HEADER HYDROLASE/HYDROLASE INHIBITOR 04-SEP-13 3WI2 TITLE CRYSTAL STRUCTURE OF PDE10A IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 10A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 439-779; COMPND 6 EC: 3.1.4.17, 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, CGMP BINDING, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.AMANO REVDAT 3 29-MAY-24 3WI2 1 REMARK REVDAT 2 24-AUG-22 3WI2 1 JRNL REMARK SEQADV LINK REVDAT 1 11-DEC-13 3WI2 0 JRNL AUTH W.HAMAGUCHI,N.MASUDA,M.ISOMURA,S.MIYAMOTO,S.KIKUCHI,Y.AMANO, JRNL AUTH 2 K.HONBOU,T.MIHARA,T.WATANABE JRNL TITL DESIGN AND SYNTHESIS OF NOVEL BENZIMIDAZOLE DERIVATIVES AS JRNL TITL 2 PHOSPHODIESTERASE 10A INHIBITORS WITH REDUCED CYP1A2 JRNL TITL 3 INHIBITION. JRNL REF BIOORG.MED.CHEM. V. 21 7612 2013 JRNL REFN ESSN 1464-3391 JRNL PMID 24238902 JRNL DOI 10.1016/J.BMC.2013.10.035 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 29030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.329 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.4350 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.5310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.488 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.327 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.297 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5456 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7390 ; 1.747 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 6.516 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;38.643 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 960 ;18.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.357 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4222 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000096361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 19.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM BIS-TRIS PROPANE PH6.0, 50MM REMARK 280 MAGNESIUM SULFATE, 15% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.04200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.81450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.04200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.81450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 445 REMARK 465 SER A 446 REMARK 465 THR A 771 REMARK 465 ALA A 772 REMARK 465 THR A 773 REMARK 465 TRP A 774 REMARK 465 ILE A 775 REMARK 465 SER A 776 REMARK 465 SER A 777 REMARK 465 PRO A 778 REMARK 465 SER A 779 REMARK 465 VAL A 780 REMARK 465 ALA A 781 REMARK 465 GLN A 782 REMARK 465 LYS A 783 REMARK 465 ALA A 784 REMARK 465 ALA A 785 REMARK 465 ALA A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 ASP A 789 REMARK 465 GLY B 445 REMARK 465 SER B 446 REMARK 465 THR B 771 REMARK 465 ALA B 772 REMARK 465 THR B 773 REMARK 465 TRP B 774 REMARK 465 ILE B 775 REMARK 465 SER B 776 REMARK 465 SER B 777 REMARK 465 PRO B 778 REMARK 465 SER B 779 REMARK 465 VAL B 780 REMARK 465 ALA B 781 REMARK 465 GLN B 782 REMARK 465 LYS B 783 REMARK 465 ALA B 784 REMARK 465 ALA B 785 REMARK 465 ALA B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 ASP B 789 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 901 O HOH A 905 1.94 REMARK 500 O CYS B 676 OG1 THR B 679 2.07 REMARK 500 O HOH B 904 O HOH B 908 2.07 REMARK 500 O HOH B 906 O HOH B 908 2.10 REMARK 500 O ALA A 539 ND2 ASN A 543 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 564 CB ASP B 564 CG 0.169 REMARK 500 ASP B 674 CB ASP B 674 CG 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 564 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ILE B 692 CG1 - CB - CG2 ANGL. DEV. = -15.0 DEGREES REMARK 500 PRO B 750 C - N - CA ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 521 40.06 -82.16 REMARK 500 ASN A 544 56.70 -141.21 REMARK 500 LEU A 565 113.25 -35.25 REMARK 500 ASP A 566 31.31 73.10 REMARK 500 LYS A 577 10.81 -58.24 REMARK 500 PHE A 578 98.34 140.81 REMARK 500 ASP A 579 48.19 -162.74 REMARK 500 SER A 589 75.45 52.98 REMARK 500 THR A 613 23.06 -78.58 REMARK 500 GLU A 620 48.55 -98.77 REMARK 500 GLN A 621 -54.56 -145.38 REMARK 500 THR A 651 1.07 -68.90 REMARK 500 LYS A 686 -77.21 -47.94 REMARK 500 LYS A 718 45.00 -106.39 REMARK 500 ILE B 479 -9.02 -57.11 REMARK 500 CYS B 502 -43.70 -136.41 REMARK 500 LEU B 505 -34.79 -27.73 REMARK 500 ASN B 544 47.77 -150.10 REMARK 500 LEU B 565 108.99 -46.35 REMARK 500 ASP B 566 33.80 80.38 REMARK 500 ASP B 579 79.96 29.64 REMARK 500 ASN B 609 72.82 -67.00 REMARK 500 TRP B 682 -49.37 -26.64 REMARK 500 LYS B 705 25.33 -59.53 REMARK 500 LEU B 706 25.03 -146.09 REMARK 500 ILE B 711 161.19 -47.45 REMARK 500 ASP B 717 7.35 -56.81 REMARK 500 PRO B 747 10.90 -69.29 REMARK 500 GLU B 749 -36.67 -38.57 REMARK 500 ARG B 767 32.01 -91.