HEADER HYDROLASE 26-AUG-13 3WHI TITLE CRYSTAL STRUCTURE OF UNAUTOPROCESSED FORM OF IS1-INSERTED PRO- TITLE 2 SUBTILISIN E COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBTILISIN E; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-381; COMPND 5 EC: 3.4.21.62; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: APRE, APR, APRA, SPRE, BSU10300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYDROLASE, PROTEOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR R.UEHARA,C.ANGKAWIDJAJA,Y.KOGA,S.KANAYA REVDAT 2 20-MAR-24 3WHI 1 REMARK SEQADV LINK REVDAT 1 25-DEC-13 3WHI 0 JRNL AUTH R.UEHARA,C.ANGKAWIDJAJA,Y.KOGA,S.KANAYA JRNL TITL FORMATION OF THE HIGH-AFFINITY CALCIUM BINDING SITE IN JRNL TITL 2 PRO-SUBTILISIN E WITH THE INSERTION SEQUENCE IS1 OF JRNL TITL 3 PRO-TK-SUBTILISIN JRNL REF BIOCHEMISTRY V. 52 9080 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24279884 JRNL DOI 10.1021/BI401342K REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.359 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.273 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.782 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5257 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7147 ; 1.854 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 705 ; 6.795 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;40.546 ;25.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 816 ;19.364 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.773 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 816 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3946 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3503 ; 0.979 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5597 ; 1.768 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 2.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1550 ; 4.350 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WHI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000096341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32656 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM PHOSPHATE MONOBASIC, REMARK 280 0.1M TRIS-HCL, 50%(V/V) (+/-)-2-METHYL-2,4-PENTADIOL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.07067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.53533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.80300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.26767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.33833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.07067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 50.53533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.26767 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 75.80300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 126.33833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 25.26767 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 