HEADER TRANSPORT PROTEIN/INHIBITOR 18-NOV-13 3WMG TITLE CRYSTAL STRUCTURE OF AN INWARD-FACING EUKARYOTIC ABC MULTIDRUG TITLE 2 TRANSPORTER G277V/A278V/A279V MUTANT IN COMPLEX WITH AN CYCLIC TITLE 3 PEPTIDE INHIBITOR, ACAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-BINDING CASSETTE, SUB-FAMILY B, MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TMD AND NBD DOMAIN, UNP RESIDUES 93-696; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTI-CMABCB1 PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYANIDIOSCHYZON MEROLAE; SOURCE 3 ORGANISM_TAXID: 45157; SOURCE 4 GENE: CYME_CMD148C; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AD1-8U; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PABC3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SELECTED BY THE RAPID SYSTEM PROTOCOL KEYWDS REC FOLD, MULTI DRUG TRANSPORTER, MACROCYCLIC PEPTIDE, TRANSPORT KEYWDS 2 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KODAN,T.YAMAGUCHI,T.NAKATSU,K.SAKIYAMA,C.J.HIPOLITO,A.FUJIOKA, AUTHOR 2 R.HIROKANE,K.IKEGUCHI,B.WATANABE,J.HIRTAKE,Y.KIMURA,H.SUGA,K.UEDA, AUTHOR 3 H.KATO REVDAT 3 22-NOV-17 3WMG 1 REMARK REVDAT 2 14-MAY-14 3WMG 1 REMARK REVDAT 1 30-APR-14 3WMG 0 JRNL AUTH A.KODAN,T.YAMAGUCHI,T.NAKATSU,K.SAKIYAMA,C.J.HIPOLITO, JRNL AUTH 2 A.FUJIOKA,R.HIROKANE,K.IKEGUCHI,B.WATANABE,J.HIRATAKE, JRNL AUTH 3 Y.KIMURA,H.SUGA,K.UEDA,H.KATO JRNL TITL STRUCTURAL BASIS FOR GATING MECHANISMS OF A EUKARYOTIC JRNL TITL 2 P-GLYCOPROTEIN HOMOLOG. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 4049 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24591620 JRNL DOI 10.1073/PNAS.1321562111 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2434 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4540 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4736 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6428 ; 1.080 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 4.686 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;36.718 ;23.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;16.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 759 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3495 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 102 A 690 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7196 51.4910 34.8452 REMARK 3 T TENSOR REMARK 3 T11: 0.0716 T22: 0.0826 REMARK 3 T33: 0.0139 T12: 0.0430 REMARK 3 T13: -0.0006 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.1670 L22: 0.1201 REMARK 3 L33: 0.0825 L12: -0.0579 REMARK 3 L13: -0.1056 L23: 0.0759 REMARK 3 S TENSOR REMARK 3 S11: -0.0531 S12: -0.0296 S13: 0.0038 REMARK 3 S21: -0.0061 S22: 0.0373 S23: 0.0312 REMARK 3 S31: 0.0253 S32: 0.0233 S33: 0.0158 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000096519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36663 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 2000 MME, 100MM REMARK 280 MAGNESIUM NITRATE, PH 6.3, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.24500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.10298 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.05467 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.24500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.10298 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.05467 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.24500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.10298 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.05467 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.24500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.10298 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.05467 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.24500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.10298 