HEADER HYDROLASE 22-NOV-13 3WMR TITLE CRYSTAL STRUCTURE OF VINJ COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE IMINOPEPTIDASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES HALSTEDII; SOURCE 3 ORGANISM_TAXID: 1944; SOURCE 4 GENE: VINJ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA HYDROLASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHINOHARA,A.MIYANAGA,F.KUDO,T.EGUCHI REVDAT 3 08-NOV-23 3WMR 1 REMARK SEQADV REVDAT 2 19-MAR-14 3WMR 1 JRNL REVDAT 1 05-FEB-14 3WMR 0 JRNL AUTH Y.SHINOHARA,A.MIYANAGA,F.KUDO,T.EGUCHI JRNL TITL THE CRYSTAL STRUCTURE OF THE AMIDOHYDROLASE VINJ SHOWS A JRNL TITL 2 UNIQUE HYDROPHOBIC TUNNEL FOR ITS INTERACTION WITH JRNL TITL 3 POLYKETIDE SUBSTRATES JRNL REF FEBS LETT. V. 588 995 2014 JRNL REFN ISSN 0014-5793 JRNL PMID 24530530 JRNL DOI 10.1016/J.FEBSLET.2014.01.060 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.8 REMARK 3 NUMBER OF REFLECTIONS : 60460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3298 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.91000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.37000 REMARK 3 B13 (A**2) : -0.22000 REMARK 3 B23 (A**2) : -0.08000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7298 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6750 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9960 ; 1.214 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15540 ; 0.774 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 885 ; 5.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 345 ;34.230 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1101 ;12.298 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.491 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1080 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8226 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1698 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 299 REMARK 3 RESIDUE RANGE : A 401 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4737 36.0685 -20.0853 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0714 REMARK 3 T33: 0.1092 T12: -0.0153 REMARK 3 T13: -0.0121 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1097 L22: 1.9198 REMARK 3 L33: 0.4087 L12: -0.1506 REMARK 3 L13: -0.0642 L23: -0.5311 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.0009 S13: -0.0344 REMARK 3 S21: -0.1018 S22: 0.0273 S23: 0.0661 REMARK 3 S31: 0.0337 S32: -0.0235 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 299 REMARK 3 RESIDUE RANGE : B 400 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5659 72.7610 -1.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0781 REMARK 3 T33: 0.0910 T12: 0.0034 REMARK 3 T13: 0.0047 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.1176 L22: 0.2732 REMARK 3 L33: 1.4327 L12: -0.1038 REMARK 3 L13: -0.0339 L23: -0.0695 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.0017 S13: 0.0135 REMARK 3 S21: 0.0237 S22: 0.0553 S23: 0.0077 REMARK 3 S31: 0.0172 S32: -0.0223 S33: -0.0783 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 299 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4649 40.3046 26.8518 REMARK 3 T TENSOR REMARK 3 T11: 0.0224 T22: 0.0922 REMARK 3 T33: 0.0733 T12: -0.0132 REMARK 3 