84 REMARK 465 GLY A 85 REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 THR A 88 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 MET B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 LEU B 83 REMARK 465 GLY B 84 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 21 N - CA - CB ANGL. DEV. = -15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 16 -151.85 -80.98 REMARK 500 THR A 17 143.88 -25.88 REMARK 500 MET A 18 -51.50 -129.84 REMARK 500 MET A 21 -22.09 -155.36 REMARK 500 TYR A 77 41.73 -105.04 REMARK 500 LYS A 102 38.13 72.18 REMARK 500 ASP A 122 -142.33 -162.70 REMARK 500 ASP A 126 95.75 -69.32 REMARK 500 SER A 153 -7.90 85.69 REMARK 500 ALA A 163 20.05 -141.32 REMARK 500 ASN A 167 -144.40 -154.53 REMARK 500 VAL A 171 -167.34 -124.43 REMARK 500 SER A 188 -43.49 -29.31 REMARK 500 SER A 215 48.74 -87.54 REMARK 500 SER A 249 85.64 -176.17 REMARK 500 THR A 303 -156.81 -95.74 REMARK 500 PRO A 315 -8.93 -59.31 REMARK 500 GLN B 16 -52.64 -5.81 REMARK 500 HIS B 72 170.81 -58.14 REMARK 500 TYR B 77 48.89 -100.86 REMARK 500 SER B 81 -24.97 -149.27 REMARK 500 THR B 88 -161.58 -63.41 REMARK 500 ASP B 122 -144.39 -159.84 REMARK 500 ALA B 163 32.03 -150.26 REMARK 500 ASN B 167 -147.99 -158.33 REMARK 500 VAL B 171 -159.08 -122.69 REMARK 500 SER B 215 50.35 -91.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 92 OE1 REMARK 620 2 ASP A 131 OD1 155.9 REMARK 620 3 ASP A 131 OD2 150.6 53.6 REMARK 620 4 LEU A 165 O 84.8 83.1 109.0 REMARK 620 5 ASN A 167 OD1 77.7 79.5 129.6 78.8 REMARK 620 6 ILE A 169 O 86.2 101.4 83.9 166.1 88.9 REMARK 620 7 VAL A 171 O 78.4 122.1 76.0 89.1 154.0 99.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 92 OE1 REMARK 620 2 ASP B 131 OD1 157.2 REMARK 620 3 ASP B 131 OD2 150.5 52.3 REMARK 620 4 LEU B 165 O 78.5 91.5 113.7 REMARK 620 5 ASN B 167 OD1 78.7 80.0 127.7 83.8 REMARK 620 6 ILE B 169 O 90.3 94.3 82.2 163.1 81.6 REMARK 620 7 VAL B 171 O 75.6 125.5 77.3 91.2 154.3 98.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE "GKPSWLGGGSTQ" IS ARTIFICIALLY INSERTED FOR AN REMARK 999 EXPERIMENTAL PURPOSE. ALA175 -->SER IS A SEQUENCE CONFLICT. DBREF 3WHI A 1 365 UNP P04189 SUBT_BACSU 30 381 DBREF 3WHI B 1 365 UNP P04189 SUBT_BACSU 30 381 SEQADV 3WHI GLY A 78 UNP P04189 EXPRESSION TAG SEQADV 3WHI LYS A 79 UNP P04189 EXPRESSION TAG SEQADV 3WHI PRO A 80 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER A 81 UNP P04189 EXPRESSION TAG SEQADV 3WHI TRP A 82 UNP P04189 EXPRESSION TAG SEQADV 3WHI LEU A 83 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY A 84 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY A 85 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY A 86 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER A 87 UNP P04189 EXPRESSION TAG SEQADV 3WHI THR A 88 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLN A 89 UNP P04189 EXPRESSION TAG SEQADV 3WHI PRO A 