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.05467 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.24500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.10298 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.05467 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 104.20595 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 102.10933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 104.20595 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 102.10933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 104.20595 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 102.10933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 104.20595 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.10933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 104.20595 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 102.10933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 104.20595 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 102.10933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 914 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE ANTI-CMABCB1 PEPTIDE IS CYCLIC PEPTIDE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ANTI-CMABCB1 PEPTIDE REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 PRO A 96 REMARK 465 GLU A 97 REMARK 465 SER A 98 REMARK 465 ALA A 99 REMARK 465 TYR A 100 REMARK 465 THR A 101 REMARK 465 GLY A 691 REMARK 465 ASP A 692 REMARK 465 MET A 693 REMARK 465 SER A 694 REMARK 465 ALA A 695 REMARK 465 ALA A 696 REMARK 465 SER A 697 REMARK 465 GLY A 698 REMARK 465 ARG A 699 REMARK 465 ASP A 700 REMARK 465 TYR A 701 REMARK 465 LYS A 702 REMARK 465 ASP A 703 REMARK 465 ASP A 704 REMARK 465 ASP A 705 REMARK 465 ASP A 706 REMARK 465 LYS A 707 REMARK 465 HIS A 708 REMARK 465 HIS A 709 REMARK 465 HIS A 710 REMARK 465 HIS A 711 REMARK 465 HIS A 712 REMARK 465 HIS A 713 REMARK 465 GLY B 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 SER A 154 OG REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ILE A 176 CD1 REMARK 470 ARG A 191 CZ NH1 NH2 REMARK 470 LYS A 216 CD CE NZ REMARK 470 ASP A 227 OD1 OD2 REMARK 470 GLN A 229 OE1 NE2 REMARK 470 VAL A 265 CG1 CG2 REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 SER A 270 OG REMARK 470 LEU A 272 CG CD1 CD2 REMARK 470 VAL A 277 CG1 CG2 REMARK 470 VAL A 278 CG1 CG2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 MET A 284 CG SD CE REMARK 470 SER A 285 OG REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 470 TRP A 364 CE3 CZ2 CZ3 CH2 REMARK 470 ARG A 371 CD NE CZ NH1 NH2 REMARK 470 LYS A 440 CE NZ REMARK 470 ASN A 457 CG OD1 ND2 REMARK 470 VAL A 578 CG1 CG2 REMARK 470 GLU A 580 OE1 OE2 REMARK 470 ARG A 581 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 583 CD1 CD2 REMARK 470 LEU A 615 CG CD1 CD2 REMARK 470 ASP A 616 CG OD1 OD2 REMARK 470 GLN A 624 CD OE1 NE2 REMARK 470 ARG A 644 CZ NH1 NH2 REMARK 470 LEU A 674 CD1 CD2 REMARK 470 LYS A 686 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 151 -164.89 -108.39 REMARK 500 ARG A 455 52.38 -147.15 REMARK 500 LYS A 546 104.45 -165.79 REMARK 500 LEU A 615 -61.81 -142.74 REMARK 500 PRO A 676 4.34 -59.90 REMARK 500 HIS B 15 77.25 59.90 REMARK 500 LEU B 16 -66.28 -103.