T13: 0.0061 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.3115 L22: 1.0205 REMARK 3 L33: 0.5158 L12: -0.1977 REMARK 3 L13: 0.0606 L23: 0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.0257 S13: -0.0169 REMARK 3 S21: -0.1031 S22: 0.0670 S23: -0.0346 REMARK 3 S31: -0.0399 S32: 0.0672 S33: -0.0389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-13. REMARK 100 THE DEPOSITION ID IS D_1000096530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3NWO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM ACETATE, 20% POLYETHYLENE REMARK 280 GLYCOL 3350, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 ASN A -14 REMARK 465 HIS A -13 REMARK 465 LYS A -12 REMARK 465 VAL A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 ILE A -4 REMARK 465 GLU A -3 REMARK 465 GLY A -2 REMARK 465 ARG A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 MET B -15 REMARK 465 ASN B -14 REMARK 465 HIS B -13 REMARK 465 LYS B -12 REMARK 465 VAL B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ILE B -4 REMARK 465 GLU B -3 REMARK 465 GLY B -2 REMARK 465 ARG B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 MET C -15 REMARK 465 ASN C -14 REMARK 465 HIS C -13 REMARK 465 LYS C -12 REMARK 465 VAL C -11 REMARK 465 HIS C -10 REMARK 465 HIS C -9 REMARK 465 HIS C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 ILE C -4 REMARK 465 GLU C -3 REMARK 465 GLY C -2 REMARK 465 ARG C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 111.27 -168.34 REMARK 500 SER A 110 -135.69 67.22 REMARK 500 ASN A 215 -63.18 -102.93 REMARK 500 SER A 276 -109.49 -112.88 REMARK 500 ASP B 103 110.14 -167.11 REMARK 500 SER B 110 -127.08 57.06 REMARK 500 ASN B 215 -63.70 -104.68 REMARK 500 SER B 276 -103.88 -118.71 REMARK 500 ASP C 103 106.15 -165.78 REMARK 500 SER C 110 -127.80 60.15 REMARK 500 ASN C 215 -61.40 -96.84 REMARK 500 SER C 276 -106.92 -116.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4G A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P4G B 402 DBREF 3WMR A 1 299 UNP Q76KY6 Q76KY6_STRHA 1 299 DBREF 3WMR B 1 299 UNP Q76KY6 Q76KY6_STRHA 1 299 DBREF 3WMR C 1 299 UNP Q76KY6 Q76KY6_STRHA 1 299 SEQADV 3WMR MET A -15 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ASN A -14 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -13 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR LYS A -12 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR VAL A -11 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -10 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -9 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -8 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -7 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -6 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A -5 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ILE A -4 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLU A -3 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLY A -2 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ARG A -1 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS A 0 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR MET B -15 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ASN B -14 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -13 