HEADER HYDROLASE 21-AUG-13 3WH6 TITLE CRYSTAL STRUCTURE OF GH1 BETA-GLUCOSIDASE TD2F2 GLUCOSE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOMES; SOURCE 3 ORGANISM_TAXID: 408169; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PJTTD2F2 KEYWDS TIM BARREL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.JO,S.FUSHINOBU,T.UCHIYAMA,K.YAOI REVDAT 5 08-NOV-23 3WH6 1 REMARK REVDAT 4 24-AUG-22 3WH6 1 JRNL HETSYN REVDAT 3 29-JUL-20 3WH6 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 04-MAY-16 3WH6 1 JRNL REVDAT 1 03-SEP-14 3WH6 0 JRNL AUTH T.MATSUZAWA,T.JO,T.UCHIYAMA,J.A.MANNINEN,T.ARAKAWA, JRNL AUTH 2 K.MIYAZAKI,S.FUSHINOBU,K.YAOI JRNL TITL CRYSTAL STRUCTURE AND IDENTIFICATION OF A KEY AMINO ACID FOR JRNL TITL 2 GLUCOSE TOLERANCE, SUBSTRATE SPECIFICITY, AND JRNL TITL 3 TRANSGLYCOSYLATION ACTIVITY OF METAGENOMIC BETA-GLUCOSIDASE JRNL TITL 4 TD2F2. JRNL REF FEBS J. V. 283 2340 2016 JRNL REFN ISSN 1742-464X JRNL PMID 27092463 JRNL DOI 10.1111/FEBS.13743 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.UCHIYAMA,K.MIYAZAKI,K.YAOI REMARK 1 TITL CHARACTERIZATION OF A NOVEL BETA-GLUCOSIDASE FROM A COMPOST REMARK 1 TITL 2 MICROBIAL METAGENOME WITH STRONG TRANSGLYCOSYLATION ACTIVITY REMARK 1 REF J.BIOL.CHEM. V. 288 18325 2013 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 23661705 REMARK 1 DOI 10.1074/JBC.M113.471342 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 56664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4076 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3475 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.418 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3646 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3312 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4981 ; 2.276 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7591 ; 1.278 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 444 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;32.926 ;23.204 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;12.116 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 529 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4187 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 894 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 33.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UG6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M K/NA TARTRATE, 0.1M NA-CHES, 0.2M REMARK 280 LI2SO4, 0.5M D-GLUCOSE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.04350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.93150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.22700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.93150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.04350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.22700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 444 REMARK 465 GLY A 445 REMARK 465 LYS A 446 REMARK 465 LEU A 447 REMARK 465 ALA A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 346 CZ ARG A 346 NH2 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 52 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 253 