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 DMU A 801 REMARK 610 DMU A 802 REMARK 610 DMU A 803 REMARK 610 DMU A 804 REMARK 610 DMU B 101 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMU A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMU A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMU A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMU B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF ANTI-CMABCB1 PEPTIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WME RELATED DB: PDB REMARK 900 RELATED ID: 3WMF RELATED DB: PDB DBREF 3WMG A 93 696 UNP M1VAN7 M1VAN7_CYAME 93 696 DBREF 3WMG B 0 18 PDB 3WMG 3WMG 0 18 SEQADV 3WMG VAL A 277 UNP M1VAN7 GLY 277 ENGINEERED MUTATION SEQADV 3WMG VAL A 278 UNP M1VAN7 ALA 278 ENGINEERED MUTATION SEQADV 3WMG VAL A 279 UNP M1VAN7 ALA 279 ENGINEERED MUTATION SEQADV 3WMG SER A 697 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG GLY A 698 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ARG A 699 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ASP A 700 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG TYR A 701 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG LYS A 702 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ASP A 703 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ASP A 704 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ASP A 705 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG ASP A 706 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG LYS A 707 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 708 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 709 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 710 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 711 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 712 UNP M1VAN7 EXPRESSION TAG SEQADV 3WMG HIS A 713 UNP M1VAN7 EXPRESSION TAG SEQRES 1 A 621 ALA SER GLY PRO GLU SER ALA TYR THR THR GLY VAL THR SEQRES 2 A 621 ALA ARG ARG ILE PHE ALA LEU ALA TRP SER SER SER ALA SEQRES 3 A 621 THR MET ILE VAL ILE GLY PHE ILE ALA SER ILE LEU GLU SEQRES 4 A 621 GLY ALA THR LEU PRO ALA PHE ALA ILE VAL PHE GLY ARG SEQRES 5 A 621 MET PHE GLN VAL PHE THR LYS SER LYS SER GLN ILE GLU SEQRES 6 A 621 GLY GLU THR TRP LYS TYR SER VAL GLY PHE VAL GLY ILE SEQRES 7 A 621 GLY VAL PHE GLU PHE ILE VAL ALA GLY SER ARG THR ALA SEQRES 8 A 621 LEU PHE GLY ILE ALA SER GLU ARG LEU ALA ARG ASP LEU SEQRES 9 A 621 ARG VAL ALA ALA PHE SER ASN LEU VAL GLU GLN ASP VAL SEQRES 10 A 621 THR TYR PHE ASP ARG ARG LYS ALA GLY GLU LEU GLY GLY SEQRES 11 A 621 LYS LEU ASN ASN ASP VAL GLN VAL ILE GLN TYR SER PHE SEQRES 12 A 621 SER LYS LEU GLY ALA VAL LEU PHE ASN LEU ALA GLN CYS SEQRES 13 A 621 VAL VAL GLY ILE ILE VAL ALA PHE ILE PHE ALA PRO ALA SEQRES 14 A 621 LEU THR GLY VAL LEU ILE ALA LEU SER PRO LEU VAL VAL SEQRES 15 A 621 LEU ALA VAL VAL VAL GLN MET ILE GLU MET SER GLY ASN SEQRES 16 A 621 THR LYS ARG SER SER GLU ALA TYR ALA SER ALA GLY SER SEQRES 17 A 621 VAL ALA ALA GLU VAL PHE SER ASN ILE ARG THR THR LYS SEQRES 18 A 621 ALA PHE GLU ALA GLU ARG TYR GLU THR GLN ARG TYR GLY SEQRES 19 A 621 SER LYS LEU ASP PRO LEU TYR ARG LEU GLY ARG ARG ARG SEQRES 20 A 621 TYR ILE SER ASP GLY LEU PHE PHE GLY LEU SER MET LEU SEQRES 21 A 621 VAL ILE PHE CYS VAL TYR ALA LEU ALA LEU TRP TRP GLY SEQRES 22 A 621 GLY GLN LEU ILE ALA ARG GLY SER LEU ASN LEU GLY ASN SEQRES 23 A 621 LEU LEU THR ALA PHE PHE SER ALA ILE LEU GLY PHE MET SEQRES 24 A 621 GLY VAL GLY GLN ALA ALA GLN VAL TRP PRO ASP VAL THR SEQRES 25 A 621 ARG GLY LEU GLY ALA GLY GLY GLU LEU PHE ALA MET ILE SEQRES 26 A 621 ASP ARG VAL PRO GLN TYR ARG ARG PRO ASP PRO GLY ALA SEQRES 27 A 621 GLU VAL VAL THR GLN PRO LEU VAL LEU LYS GLN GLY ILE SEQRES 28 A 621 VAL PHE GLU ASN VAL HIS PHE ARG TYR PRO THR ARG MET SEQRES 29 A 621 ASN VAL GLU VAL LEU ARG GLY ILE SER LEU THR ILE PRO SEQRES 30 A 621 ASN GLY LYS THR VAL ALA ILE VAL GLY GLY SER GLY ALA SEQRES 31 A 621 GLY LYS SER THR ILE ILE GLN LEU LEU MET ARG PHE TYR SEQRES 32 A 621 ASP ILE GLU PRO GLN GLY GLY GLY LEU LEU LEU PHE ASP SEQRES 33 A 621 GLY THR PRO ALA TRP ASN TYR ASP PHE HIS ALA LEU ARG SEQRES 34 A 621 SER GLN ILE GLY LEU VAL SER GLN GLU PRO VAL LEU PHE SEQRES 35 A 621 SER GLY THR ILE ARG ASP ASN