90 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER A 175 UNP P04189 ALA 191 SEE REMARK 999 SEQADV 3WHI ALA A 311 UNP P04189 SER 327 ENGINEERED MUTATION SEQADV 3WHI GLY B 78 UNP P04189 EXPRESSION TAG SEQADV 3WHI LYS B 79 UNP P04189 EXPRESSION TAG SEQADV 3WHI PRO B 80 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER B 81 UNP P04189 EXPRESSION TAG SEQADV 3WHI TRP B 82 UNP P04189 EXPRESSION TAG SEQADV 3WHI LEU B 83 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY B 84 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY B 85 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLY B 86 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER B 87 UNP P04189 EXPRESSION TAG SEQADV 3WHI THR B 88 UNP P04189 EXPRESSION TAG SEQADV 3WHI GLN B 89 UNP P04189 EXPRESSION TAG SEQADV 3WHI PRO B 90 UNP P04189 EXPRESSION TAG SEQADV 3WHI SER B 175 UNP P04189 ALA 191 SEE REMARK 999 SEQADV 3WHI ALA B 311 UNP P04189 SER 327 ENGINEERED MUTATION SEQRES 1 A 365 ALA GLY LYS SER SER THR GLU LYS LYS TYR ILE VAL GLY SEQRES 2 A 365 PHE LYS GLN THR MET SER ALA MET SER SER ALA LYS LYS SEQRES 3 A 365 LYS ASP VAL ILE SER GLU LYS GLY GLY LYS VAL GLN LYS SEQRES 4 A 365 GLN PHE LYS TYR VAL ASN ALA ALA ALA ALA THR LEU ASP SEQRES 5 A 365 GLU LYS ALA VAL LYS GLU LEU LYS LYS ASP PRO SER VAL SEQRES 6 A 365 ALA TYR VAL GLU GLU ASP HIS ILE ALA HIS GLU TYR GLY SEQRES 7 A 365 LYS PRO SER TRP LEU GLY GLY GLY SER THR GLN PRO ALA SEQRES 8 A 365 GLN SER VAL PRO TYR GLY ILE SER GLN ILE LYS ALA PRO SEQRES 9 A 365 ALA LEU HIS SER GLN GLY TYR THR GLY SER ASN VAL LYS SEQRES 10 A 365 VAL ALA VAL ILE ASP SER GLY ILE ASP SER SER HIS PRO SEQRES 11 A 365 ASP LEU ASN VAL ARG GLY GLY ALA SER PHE VAL PRO SER SEQRES 12 A 365 GLU THR ASN PRO TYR GLN ASP GLY SER SER HIS GLY THR SEQRES 13 A 365 HIS VAL ALA GLY THR ILE ALA ALA LEU ASN ASN SER ILE SEQRES 14 A 365 GLY VAL LEU GLY VAL SER PRO SER ALA SER LEU TYR ALA SEQRES 15 A 365 VAL LYS VAL LEU ASP SER THR GLY SER GLY GLN TYR SER SEQRES 16 A 365 TRP ILE ILE ASN GLY ILE GLU TRP ALA ILE SER ASN ASN SEQRES 17 A 365 MET ASP VAL ILE ASN MET SER LEU GLY GLY PRO THR GLY SEQRES 18 A 365 SER THR ALA LEU LYS THR VAL VAL ASP LYS ALA VAL SER SEQRES 19 A 365 SER GLY ILE VAL VAL ALA ALA ALA ALA GLY ASN GLU GLY SEQRES 20 A 365 SER SER GLY SER THR SER THR VAL GLY TYR PRO ALA LYS SEQRES 21 A 365 TYR PRO SER THR ILE ALA VAL GLY ALA VAL ASN SER SER SEQRES 22 A 365 ASN GLN ARG ALA SER PHE SER SER ALA GLY SER GLU LEU SEQRES 23 A 365 ASP VAL MET ALA PRO GLY VAL SER ILE GLN SER THR LEU SEQRES 24 A 365 PRO GLY GLY THR TYR GLY ALA TYR ASN GLY THR ALA MET SEQRES 25 A 365 ALA THR PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE LEU SEQRES 26 A 365 SER LYS HIS PRO THR TRP THR ASN ALA GLN VAL ARG ASP SEQRES 27 A 365 ARG LEU GLU SER THR ALA THR TYR LEU GLY ASN SER PHE SEQRES 28 A 365 TYR TYR GLY LYS GLY LEU ILE ASN VAL GLN ALA ALA ALA SEQRES 29 A 365 