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 253 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP A 279 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 288 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TYR A 294 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 346 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 346 NE - CZ - NH1 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG A 346 NE - CZ - NH2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 427 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 437 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -126.39 55.57 REMARK 500 TRP A 122 -12.26 93.87 REMARK 500 LEU A 132 -9.34 88.33 REMARK 500 ASN A 248 -61.32 -96.40 REMARK 500 THR A 322 -157.66 -93.71 REMARK 500 ASP A 324 -5.45 -141.82 REMARK 500 ASP A 369 56.68 -91.23 REMARK 500 TRP A 407 -126.76 46.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 442 GLN A 443 145.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 506 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 321 O REMARK 620 2 HOH A 793 O 99.5 REMARK 620 3 HOH A 794 O 75.2 167.0 REMARK 620 4 HOH A 845 O 89.1 78.1 89.9 REMARK 620 5 HOH A 846 O 163.5 97.0 88.6 94.1 REMARK 620 6 HOH A 847 O 79.6 99.7 91.1 168.0 97.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WH5 RELATED DB: PDB REMARK 900 RELATED ID: 3WH7 RELATED DB: PDB REMARK 900 RELATED ID: 3WH8 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THE SEQUENCE IS AVAILABLE AT UNIPARC DATABASE WITH ID REMARK 999 UPI0002639209. DBREF 3WH6 A 1 457 PDB 3WH6 3WH6 1 457 SEQRES 1 A 457 MET ALA GLY GLU ARG PHE PRO ALA ASP PHE VAL TRP GLY SEQRES 2 A 457 ALA ALA THR ALA ALA TYR GLN ILE GLU GLY ALA VAL ARG SEQRES 3 A 457 GLU ASP GLY ARG GLY VAL SER ILE TRP ASP THR PHE SER SEQRES 4 A 457 HIS THR PRO GLY LYS ILE ALA ASP GLY THR THR GLY ASP SEQRES 5 A 457 VAL ALA CYS ASP SER TYR HIS ARG TYR GLY GLU ASP ILE SEQRES 6 A 457 GLY LEU LEU ASN ALA LEU GLY MET ASN ALA TYR ARG PHE SEQRES 7 A 457 SER ILE ALA TRP PRO ARG ILE VAL PRO LEU GLY ALA GLY SEQRES 8 A 457 PRO ILE ASN GLN ALA GLY LEU ASP HIS TYR SER ARG MET SEQRES 9 A 457 VAL ASP ALA LEU LEU GLY ALA GLY LEU GLN PRO PHE VAL SEQRES 10 A 457 THR LEU TYR HIS TRP ASP LEU PRO GLN PRO LEU GLU ASP SEQRES 11 A 457 ARG LEU GLY TRP GLY SER ARG ALA THR ALA THR VAL PHE SEQRES 12 A 457 ALA GLU TYR ALA ASP ILE VAL VAL ARG GLN LEU GLY ASP SEQRES 13 A 457 ARG VAL THR HIS TRP ALA THR LEU ASN GLU PRO TRP CYS SEQRES 14 A 457 SER ALA MET LEU GLY TYR TYR LEU GLY VAL HIS ALA PRO SEQRES 15 A 457 GLY HIS THR ASP LEU LYS ARG GLY LEU GLU ALA SER HIS SEQRES 16 A 457 ASN LEU LEU LEU GLY HIS GLY LEU ALA VAL GLN ALA MET SEQRES 17 A 457 ARG ALA ALA ALA PRO GLN PRO LEU GLN ILE GLY ILE VAL SEQRES 18 A 457 LEU ASN LEU THR PRO THR TYR PRO ALA SER ASP SER PRO SEQRES 19 A 457 GLU ASP VAL ALA ALA ALA ARG ARG PHE ASP GLY PHE VAL SEQRES 20 A 457 ASN ARG TRP PHE LEU ASP PRO LEU ALA GLY ARG GLY TYR SEQRES 21 A 457 PRO GLN ASP MET LEU ASP TYR TYR GLY ALA ALA ALA PRO SEQRES 22 A 457 GLN ALA ASN PRO GLU ASP LEU THR GLN ILE ALA ALA PRO SEQRES 23 A 457 LEU ASP TRP LEU GLY VAL ASN TYR TYR GLU ARG MET ARG SEQRES 24 A 457 ALA VAL ASP ALA PRO