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR LYS B -12 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR VAL B -11 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -10 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -9 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -8 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -7 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -6 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B -5 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ILE B -4 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLU B -3 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLY B -2 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ARG B -1 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS B 0 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR MET C -15 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ASN C -14 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -13 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR LYS C -12 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR VAL C -11 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -10 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -9 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -8 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -7 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -6 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C -5 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ILE C -4 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLU C -3 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR GLY C -2 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR ARG C -1 UNP Q76KY6 EXPRESSION TAG SEQADV 3WMR HIS C 0 UNP Q76KY6 EXPRESSION TAG SEQRES 1 A 315 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 315 GLY ARG HIS MET SER LYS PRO PRO SER ALA LYS GLY THR SEQRES 3 A 315 VAL PRO PHE GLY GLN TYR ARG THR TRP TYR ARG VAL THR SEQRES 4 A 315 GLY ASP LEU HIS SER GLY LYS PRO PRO VAL VAL LEU LEU SEQRES 5 A 315 HIS GLY GLY PRO GLY SER THR HIS ASP TYR LEU LEU ALA SEQRES 6 A 315 MET THR SER LEU THR GLU ALA GLY TRP PRO VAL VAL HIS SEQRES 7 A 315 TYR ASP GLN LEU GLY ASN GLY GLY SER THR HIS LEU PRO SEQRES 8 A 315 GLU LYS GLY GLU ASP PHE TRP THR VAL GLN LEU PHE GLU SEQRES 9 A 315 ASP GLU LEU ASP ASN LEU LEU ASN GLN LEU GLY ILE ALA SEQRES 10 A 315 GLY ASP TYR VAL LEU PHE GLY GLN SER TRP GLY GLY MET SEQRES 11 A 315 LEU GLY SER VAL HIS ALA ALA ARG ARG PRO ALA GLY LEU SEQRES 12 A 315 ARG GLY LEU VAL VAL ALA ASN ALA PRO ALA SER MET LYS SEQRES 13 A 315 ILE TRP LEU GLN GLU MET ALA ARG LEU ARG ALA LEU LEU SEQRES 14 A 315 PRO PRO ASP VAL GLN GLU THR LEU LEU LYS HIS GLU ALA SEQRES 15 A 315 ALA ARG THR THR ASP THR GLU GLU TYR PHE HIS ALA MET SEQRES 16 A 315 ARG ALA PHE TYR ASP ARG HIS VAL CYS ARG ILE VAL PRO SEQRES 17 A 315 TRP PRO ARG ASP PHE ALA ALA THR PHE MET GLU ILE TYR SEQRES 18 A 315 ASN ASP PRO THR VAL TYR THR THR MET ASN GLY PRO ASN SEQRES 19 A 315 GLU PHE HIS VAL ILE GLY THR LEU ARG ASP TRP SER VAL SEQRES 20 A 315 GLU ASP CYS LEU PRO ASP ILE GLN VAL PRO THR MET VAL SEQRES 21 A 315 LEU ILE GLY ARG HIS ASP GLU ALA THR PRO ALA THR VAL SEQRES 22 A 315 LYS PRO