500 GLU A 124 109.89 -19.72
REMARK 500 ASN A 200 -72.07 -110.48
REMARK 500 MET A 244 -42.99 -162.18
REMARK 500 SER B 42 36.40 -61.46
REMARK 500 SER B 43 7.82 -171.54
REMARK 500 PRO B 106 -81.34 -30.16
REMARK 500 ASN B 107 82.63 -49.45
REMARK 500 GLN B 108 41.21 -51.07
REMARK 500 GLU B 109 23.15 -141.25
REMARK 500 GLU B 124 96.62 -65.07
REMARK 500 CYS B 135 111.69 -175.61
REMARK 500 ASN B 200 -104.97 -111.70
REMARK 500 ASP B 232 -16.08 70.07
REMARK 500 MET B 244 -44.51 -165.75
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 LYS A 254 ILE A 255 144.80
REMARK 500 GLU B 193 ALA B 194 -132.67
REMARK 500 ILE B 241 ALA B 242 -149.78
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE T2B B 302
DBREF 3WGW A 1 261 UNP P12004 PCNA_HUMAN 1 261
DBREF 3WGW B 1 261 UNP P12004 PCNA_HUMAN 1 261
SEQRES 1 A 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS
SEQRES 2 A 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA
SEQRES 3 A 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER
SEQRES 4 A 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU
SEQRES 5 A 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN
SEQRES 6 A 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE
SEQRES 7 A 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG
SEQRES 8 A 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU
SEQRES 9 A 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS
SEQRES 10 A 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU
SEQRES 11 A 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU
SEQRES 12 A 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP
SEQRES 13 A 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE
SEQRES 14 A 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU
SEQRES 15 A 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL
SEQRES 16 A 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA
SEQRES 17 A 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU
SEQRES 18 A 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO
SEQRES 19 A 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU
SEQRES 20 A 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY
SEQRES 21 A 261 SER
SEQRES 1 B 261 MET PHE GLU ALA ARG LEU VAL GLN GLY SER ILE LEU LYS
SEQRES 2 B 261 LYS VAL LEU GLU ALA LEU LYS ASP LEU ILE ASN GLU ALA
SEQRES 3 B 261 CYS TRP ASP ILE SER SER SER GLY VAL ASN LEU GLN SER
SEQRES 4 B 261 MET ASP SER SER HIS VAL SER LEU VAL GLN LEU THR LEU
SEQRES 5 B 261 ARG SER GLU GLY PHE ASP THR TYR ARG CYS ASP ARG ASN
SEQRES 6 B 261 LEU ALA MET GLY VAL ASN LEU THR SER MET SER LYS ILE
SEQRES 7 B 261 LEU LYS CYS ALA GLY ASN GLU ASP ILE ILE THR LEU ARG
SEQRES 8 B 261 ALA GLU ASP ASN ALA ASP THR LEU ALA LEU VAL PHE GLU
SEQRES 9 B 261 ALA PRO ASN GLN GLU LYS VAL SER ASP TYR GLU MET LYS
SEQRES 10 B 261 LEU MET ASP LEU ASP VAL GLU GLN LEU GLY ILE PRO GLU
SEQRES 11 B 261 GLN GLU TYR SER CYS VAL VAL LYS MET PRO SER GLY GLU
SEQRES 12 B 261 PHE ALA ARG ILE CYS ARG ASP LEU SER HIS ILE GLY ASP
SEQRES 13 B 261 ALA VAL VAL ILE SER CYS ALA LYS ASP GLY VAL LYS PHE
SEQRES 14 B 261 SER ALA SER GLY GLU LEU GLY ASN GLY ASN ILE LYS LEU
SEQRES 15 B 261 SER GLN THR SER ASN VAL ASP LYS GLU GLU GLU ALA VAL
SEQRES 16 B 261 THR ILE GLU MET ASN GLU PRO VAL GLN LEU THR PHE ALA
SEQRES 17 B 261 LEU ARG TYR LEU ASN PHE PHE THR LYS ALA THR PRO LEU
SEQRES 18 B 261 SER SER THR VAL THR LEU SER MET SER ALA ASP VAL PRO
SEQRES 19 B 261 LEU VAL VAL GLU TYR LYS ILE ALA ASP MET GLY HIS LEU