GLN SEQRES 1 B 365 ALA GLY LYS SER SER THR GLU LYS LYS TYR ILE VAL GLY SEQRES 2 B 365 PHE LYS GLN THR MET SER ALA MET SER SER ALA LYS LYS SEQRES 3 B 365 LYS ASP VAL ILE SER GLU LYS GLY GLY LYS VAL GLN LYS SEQRES 4 B 365 GLN PHE LYS TYR VAL ASN ALA ALA ALA ALA THR LEU ASP SEQRES 5 B 365 GLU LYS ALA VAL LYS GLU LEU LYS LYS ASP PRO SER VAL SEQRES 6 B 365 ALA TYR VAL GLU GLU ASP HIS ILE ALA HIS GLU TYR GLY SEQRES 7 B 365 LYS PRO SER TRP LEU GLY GLY GLY SER THR GLN PRO ALA SEQRES 8 B 365 GLN SER VAL PRO TYR GLY ILE SER GLN ILE LYS ALA PRO SEQRES 9 B 365 ALA LEU HIS SER GLN GLY TYR THR GLY SER ASN VAL LYS SEQRES 10 B 365 VAL ALA VAL ILE ASP SER GLY ILE ASP SER SER HIS PRO SEQRES 11 B 365 ASP LEU ASN VAL ARG GLY GLY ALA SER PHE VAL PRO SER SEQRES 12 B 365 GLU THR ASN PRO TYR GLN ASP GLY SER SER HIS GLY THR SEQRES 13 B 365 HIS VAL ALA GLY THR ILE ALA ALA LEU ASN ASN SER ILE SEQRES 14 B 365 GLY VAL LEU GLY VAL SER PRO SER ALA SER LEU TYR ALA SEQRES 15 B 365 VAL LYS VAL LEU ASP SER THR GLY SER GLY GLN TYR SER SEQRES 16 B 365 TRP ILE ILE ASN GLY ILE GLU TRP ALA ILE SER ASN ASN SEQRES 17 B 365 MET ASP VAL ILE ASN MET SER LEU GLY GLY PRO THR GLY SEQRES 18 B 365 SER THR ALA LEU LYS THR VAL VAL ASP LYS ALA VAL SER SEQRES 19 B 365 SER GLY ILE VAL VAL ALA ALA ALA ALA GLY ASN GLU GLY SEQRES 20 B 365 SER SER GLY SER THR SER THR VAL GLY TYR PRO ALA LYS SEQRES 21 B 365 TYR PRO SER THR ILE ALA VAL GLY ALA VAL ASN SER SER SEQRES 22 B 365 ASN GLN ARG ALA SER PHE SER SER ALA GLY SER GLU LEU SEQRES 23 B 365 ASP VAL MET ALA PRO GLY VAL SER ILE GLN SER THR LEU SEQRES 24 B 365 PRO GLY GLY THR TYR GLY ALA TYR ASN GLY THR ALA MET SEQRES 25 B 365 ALA THR PRO HIS VAL ALA GLY ALA ALA ALA LEU ILE LEU SEQRES 26 B 365 SER LYS HIS PRO THR TRP THR ASN ALA GLN VAL ARG ASP SEQRES 27 B 365 ARG LEU GLU SER THR ALA THR TYR LEU GLY ASN SER PHE SEQRES 28 B 365 TYR TYR GLY LYS GLY LEU ILE ASN VAL GLN ALA ALA ALA SEQRES 29 B 365 GLN HET CA A 401 1 HET CA B 401 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *167(H2 O) HELIX 1 1 SER A 22 GLU A 32 1 11 HELIX 2 2 ASP A 52 ASP A 62 1 11 HELIX 3 3 PRO A 95 ILE A 101 1 7 HELIX 4 4 LYS A 102 SER A 108 1 7 HELIX 5 5 SER A 153 ALA A 164 1 12 HELIX 6 6 TYR A 194 ASN A 207 1 14 HELIX 7 7 SER A 222 SER A 235 1 14 HELIX 8 8 GLY A 309 HIS A 328 1 20 HELIX 9 9 THR A 332 THR A 343 1 12 HELIX 10 10 ASN A 349 GLY A 354 1 6 HELIX 11 11 ASN A 359 GLN A 365 1 7 HELIX 12 12 SER B 22 LYS B 33 1 12 HELIX 13 13 GLU B 53 ASP B 62 1 10 HELIX 14 14 PRO B 95 ILE B 101 1 7 HELIX 15 15 LYS B 102 GLN B 109 1 8 HELIX 16 16 HIS B 154 ALA B 164 1 11 HELIX 17 17 TYR B 194 ASN B 207 1 14 HELIX 18 18 SER B 222 SER B 235 1 14 HELIX 19 19 GLY B 309 HIS B 328 1 20 HELIX 20 20 THR B 332 THR B 343 1 12 HELIX 21 21 ASN B 349 GLY B 354 1 6 HELIX 22 22 ASN B 359 ALA B 364 1 6 SHEET 1 A 4 LYS A 36 GLN A 40 0 SHEET 2 A 4 ALA A 46 LEU A 51 -1 O ALA A 48 N LYS A 39 SHEET 