PHE LEU ASP LEU VAL PRO ASP VAL ARG TYR GLU SEQRES 23 A 315 VAL LEU GLU ASN SER SER HIS VAL PRO HIS LEU GLU GLU SEQRES 24 A 315 PRO GLU ARG PHE HIS GLU VAL MET ILE ASP TYR LEU GLU SEQRES 25 A 315 SER LEU VAL SEQRES 1 B 315 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 B 315 GLY ARG HIS MET SER LYS PRO PRO SER ALA LYS GLY THR SEQRES 3 B 315 VAL PRO PHE GLY GLN TYR ARG THR TRP TYR ARG VAL THR SEQRES 4 B 315 GLY ASP LEU HIS SER GLY LYS PRO PRO VAL VAL LEU LEU SEQRES 5 B 315 HIS GLY GLY PRO GLY SER THR HIS ASP TYR LEU LEU ALA SEQRES 6 B 315 MET THR SER LEU THR GLU ALA GLY TRP PRO VAL VAL HIS SEQRES 7 B 315 TYR ASP GLN LEU GLY ASN GLY GLY SER THR HIS LEU PRO SEQRES 8 B 315 GLU LYS GLY GLU ASP PHE TRP THR VAL GLN LEU PHE GLU SEQRES 9 B 315 ASP GLU LEU ASP ASN LEU LEU ASN GLN LEU GLY ILE ALA SEQRES 10 B 315 GLY ASP TYR VAL LEU PHE GLY GLN SER TRP GLY GLY MET SEQRES 11 B 315 LEU GLY SER VAL HIS ALA ALA ARG ARG PRO ALA GLY LEU SEQRES 12 B 315 ARG GLY LEU VAL VAL ALA ASN ALA PRO ALA SER MET LYS SEQRES 13 B 315 ILE TRP LEU GLN GLU MET ALA ARG LEU ARG ALA LEU LEU SEQRES 14 B 315 PRO PRO ASP VAL GLN GLU THR LEU LEU LYS HIS GLU ALA SEQRES 15 B 315 ALA ARG THR THR ASP THR GLU GLU TYR PHE HIS ALA MET SEQRES 16 B 315 ARG ALA PHE TYR ASP ARG HIS VAL CYS ARG ILE VAL PRO SEQRES 17 B 315 TRP PRO ARG ASP PHE ALA ALA THR PHE MET GLU ILE TYR SEQRES 18 B 315 ASN ASP PRO THR VAL TYR THR THR MET ASN GLY PRO ASN SEQRES 19 B 315 GLU PHE HIS VAL ILE GLY THR LEU ARG ASP TRP SER VAL SEQRES 20 B 315 GLU ASP CYS LEU PRO ASP ILE GLN VAL PRO THR MET VAL SEQRES 21 B 315 LEU ILE GLY ARG HIS ASP GLU ALA THR PRO ALA THR VAL SEQRES 22 B 315 LYS PRO PHE LEU ASP LEU VAL PRO ASP VAL ARG TYR GLU SEQRES 23 B 315 VAL LEU GLU ASN SER SER HIS VAL PRO HIS LEU GLU GLU SEQRES 24 B 315 PRO GLU ARG PHE HIS GLU VAL MET ILE ASP TYR LEU GLU SEQRES 25 B 315 SER LEU VAL SEQRES 1 C 315 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 C 315 GLY ARG HIS MET SER LYS PRO PRO SER ALA LYS GLY THR SEQRES 3 C 315 VAL PRO PHE GLY GLN TYR ARG THR TRP TYR ARG VAL THR SEQRES 4 C 315 GLY ASP LEU HIS SER GLY LYS PRO PRO VAL VAL LEU LEU SEQRES 5 C 315 HIS GLY GLY PRO GLY SER THR HIS ASP TYR LEU LEU ALA SEQRES 6 C 315 MET THR SER LEU THR GLU ALA GLY TRP PRO VAL VAL HIS SEQRES 7 C 315 TYR ASP GLN LEU GLY ASN GLY GLY SER THR HIS LEU PRO SEQRES 8 C 315 GLU LYS GLY GLU ASP PHE TRP THR VAL GLN LEU PHE GLU SEQRES 9 C 315 ASP GLU LEU ASP ASN LEU LEU ASN GLN LEU GLY ILE ALA SEQRES 10 C 315 GLY ASP TYR VAL LEU PHE GLY GLN SER TRP GLY GLY MET SEQRES 11 C 315 LEU GLY SER VAL HIS ALA ALA ARG ARG PRO ALA GLY LEU SEQRES 12 C 315 ARG GLY LEU VAL VAL ALA ASN ALA PRO ALA SER MET LYS SEQRES 13 C 315 ILE TRP LEU GLN GLU MET ALA ARG LEU ARG ALA LEU LEU SEQRES 14 C 315 PRO PRO ASP VAL GLN GLU THR LEU LEU LYS HIS GLU ALA SEQRES 15 C 315 ALA ARG THR THR ASP THR GLU GLU TYR PHE HIS ALA MET SEQRES 16 C 315 ARG ALA PHE TYR ASP ARG HIS VAL CYS ARG ILE VAL PRO SEQRES 17 C 315 TRP PRO ARG ASP PHE ALA ALA THR PHE MET GLU ILE TYR SEQRES 18 C 315 ASN ASP PRO THR VAL TYR THR THR MET ASN GLY PRO ASN SEQRES 19 C 315 GLU PHE HIS VAL ILE GLY THR LEU ARG ASP TRP SER VAL SEQRES 20 C 315 GLU ASP CYS LEU PRO ASP ILE GLN VAL PRO THR MET VAL SEQRES 21 C 