SEQRES 20 B 261 LYS TYR TYR LEU ALA PRO LYS ILE GLU ASP GLU GLU GLY
SEQRES 21 B 261 SER
HET T2B A 301 21
HET SO4 A 302 5
HET T2B A 303 21
HET SO4 B 301 5
HET T2B B 302 21
HETNAM T2B 4-{4-[(2S)-2-AMINO-3-HYDROXYPROPYL]-2,6-
HETNAM 2 T2B DIIODOPHENOXY}PHENOL
HETNAM SO4 SULFATE ION
FORMUL 3 T2B 3(C15 H15 I2 N O3)
FORMUL 4 SO4 2(O4 S 2-)
FORMUL 8 HOH *126(H2 O)
HELIX 1 1 GLY A 9 ASP A 21 1 13
HELIX 2 2 GLU A 55 PHE A 57 5 3
HELIX 3 3 LEU A 72 LYS A 80 1 9
HELIX 4 4 SER A 141 HIS A 153 1 13
HELIX 5 5 LEU A 209 THR A 216 1 8
HELIX 6 6 LYS A 217 SER A 222 5 6
HELIX 7 7 GLY B 9 ASP B 21 1 13
HELIX 8 8 GLU B 55 PHE B 57 5 3
HELIX 9 9 LEU B 72 CYS B 81 1 10
HELIX 10 10 SER B 141 HIS B 153 1 13
HELIX 11 11 LEU B 209 THR B 216 1 8
HELIX 12 12 LYS B 217 SER B 222 5 6
SHEET 1 A 5 THR A 59 CYS A 62 0
SHEET 2 A 5 PHE A 2 LEU A 6 -1 N GLU A 3 O ARG A 61
SHEET 3 A 5 ILE A 87 ALA A 92 -1 O ILE A 88 N LEU A 6
SHEET 4 A 5 THR A 98 GLU A 104 -1 O GLU A 104 N ILE A 87
SHEET 5 A 5 VAL A 111 LYS A 117 -1 O SER A 112 N PHE A 103
SHEET 1 B 9 LEU A 66 ASN A 71 0
SHEET 2 B 9 GLU A 25 SER A 31 -1 N ALA A 26 O VAL A 70
SHEET 3 B 9 GLY A 34 MET A 40 -1 O ASN A 36 N ASP A 29
SHEET 4 B 9 LEU A 47 ARG A 53 -1 O VAL A 48 N SER A 39
SHEET 5 B 9 GLY A 245 LEU A 251 -1 O HIS A 246 N THR A 51
SHEET 6 B 9 LEU A 235 ILE A 241 -1 N ILE A 241 O GLY A 245
SHEET 7 B 9 THR A 224 MET A 229 -1 N THR A 226 O GLU A 238
SHEET 8 B 9 CYS A 135 PRO A 140 -1 N VAL A 137 O LEU A 227
SHEET 9 B 9 THR A 196 MET A 199 -1 O THR A 196 N LYS A 138
SHEET 1 C 4 ASN A 177 SER A 183 0
SHEET 2 C 4 GLY A 166 SER A 172 -1 N VAL A 167 O LEU A 182
SHEET 3 C 4 ALA A 157 CYS A 162 -1 N VAL A 159 O SER A 170
SHEET 4 C 4 VAL A 203 ALA A 208 -1 O LEU A 205 N ILE A 160
SHEET 1 D 5 THR B 59 CYS B 62 0
SHEET 2 D 5 PHE B 2 LEU B 6 -1 N ARG B 5 O THR B 59
SHEET 3 D 5 ILE B 87 ALA B 92 -1 O LEU B 90 N ALA B 4
SHEET 4 D 5 THR B 98 GLU B 104 -1 O ALA B 100 N ARG B 91
SHEET 5 D 5 VAL B 111 LYS B 117 -1 O TYR B 114 N LEU B 101
SHEET 1 E 9 LEU B 66 ASN B 71 0
SHEET 2 E 9 GLU B 25 SER B 31 -1 N ILE B 30 O LEU B 66
SHEET 3 E 9 GLY B 34 MET B 40 -1 O ASN B 36 N ASP B 29
SHEET 4 E 9 SER B 46 ARG B 53 -1 O VAL B 48 N SER B 39
SHEET 5 E 9 GLY B 245 LEU B 251 -1 O TYR B 250 N LEU B 47
SHEET 6 E 9 VAL B 233 ILE B 241 -1 N ILE B 241 O GLY B 245
SHEET 7 E 9 THR B 224 SER B 230 -1 N SER B 228 O VAL B 236
SHEET 8 E 9 CYS B 135 PRO B 140 -1 N VAL B 137 O LEU B 227
SHEET 9 E 9 THR B 196 MET B 199 -1 O THR B 196 N LYS B 138
SHEET 1 F 4 ASN B 177 SER B 183 0
SHEET 2 F 4 GLY B 166 SER B 172 -1 N VAL B 167 O LEU B 182
SHEET 3 F 4 ALA B 157 ALA B 163 -1 N SER B 161 O LYS B 168
SHEET 4 F 4 VAL B 203 ALA B 208 -1 O LEU B 205 N ILE B 160
SITE 1 AC1 10 MET A 40 HIS A 44 LEU A 47 GLU A 124
SITE 2 AC1 10 GLY A 127 PRO A 234 TYR A 250 HOH A 452
SITE 3 AC1 10 GLN B 131 VAL B 233
SITE 1 AC2 4 ARG A 53 LYS A 240 GLY A 245 HIS A 246
SITE 1 AC3 8 GLN A 108 GLU A 109 LYS A 181 LEU A 182
SITE 2 AC3 8 SER A 183 HOH A 462 ARG B 64 ASN B 95
SITE 1 AC4 4 ARG B 53 LYS B 240 GLY B 245 HIS B 246
SITE 1 AC5 9 ASP A 232 MET B 40 VAL B 45 LEU B 47
SITE 2 AC5 9 GLY B 127 PRO B 129 GLN B 131 PRO B 234
SITE 3 AC5 9 TYR B 250
CRYST1 192.173 192.173 192.173 90.00 90.00 90.00 P 41 3 2 48
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005204 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005204 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005204 0.00000