3 A 4 LYS A 8 PHE A 14 -1 N LYS A 8 O LEU A 51 SHEET 4 A 4 VAL A 65 GLU A 70 -1 O GLU A 69 N ILE A 11 SHEET 1 B 3 SER A 191 GLN A 193 0 SHEET 2 B 3 ILE A 73 GLU A 76 -1 N ALA A 74 O GLY A 192 SHEET 3 B 3 LEU A 216 GLY A 217 -1 O GLY A 217 N HIS A 75 SHEET 1 C 3 LYS A 79 TRP A 82 0 SHEET 2 C 3 THR A 303 ASN A 308 -1 O ASN A 308 N LYS A 79 SHEET 3 C 3 ILE A 295 LEU A 299 -1 N ILE A 295 O TYR A 307 SHEET 1 D 7 VAL A 134 SER A 139 0 SHEET 2 D 7 SER A 179 LYS A 184 1 O LEU A 180 N ARG A 135 SHEET 3 D 7 LYS A 117 ASP A 122 1 N VAL A 120 O TYR A 181 SHEET 4 D 7 VAL A 211 MET A 214 1 O ASN A 213 N ALA A 119 SHEET 5 D 7 VAL A 238 ALA A 242 1 O ALA A 240 N ILE A 212 SHEET 6 D 7 ILE A 265 VAL A 270 1 O ILE A 265 N VAL A 239 SHEET 7 D 7 VAL A 288 PRO A 291 1 O ALA A 290 N GLY A 268 SHEET 1 E 4 LYS B 36 GLN B 40 0 SHEET 2 E 4 ALA B 46 ASP B 52 -1 O ALA B 48 N GLN B 38 SHEET 3 E 4 GLU B 7 PHE B 14 -1 N VAL B 12 O ALA B 47 SHEET 4 E 4 VAL B 65 GLU B 70 -1 O ALA B 66 N GLY B 13 SHEET 1 F 3 SER B 191 GLN B 193 0 SHEET 2 F 3 ILE B 73 GLU B 76 -1 N ALA B 74 O GLY B 192 SHEET 3 F 3 LEU B 216 GLY B 217 -1 O GLY B 217 N HIS B 75 SHEET 1 G 3 LYS B 79 PRO B 80 0 SHEET 2 G 3 THR B 303 ASN B 308 -1 O ASN B 308 N LYS B 79 SHEET 3 G 3 ILE B 295 LEU B 299 -1 N ILE B 295 O TYR B 307 SHEET 1 H 7 VAL B 134 SER B 139 0 SHEET 2 H 7 SER B 179 LYS B 184 1 O LEU B 180 N ARG B 135 SHEET 3 H 7 LYS B 117 ASP B 122 1 N VAL B 120 O TYR B 181 SHEET 4 H 7 VAL B 211 MET B 214 1 O ASN B 213 N ALA B 119 SHEET 5 H 7 VAL B 238 ALA B 242 1 O VAL B 238 N ILE B 212 SHEET 6 H 7 ILE B 265 VAL B 270 1 O ILE B 265 N VAL B 239 SHEET 7 H 7 LEU B 286 PRO B 291 1 O VAL B 288 N GLY B 268 LINK OE1 GLN A 92 CA CA A 401 1555 1555 2.11 LINK OD1 ASP A 131 CA CA A 401 1555 1555 2.18 LINK OD2 ASP A 131 CA CA A 401 1555 1555 2.57 LINK O LEU A 165 CA CA A 401 1555 1555 2.23 LINK OD1 ASN A 167 CA CA A 401 1555 1555 2.39 LINK O ILE A 169 CA CA A 401 1555 1555 2.27 LINK O VAL A 171 CA CA A 401 1555 1555 2.43 LINK OE1 GLN B 92 CA CA B 401 1555 1555 2.32 LINK OD1 ASP B 131 CA CA B 401 1555 1555 2.48 LINK OD2 ASP B 131 CA CA B 401 1555 1555 2.53 LINK O LEU B 165 CA CA B 401 1555 1555 2.24 LINK OD1 ASN B 167 CA CA B 401 1555 1555 2.25 LINK O ILE B 169 CA CA B 401 1555 1555 2.39 LINK O VAL B 171 CA CA B 401 1555 1555 2.30 CISPEP 1 THR A 17 MET A 18 0 0.78 CISPEP 2 SER A 19 ALA A 20 0 13.26 CISPEP 3 TYR A 257 PRO A 258 0 13.61 CISPEP 4 GLY B 86 SER B 87 0 -22.65 CISPEP 5 THR B 88 GLN B 89 0 -13.90 CISPEP 6 TYR B 257 PRO B 258 0 6.49 SITE 1 AC1 6 GLN A 92 ASP A 131 LEU A 165 ASN A 167 SITE 2 AC1 6 ILE A 169 VAL A 171 SITE 1 AC2 6 GLN B 92 ASP B 131 LEU B 165 ASN B 167 SITE 2 AC2 6 ILE B 169 VAL B 171 CRYST1 135.202 135.202 151.606 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007396 0.004270 0.000000 0.00000 SCALE2 0.000000 0.008541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006596 0.00000