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 529 NE2 REMARK 620 2 HIS A 563 NE2 87.9 REMARK 620 3 ASP A 564 OD2 86.1 84.3 REMARK 620 4 ASP A 674 OD1 96.8 83.7 167.6 REMARK 620 5 HOH A 903 O 178.5 93.2 93.0 84.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 HOH A 901 O 93.3 REMARK 620 3 HOH A 902 O 86.7 112.8 REMARK 620 4 HOH A 903 O 100.0 61.3 171.0 REMARK 620 5 HOH A 904 O 118.5 138.7 95.7 86.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 529 NE2 REMARK 620 2 HIS B 563 NE2 116.8 REMARK 620 3 ASP B 564 OD2 86.1 94.5 REMARK 620 4 ASP B 674 OD1 87.1 92.0 172.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 564 OD1 REMARK 620 2 HOH B 904 O 66.3 REMARK 620 3 HOH B 905 O 86.0 70.4 REMARK 620 4 HOH B 906 O 152.4 88.6 96.5 REMARK 620 5 HOH B 907 O 104.5 169.9 105.7 101.2 REMARK 620 6 HOH B 908 O 88.2 50.3 117.0 66.1 136.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P98 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P98 B 803 DBREF 3WI2 A 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 DBREF 3WI2 B 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 SEQADV 3WI2 GLY A 445 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 SER A 446 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 HIS A 447 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 MET A 448 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 GLY B 445 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 SER B 446 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 HIS B 447 UNP Q9Y233 EXPRESSION TAG SEQADV 3WI2 MET B 448 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 345 GLY SER HIS MET SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 A 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 A 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 A 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 A 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 A 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 A 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 A 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 A 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 A 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 A 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 A 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 A 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 A 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 A 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 A 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 A 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 A 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 A 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 A 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 A 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 A 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 A 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 A 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 A 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 A 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 A 345 LYS ALA ALA ALA SER GLU ASP SEQRES 1 B 345 GLY SER HIS MET SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 B 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 B 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 B 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 B 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 B 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 B 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 B 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 B 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 B 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 B 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 B 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 