ASP ALA SER LEU PRO GLN ALA GLN SEQRES 25 A 457 ARG LEU ASP ASP PRO ASP LEU PRO HIS THR ALA ASP ARG SEQRES 26 A 457 GLU VAL TYR PRO GLU GLY LEU TYR ASP ILE LEU LEU ARG SEQRES 27 A 457 LEU HIS ASN ASP TYR PRO PHE ARG PRO LEU TYR ILE THR SEQRES 28 A 457 GLU ASN GLY CYS ALA LEU HIS ASP GLU ILE ALA GLU ASP SEQRES 29 A 457 GLY GLY ILE HIS ASP GLY GLN ARG GLN ALA PHE PHE GLU SEQRES 30 A 457 ALA HIS LEU ALA GLN LEU GLN ARG ALA LEU ALA ALA GLY SEQRES 31 A 457 VAL PRO LEU LYS GLY TYR PHE ALA TRP SER LEU LEU ASP SEQRES 32 A 457 ASN PHE GLU TRP ALA MET GLY LEU SER MET ARG TYR GLY SEQRES 33 A 457 ILE CYS TYR THR ASN PHE GLU THR LEU GLU ARG ARG ILE SEQRES 34 A 457 LYS ASP SER GLY TYR TRP LEU ARG ASP PHE ILE ALA GLY SEQRES 35 A 457 GLN ARG GLY LYS LEU ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 A 457 HIS HIS HET BGC A 501 12 HET BGC A 502 12 HET BGC A 503 12 HET GLC A 504 12 HET NHE A 505 13 HET NA A 506 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM NA SODIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 BGC 3(C6 H12 O6) FORMUL 5 GLC C6 H12 O6 FORMUL 6 NHE C8 H17 N O3 S FORMUL 7 NA NA 1+ FORMUL 8 HOH *255(H2 O) HELIX 1 1 ALA A 17 GLU A 22 1 6 HELIX 2 2 ARG A 26 ARG A 30 5 5 HELIX 3 3 SER A 33 HIS A 40 1 8 HELIX 4 4 ASP A 56 LEU A 71 1 16 HELIX 5 5 ALA A 81 VAL A 86 1 6 HELIX 6 6 ASN A 94 ALA A 111 1 18 HELIX 7 7 PRO A 125 ASP A 130 1 6 HELIX 8 8 ARG A 131 GLY A 135 5 5 HELIX 9 9 SER A 136 GLY A 155 1 20 HELIX 10 10 GLU A 166 TYR A 176 1 11 HELIX 11 11 ASP A 186 ALA A 212 1 27 HELIX 12 12 SER A 233 ASN A 248 1 16 HELIX 13 13 ASN A 248 ALA A 256 1 9 HELIX 14 14 PRO A 261 GLY A 269 1 9 HELIX 15 15 ALA A 270 ALA A 272 5 3 HELIX 16 16 ASN A 276 ALA A 284 1 9 HELIX 17 17 PRO A 329 TYR A 343 1 15 HELIX 18 18 ASP A 369 ALA A 389 1 21 HELIX 19 19 GLU A 406 MET A 413 5 8 HELIX 20 20 LYS A 430 GLN A 443 1 14 SHEET 1 A 9 VAL A 11 ALA A 15 0 SHEET 2 A 9 ALA A 75 SER A 79 1 O ARG A 77 N ALA A 14 SHEET 3 A 9 GLN A 114 TYR A 120 1 O PHE A 116 N TYR A 76 SHEET 4 A 9 HIS A 160 ASN A 165 1 O ALA A 162 N LEU A 119 SHEET 5 A 9 GLN A 217 ASN A 223 1 O GLY A 219 N TRP A 161 SHEET 6 A 9 TRP A 289 ASN A 293 1 O GLY A 291 N ILE A 220 SHEET 7 A 9 LEU A 348 ASN A 353 1 O TYR A 349 N VAL A 292 SHEET 8 A 9 LEU A 393 TRP A 399 1 O LYS A 394 N LEU A 348 SHEET 9 A 9 VAL A 11 ALA A 15 1 N GLY A 13 O TYR A 396 SHEET 1 B 3 THR A 227 PRO A 229 0 SHEET 2 B 3 MET A 298 ASP A 302 1 O MET A 298 N TYR A 228 SHEET 3 B 3 ALA A 311 ARG A 313 -1 O GLN A 312 N VAL A 301 SHEET 1 C 2 CYS A 418 THR A 420 0 SHEET 2 C 2 ARG A 427 ILE A 429 -1 O ARG A 428 N TYR A 419 LINK O HIS A 321 NA NA A 506 1555 1555 2.33 LINK NA NA A 506 O HOH A 793 1555 1555 2.39 LINK NA NA A 506 O HOH A 794 1555 1555 2.42 LINK NA NA A 506 O HOH A 845 1555 1555 2.36 LINK NA NA A 506 O HOH A 846 1555 1555 2.36 LINK NA NA A 506 O HOH A 847 1555 1555 2.58 CISPEP 1 ALA A 181 PRO A 182 0 4.18 CISPEP 2 LEU A 308 PRO A 309 0 14.84 CISPEP 3 ARG A 346 PRO A 347 0 -4.54 CISPEP 4 TRP A 399 SER A 400 0 0.92 CRYST1 68.087 68.454 95.863 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014687 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010432 0.00000