HEADER HYDROLASE 22-SEP-13 3WIO TITLE CRYSTAL STRUCTURE OF OSD14 IN COMPLEX WITH HYDROXY D-RING COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE STRIGOLACTONE ESTERASE D14; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-318; COMPND 5 SYNONYM: DWARF 88 ESTERASE, PROTEIN DWARF-14, PROTEIN DWARF-88, COMPND 6 PROTEIN HIGH-TILLERING DWARF 2; COMPND 7 EC: 3.1.-.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_COMMON: JAPONICA RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: D14, D88, HTD2, LOC_OS03G10620, OS03G0203200; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ALPHA/BETA-HYDROLASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-L.XUE,T.MIYAKAWA,F.HOU,H.-M.QIN,M.TANOKURA REVDAT 3 08-NOV-23 3WIO 1 REMARK SEQADV REVDAT 2 30-APR-14 3WIO 1 JRNL REVDAT 1 23-OCT-13 3WIO 0 JRNL AUTH H.NAKAMURA,Y.-L.XUE,T.MIYAKAWA,F.HOU,H.-M.QIN,K.FUKUI,X.SHI, JRNL AUTH 2 E.ITO,S.ITO,S.-H.PARK,Y.MIYAUCHI,A.ASANO,N.TOTSUKA,T.UEDA, JRNL AUTH 3 M.TANOKURA,T.ASAMI JRNL TITL MOLECULAR MECHANISM OF STRIGOLACTONE PERCEPTION BY DWARF14 JRNL REF NAT COMMUN V. 4 2613 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 24131983 JRNL DOI 10.1038/NCOMMS3613 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2047 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4108 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.279 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4206 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5729 ; 1.879 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 6.307 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;29.963 ;22.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 653 ;17.731 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;20.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3218 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2643 ; 1.050 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4254 ; 1.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1563 ; 3.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1475 ; 4.764 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000096383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VXK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 20000, 2% 1,4-DIOXANE, 0.1M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.19000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.19000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 PRO A 46 REMARK 465 GLY A 47 REMARK 465 TYR A 48 REMARK 465 GLN A 49 REMARK 465 ASP A 50 REMARK 465 PRO A 51 REMARK 465 ASN A 52 REMARK 465 SER A 53 REMARK 465 GLY B 45 REMARK 465 PRO B 46 REMARK 465 GLY B 47 REMARK 465 TYR B 48 REMARK 465 GLN B 49 REMARK 465 ASP B 50 REMARK 465 PRO B 51 REMARK 465 ASN B 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 162 O HOH B 455 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 241 CB CYS B 241 SG -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 196 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 67 149.17 -170.97 REMARK 500 TYR A 119 42.80 -87.21 REMARK 500 SER A 147 -128.93 68.36 REMARK 500 ARG A 175 128.17 -173.00 REMARK 500 SER A 180 -65.44 -27.84 REMARK 500 ASN A 201 89.71 -153.83 REMARK 500 GLN A 293 23.28 -79.85 REMARK 500 ASP B 81 -164.64 -123.20 REMARK 500 ARG B 117 -61.21 -90.39 REMARK 500 SER B 147 -110.21 48.27 REMARK 500 ASP B 179 82.50 -170.02 REMARK 500 SER B 180 -140.31 58.36 REMARK 500 ASN B 201 82.03 -152.