B 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 B 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 B 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 B 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 B 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 B 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 B 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 B 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 B 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 B 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 B 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 B 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 B 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 B 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 B 345 LYS ALA ALA ALA SER GLU ASP HET ZN A 801 1 HET MG A 802 1 HET P98 A 803 30 HET ZN B 801 1 HET MG B 802 1 HET P98 B 803 30 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM P98 2-({[1-PHENYL-2-(PROPAN-2-YL)-1H-BENZIMIDAZOL-6- HETNAM 2 P98 YL]OXY}METHYL)QUINOLINE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 P98 2(C26 H23 N3 O) FORMUL 9 HOH *13(H2 O) HELIX 1 1 THR A 452 GLN A 461 1 10 HELIX 2 2 PRO A 465 CYS A 469 5 5 HELIX 3 3 LYS A 470 LEU A 474 5 5 HELIX 4 4 ILE A 479 ASN A 484 5 6 HELIX 5 5 MET A 485 GLY A 499 1 15 HELIX 6 6 GLU A 504 ASN A 518 1 15 HELIX 7 7 ASN A 526 ASN A 543 1 18 HELIX 8 8 THR A 549 HIS A 563 1 15 HELIX 9 9 SER A 571 LYS A 577 1 7 HELIX 10 10 SER A 589 LEU A 605 1 17 HELIX 11 11 SER A 615 ALA A 632 1 18 HELIX 12 12 ASP A 634 THR A 651 1 18 HELIX 13 13 ASN A 658 LEU A 675 1 18 HELIX 14 14 CYS A 676 LYS A 680 5 5 HELIX 15 15 LEU A 681 LYS A 705 1 25 HELIX 16 16 ILE A 711 ASP A 720 5 10 HELIX 17 17 GLU A 721 VAL A 733 1 13 HELIX 18 18 VAL A 733 LEU A 745 1 13 HELIX 19 19 THR A 748 GLY A 768 1 21 HELIX 20 20 THR B 452 PHE B 462 1 11 HELIX 21 21 PRO B 465 GLU B 473 1 9 HELIX 22 22 PHE B 482 ASN B 484 5 3 HELIX 23 23 MET B 485 GLY B 499 1 15 HELIX 24 24 GLU B 504 ASN B 518 1 15 HELIX 25 25 ASN B 526 ASN B 543 1 18 HELIX 26 26 ASN B 544 PHE B 548 5 5 HELIX 27 27 THR B 549 HIS B 563 1 15 HELIX 28 28 SER B 571 PHE B 578 1 8 HELIX 29 29 HIS B 580 TYR B 586 1 7 HELIX 30 30 SER B 589 GLN B 604 1 16 HELIX 31 31 SER B 615 ALA B 632 1 18 HELIX 32 32 THR B 633 ALA B 636 5 4 HELIX 33 33 LEU B 637 GLY B 652 1 16 HELIX 34 34 ASN B 658 LEU B 675 1 18 HELIX 35 35 CYS B 676 LYS B 680 5 5 HELIX 36 36 LEU B 681 LYS B 705 1 25 HELIX 37 37 ILE B 711 ASP B 720 5 10 HELIX 38 38 GLU B 721 VAL B 733 1 13 HELIX 39 39 VAL B 733 LEU B 745 1 13 HELIX 40 40 THR B 748 ARG B 767 1 20 LINK NE2 HIS A 529 ZN ZN A 801 1555 1555 2.06 LINK NE2 HIS A 563 ZN ZN A 801 1555 1555 2.24 LINK OD2 ASP A 564 ZN ZN A 801 1555 1555 1.98 LINK OD1 ASP A 564 MG MG A 802 1555 1555 2.13 LINK OD1 ASP A 674 ZN ZN A 801 1555 1555 2.12 LINK ZN ZN A 801 O HOH A 903 1555 1555 2.18 LINK MG MG A 802 O HOH A 901 1555 1555 2.97 LINK MG MG A 802 O HOH A 902 1555 1555 2.25 LINK MG MG A 802 O HOH A 903 1555 1555 2.12 LINK MG MG A 802 O HOH A 904 1555 1555 2.14 LINK NE2 HIS B 529 ZN ZN B 801 1555 1555 1.99 LINK NE2 HIS B 563 ZN ZN B 801 1555 1555 1.87 LINK OD2 ASP B 564 ZN ZN B 801 1555 1555 2.41 LINK OD1 ASP B 564 MG MG B 802 1555 1555 2.26 LINK OD1 ASP B 674 ZN ZN B 801 1555 1555 2.46 LINK MG MG B 802 O HOH B 904 1555 1555 2.65 LINK MG MG B 802 O HOH B 905 1555 1555 1.81 LINK MG MG B 802 O HOH B 906 1555 1555 1.79 LINK MG MG B 802 O HOH B 907 1555 1555 2.33 LINK MG MG B 802 O HOH B 908 1555 1555 2.05 CISPEP 1 PHE A 578 ASP A 579 0 -12.34 SITE 1 AC1 6 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC1 6 HOH A 901 HOH A 903 SITE 1 AC2 5 ASP A 564 HOH A 901 HOH A 902 HOH A 903 SITE 2 AC2 5 HOH A 904 SITE 1 AC3 7 ILE A 692 TYR A 693 PRO A 712 MET A 713 SITE 2 AC3 7 GLY A 725 GLN A 726 PHE A 729 SITE 1 AC4 4 HIS B 529 HIS B 563 ASP B 564 ASP B 674 SITE 1 AC5 6 ASP B 564 HOH B 904 HOH B 905 HOH B 906 SITE 2 AC5 6 HOH B 907 HOH B 908 SITE 1 AC6 13 LYS A 705 LEU A 706 LEU B 675 VAL B 678 SITE 2 AC6 13 ILE B 692 TYR B 693 PRO B 712 MET B 713 SITE 3 AC6 13 LYS B 718 GLU B 721 GLY B 725 GLN B 726 SITE 4 AC6 13 PHE B 729 CRYST1 50.115 81.629 158.084 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006326 0.00000