ILE LEU TYR GLY LYS ARG SEQRES 36 A 621 ASP ALA THR ASP GLU GLU VAL ILE GLN ALA LEU ARG GLU SEQRES 37 A 621 ALA ASN ALA TYR SER PHE VAL MET ALA LEU PRO ASP GLY SEQRES 38 A 621 LEU ASP THR GLU VAL GLY GLU ARG GLY LEU ALA LEU SER SEQRES 39 A 621 GLY GLY GLN LYS GLN ARG ILE ALA ILE ALA ARG ALA ILE SEQRES 40 A 621 LEU LYS HIS PRO THR LEU LEU CYS LEU ASP GLU SER THR SEQRES 41 A 621 SER ALA LEU ASP ALA GLU SER GLU ALA LEU VAL GLN GLU SEQRES 42 A 621 ALA LEU ASP ARG MET MET ALA SER ASP GLY VAL THR SER SEQRES 43 A 621 VAL VAL ILE ALA HIS ARG LEU SER THR VAL ALA ARG ALA SEQRES 44 A 621 ASP LEU ILE LEU VAL MET GLN ASP GLY VAL VAL VAL GLU SEQRES 45 A 621 GLN GLY ASN HIS SER GLU LEU MET ALA LEU GLY PRO SER SEQRES 46 A 621 GLY PHE TYR TYR GLN LEU VAL GLU LYS GLN LEU ALA SER SEQRES 47 A 621 GLY ASP MET SER ALA ALA SER GLY ARG ASP TYR LYS ASP SEQRES 48 A 621 ASP ASP ASP LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 19 ACE DTR LEU ASP GLN ILE VAL TRP PHE ASN ALA PRO GLY SEQRES 2 B 19 ASP LEU HIS LEU CYS GLY HET ACE B 0 3 HET DTR B 1 14 HET DMU A 801 26 HET DMU A 802 8 HET DMU A 803 6 HET DMU A 804 23 HET TRS A 805 8 HET DMU B 101 28 HETNAM ACE ACETYL GROUP HETNAM DTR D-TRYPTOPHAN HETNAM DMU DECYL-BETA-D-MALTOPYRANOSIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN DMU DECYLMALTOSIDE HETSYN TRS TRIS BUFFER FORMUL 2 ACE C2 H4 O FORMUL 2 DTR C11 H12 N2 O2 FORMUL 3 DMU 5(C22 H42 O11) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 9 HOH *101(H2 O) HELIX 1 1 THR A 102 SER A 117 1 16 HELIX 2 2 SER A 117 GLY A 132 1 16 HELIX 3 3 ALA A 133 THR A 150 1 18 HELIX 4 4 SER A 152 VAL A 205 1 54 HELIX 5 5 ASP A 208 ARG A 214 1 7 HELIX 6 6 GLY A 218 ALA A 259 1 42 HELIX 7 7 ALA A 259 SER A 270 1 12 HELIX 8 8 SER A 270 SER A 285 1 16 HELIX 9 9 GLY A 286 ASN A 308 1 23 HELIX 10 10 ASN A 308 PHE A 315 1 8 HELIX 11 11 ALA A 317 LYS A 328 1 12 HELIX 12 12 LEU A 329 ARG A 371 1 43 HELIX 13 13 ASN A 375 ARG A 419 1 45 HELIX 14 14 SER A 480 MET A 492 1 13 HELIX 15 15 TRP A 513 TYR A 515 5 3 HELIX 16 16 ASP A 516 SER A 522 1 7 HELIX 17 17 ILE A 538 TYR A 544 1 7 HELIX 18 18 THR A 550 ALA A 561 1 12 HELIX 19 19 ALA A 563 ALA A 569 1 7 HELIX 20 20 ASP A 572 ASP A 575 5 4 HELIX 21 21 SER A 586 LEU A 600 1 15 HELIX 22 22 ASP A 616 SER A 633 1 18 HELIX 23 23 ARG A 644 ALA A 651 1 8 HELIX 24 24 ASN A 667 ALA A 673 1 7 HELIX 25 25 GLY A 678 GLN A 687 1 10 HELIX 26 26 DTR B 1 VAL B 6 1 6 SHEET 1 A 4 LEU A 461 PRO A 469 0 SHEET 2 A 4 GLY A 442 PHE A 450 -1 N ILE A 443 O ILE A 468 SHEET 3 A 4 LEU A 504 PHE A 507 -1 O LEU A 504 N GLU A 446 SHEET 4 A 4 THR A 510 PRO A 511 -1 O THR A 510 N PHE A 507 SHEET 1 B 6 ILE A 524 VAL A 527 0 SHEET 2 B 6 LEU A 605 ASP A 609 1 O CYS A 607 N GLY A 525 SHEET 3 B 6 THR A 637 ILE A 641 1 O VAL A 639 N LEU A 606 SHEET 4 B 6 THR A 473 GLY A 478 1 N VAL A 474 O SER A 638 SHEET 5 B 6 LEU A 653 GLN A 658 1 O MET A 657 N VAL A 477 SHEET 6 B 6 VAL A 661 GLY A 666 -1 O GLU A 664 N VAL A 656 SHEET 1 C 2 GLY A 536 THR A 537 0 SHEET 2 C 2 GLU A 577 VAL A 578 -1 O VAL A 578 N GLY A 536 LINK C ACE B 0 N DTR B 1 1555 1555 1.33 LINK C DTR B 1 N LEU B 2 1555 1555 1.33 LINK CH3 ACE B 0 SG CYS B 17 1555 1555 1.85 SITE 1 AC1 5 TRP A 114 THR A 119 VAL A 122 MET A 456 SITE 2 AC1 5 DMU A 804 SITE 1 AC2 2 GLY A 179 ALA A 183 SITE 1 AC3 3 ARG A 107 TRP A 114 DMU A 801 SITE 1 AC4 6 GLY A 471 MET A 631 ALA A 632 SER A 633 SITE 2 AC4 6 VAL A 636 ASP A 652 SITE 1 AC5 2 PHE B 8 LEU B 14 SITE 1 AC6 7 ARG A 144 LYS A 162 TYR A 163 ILE A 257 SITE 2 AC6 7 ASN A 375 ASN A 378 DMU B 101 CRYST1 180.490 180.490 153.164 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005540 0.003199 0.000000 0.00000 SCALE2 0.000000 0.006398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006529 0.00000