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H3M A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VXK RELATED DB: PDB DBREF 3WIO A 54 318 UNP Q10QA5 D14_ORYSJ 54 318 DBREF 3WIO B 54 318 UNP Q10QA5 D14_ORYSJ 54 318 SEQADV 3WIO GLY A 45 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO PRO A 46 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO GLY A 47 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO TYR A 48 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO GLN A 49 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO ASP A 50 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO PRO A 51 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO ASN A 52 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO SER A 53 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO GLY B 45 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO PRO B 46 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO GLY B 47 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO TYR B 48 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO GLN B 49 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO ASP B 50 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO PRO B 51 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO ASN B 52 UNP Q10QA5 EXPRESSION TAG SEQADV 3WIO SER B 53 UNP Q10QA5 EXPRESSION TAG SEQRES 1 A 274 GLY PRO GLY TYR GLN ASP PRO ASN SER ALA LYS LEU LEU SEQRES 2 A 274 GLN ILE LEU ASN VAL ARG VAL VAL GLY SER GLY GLU ARG SEQRES 3 A 274 VAL VAL VAL LEU SER HIS GLY PHE GLY THR ASP GLN SER SEQRES 4 A 274 ALA TRP SER ARG VAL LEU PRO TYR LEU THR ARG ASP HIS SEQRES 5 A 274 ARG VAL VAL LEU TYR ASP LEU VAL CYS ALA GLY SER VAL SEQRES 6 A 274 ASN PRO ASP HIS PHE ASP PHE ARG ARG TYR ASP ASN LEU SEQRES 7 A 274 ASP ALA TYR VAL ASP ASP LEU LEU ALA ILE LEU ASP ALA SEQRES 8 A 274 LEU ARG ILE PRO ARG CYS ALA PHE VAL GLY HIS SER VAL SEQRES 9 A 274 SER ALA MET ILE GLY ILE LEU ALA SER ILE ARG ARG PRO SEQRES 10 A 274 ASP LEU PHE ALA LYS LEU VAL LEU ILE GLY ALA SER PRO SEQRES 11 A 274 ARG PHE LEU ASN ASP SER ASP TYR HIS GLY GLY PHE GLU SEQRES 12 A 274 LEU GLU GLU ILE GLN GLN VAL PHE ASP ALA MET GLY ALA SEQRES 13 A 274 ASN TYR SER ALA TRP ALA THR GLY TYR ALA PRO LEU ALA SEQRES 14 A 274 VAL GLY ALA ASP VAL PRO ALA ALA VAL GLN GLU PHE SER SEQRES 15 A 274 ARG THR LEU PHE ASN MET ARG PRO ASP ILE SER LEU HIS SEQRES 16 A 274 VAL CYS GLN THR VAL PHE LYS THR ASP LEU ARG GLY VAL SEQRES 17 A 274 LEU GLY MET VAL ARG ALA PRO CYS VAL VAL VAL GLN THR SEQRES 18 A 274 THR ARG ASP VAL SER VAL PRO ALA SER VAL ALA ALA TYR SEQRES 19 A 274 LEU LYS ALA HIS LEU GLY GLY ARG THR THR VAL GLU PHE SEQRES 20 A 274 LEU GLN THR GLU GLY HIS LEU PRO HIS LEU SER ALA PRO SEQRES 21 A 274 SER LEU LEU ALA GLN VAL LEU ARG ARG ALA LEU ALA ARG SEQRES 22 A 274 TYR SEQRES 1 B 274 GLY PRO GLY TYR GLN ASP PRO ASN SER ALA LYS LEU LEU SEQRES 2 B 274 GLN ILE LEU ASN VAL ARG VAL VAL GLY SER GLY GLU ARG SEQRES 3 B 274 VAL VAL VAL LEU SER HIS GLY PHE GLY THR ASP GLN SER SEQRES 4 B 274 ALA TRP SER ARG VAL LEU PRO TYR LEU THR ARG ASP HIS SEQRES 5 B 274 ARG VAL VAL LEU TYR ASP LEU VAL CYS ALA GLY SER VAL SEQRES 6 B 274 ASN PRO ASP HIS PHE ASP PHE ARG ARG TYR ASP ASN LEU SEQRES 7 B 274 ASP ALA TYR VAL ASP ASP LEU LEU ALA ILE LEU ASP ALA SEQRES 8 B 274 LEU ARG ILE PRO ARG CYS ALA PHE VAL GLY HIS SER VAL SEQRES 9 B 274 SER ALA MET ILE GLY ILE LEU ALA SER ILE ARG ARG PRO SEQRES 10 B 274 ASP LEU PHE ALA LYS LEU VAL LEU ILE GLY ALA SER PRO SEQRES 11 B 274 ARG PHE LEU ASN ASP SER ASP TYR HIS GLY GLY PHE GLU SEQRES 12 B 274 LEU GLU GLU ILE GLN GLN VAL PHE ASP ALA MET GLY ALA SEQRES 13 B 274 ASN TYR SER ALA TRP ALA THR GLY TYR ALA PRO LEU ALA SEQRES 14 B 274 VAL GLY ALA ASP VAL PRO ALA ALA VAL GLN GLU PHE SER SEQRES 15 B 274 ARG THR LEU PHE ASN MET ARG PRO ASP ILE SER LEU HIS SEQRES 16 B 274 VAL CYS GLN THR VAL PHE LYS THR ASP LEU ARG GLY VAL SEQRES 17 B 274 LEU GLY MET VAL ARG ALA PRO CYS VAL VAL VAL GLN THR SEQRES 18 B 274 THR ARG ASP VAL SER VAL PRO ALA SER VAL ALA ALA TYR SEQRES 19 B 274 LEU LYS ALA HIS LEU GLY GLY ARG THR THR VAL GLU PHE SEQRES 20 B 274 LEU GLN THR GLU GLY HIS LEU PRO HIS LEU SER ALA PRO SEQRES 21 B 274 SER LEU LEU ALA GLN VAL LEU ARG ARG ALA LEU ALA ARG SEQRES 22 B 274 TYR HET H3M A 401 8 HETNAM H3M (5R)-5-HYDROXY-3-METHYLFURAN-2(5H)-ONE FORMUL 3 H3M C5 H6 O3 FORMUL 4 HOH *195(H2 O) HELIX 1 1 ALA A 54 LEU A 60 1 7 HELIX 2 2 ASP A 81 SER A 86 5 6 HELIX 3 3 VAL A 88 LEU A 92 5 5 HELIX 4 4 ASN A 110 PHE A 114 5 5 HELIX 5 5 ARG A 117 ASN A 121 5 5 HELIX 6 6 LEU A 122 ARG A 137 1 16 HELIX 7 7 SER A 147 ARG A 160 1 14 HELIX 8 8 GLU A 187 ASN A 201 1 15 HELIX 9 9 ASN A 201 GLY A 215 1 15 HELIX 10 10 VAL A 218 MET A 232 1 15 HELIX 11 11 ARG A 233 LYS A 246 1 14 HELIX 12 12 LEU A 249 VAL A 256 5 8 HELIX 13 13 SER A 274 LEU A 283 1 10 HELIX 14 14 LEU A 298 ALA A 303 1 6 HELIX 15 15 ALA A 303 LEU A 315 1 13 HELIX 16 16 LYS B 55 LEU B 60 1 6 HELIX 17 17 ASP B 81 SER B 86 5 6 HELIX 18 18 LEU B 89 ARG B 94 1 6 HELIX 19 19 ASN B 110 PHE B 114 5 5 HELIX 20 20 ARG B 117 ASP B 120 5 4 HELIX 21 21 ASN B 121 LEU B 136 1 16 HELIX 22 22 SER B 147 ARG B 160 1 14 HELIX 23 23 GLU B 187 ASN B 201 1 15 HELIX 24 24 ASN B 201 GLY B 215 1 15 HELIX 25 25 VAL B 218 MET B 232 1 15 HELIX 26 26 ARG B 233 LYS B 246 1 14 HELIX 27 27 LEU B 249 VAL B 256 5 8 HELIX 28 28 SER B 274 LEU B 283 1 10 HELIX 29 29 LEU B 298 ALA B 303 1 6 HELIX 30 30 ALA B 303 ARG B 317 1 15 SHEET 1 A 7 ARG A 63 GLY A 66 0 SHEET 2 A 7 ARG A 97 LEU A 100 -1 O VAL A 98 N VAL A 65 SHEET 3 A 7 VAL A 71 SER A 75 1 N VAL A 72 O VAL A 99 SHEET 4 A 7 CYS A 141 HIS A 146 1 O VAL A 144 N SER A 75 SHEET 5 A 7 PHE A 164 ILE A 170 1 O ILE A 170 N GLY A 145 SHEET 6 A 7 CYS A 260 GLN A 264 1 O VAL A 261 N LEU A 169 SHEET 7 A 7 THR A 287 PHE A 291 1 O THR A 288 N VAL A 262 SHEET 1 B 7 ARG B 63 GLY B 66 0 SHEET 2 B 7 ARG B 97 LEU B 100 -1 O VAL B 98 N VAL B 65 SHEET 3 B 7 VAL B 71 SER B 75 1 N LEU B 74 O VAL B 99 SHEET 4 B 7 CYS B 141 HIS B 146 1 O VAL B 144 N SER B 75 SHEET 5 B 7 PHE B 164 ILE B 170 1 O ALA B 165 N CYS B 141 SHEET 6 B 7 CYS B 260 GLN B 264 1 O VAL B 261 N LEU B 169 SHEET 7 B 7 THR B 287 PHE B 291 1 O GLU B 290 N GLN B 264 SITE 1 AC1 6 PHE A 186 VAL A 194 TRP A 205 TYR A 209 SITE 2 AC1 6 PHE A 245 SER A 270 CRYST1 48.380 88.130 119.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008402 0.00000