315 LEU ILE GLY ARG HIS ASP GLU ALA THR PRO ALA THR VAL SEQRES 22 C 315 LYS PRO PHE LEU ASP LEU VAL PRO ASP VAL ARG TYR GLU SEQRES 23 C 315 VAL LEU GLU ASN SER SER HIS VAL PRO HIS LEU GLU GLU SEQRES 24 C 315 PRO GLU ARG PHE HIS GLU VAL MET ILE ASP TYR LEU GLU SEQRES 25 C 315 SER LEU VAL HET GOL A 401 6 HET P4G A 402 11 HET GOL B 400 6 HET GOL B 401 6 HET P4G B 402 11 HETNAM GOL GLYCEROL HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 P4G 2(C8 H18 O3) FORMUL 9 HOH *504(H2 O) HELIX 1 1 HIS A 44 GLY A 57 5 14 HELIX 2 2 THR A 83 LEU A 98 1 16 HELIX 3 3 SER A 110 ARG A 122 1 13 HELIX 4 4 SER A 138 ALA A 151 1 14 HELIX 5 5 PRO A 154 ARG A 168 1 15 HELIX 6 6 THR A 172 VAL A 187 1 16 HELIX 7 7 PRO A 194 ASP A 207 1 14 HELIX 8 8 PRO A 208 ASN A 215 1 8 HELIX 9 9 VAL A 231 ILE A 238 5 8 HELIX 10 10 THR A 253 VAL A 264 1 12 HELIX 11 11 VAL A 278 GLU A 283 1 6 HELIX 12 12 GLU A 283 SER A 297 1 15 HELIX 13 13 HIS B 44 GLY B 57 5 14 HELIX 14 14 THR B 83 LEU B 98 1 16 HELIX 15 15 SER B 110 ARG B 122 1 13 HELIX 16 16 SER B 138 LEU B 152 1 15 HELIX 17 17 PRO B 154 ARG B 168 1 15 HELIX 18 18 THR B 172 VAL B 187 1 16 HELIX 19 19 PRO B 194 ASP B 207 1 14 HELIX 20 20 PRO B 208 ASN B 215 1 8 HELIX 21 21 VAL B 231 ILE B 238 5 8 HELIX 22 22 THR B 253 VAL B 264 1 12 HELIX 23 23 VAL B 278 GLU B 283 1 6 HELIX 24 24 GLU B 283 SER B 297 1 15 HELIX 25 25 HIS C 44 GLY C 57 5 14 HELIX 26 26 THR C 83 LEU C 98 1 16 HELIX 27 27 SER C 110 ARG C 122 1 13 HELIX 28 28 SER C 138 ALA C 151 1 14 HELIX 29 29 PRO C 154 ALA C 167 1 14 HELIX 30 30 THR C 172 VAL C 187 1 16 HELIX 31 31 PRO C 194 ASP C 207 1 14 HELIX 32 32 PRO C 208 ASN C 215 1 8 HELIX 33 33 VAL C 231 ILE C 238 5 8 HELIX 34 34 THR C 253 VAL C 264 1 12 HELIX 35 35 VAL C 278 GLU C 283 1 6 HELIX 36 36 GLU C 283 LEU C 298 1 16 SHEET 1 A 8 ALA A 7 PHE A 13 0 SHEET 2 A 8 TYR A 16 THR A 23 -1 O TYR A 16 N PHE A 13 SHEET 3 A 8 VAL A 60 ASP A 64 -1 O VAL A 60 N THR A 23 SHEET 4 A 8 VAL A 33 LEU A 36 1 N LEU A 35 O VAL A 61 SHEET 5 A 8 TYR A 104 GLN A 109 1 O PHE A 107 N LEU A 36 SHEET 6 A 8 LEU A 127 ALA A 133 1 O VAL A 131 N LEU A 106 SHEET 7 A 8 THR A 242 GLY A 247 1 O MET A 243 N VAL A 132 SHEET 8 A 8 VAL A 267 LEU A 272 1 O ARG A 268 N VAL A 244 SHEET 1 B 8 ALA B 7 PHE B 13 0 SHEET 2 B 8 TYR B 16 THR B 23 -1 O VAL B 22 N ALA B 7 SHEET 3 B 8 VAL B 60 ASP B 64 -1 O VAL B 60 N THR B 23 SHEET 4 B 8 VAL B 33 LEU B 36 1 N VAL B 33 O VAL B 61 SHEET 5 B 8 TYR B 104 GLN B 109 1 O VAL B 105 N VAL B 34 SHEET 6 B 8 LEU B 127 ALA B 133 1 O VAL B 131 N GLY B 108 SHEET 7 B 8 THR B 242 GLY B 247 1 O MET B 243 N VAL B 132 SHEET 8 B 8 VAL B 267 LEU B 272 1 O ARG B 268 N VAL B 244 SHEET 1 C 8 ALA C 7 PHE C 13 0 SHEET 2 C 8 TYR C 16 THR C 23 -1 O TYR C 16 N PHE C 13 SHEET 3 C 8 VAL C 60 TYR C 63 -1 O VAL C 60 N THR C 23 SHEET 4 C 8 VAL C 33 LEU C 36 1 N LEU C 35 O VAL C 61 SHEET 5 C 8 TYR C 104 GLN C 109 1 O VAL C 105 N VAL C 34 SHEET 6 C 8 LEU C 127 ALA C 133 1 O VAL C 131 N GLY C 108 SHEET 7 C 8 THR C 242 GLY C 247 1 O MET C 243 N VAL C 132 SHEET 8 C 8 VAL C 267 LEU C 272 1 O ARG C 268 N VAL C 244 CISPEP 1 GLY A 39 PRO A 40 0 -4.03 CISPEP 2 VAL A 191 PRO A 192 0 -3.73 CISPEP 3 GLY B 39 PRO B 40 0 -2.06 CISPEP 4 VAL B 191 PRO B 192 0 3.81 CISPEP 5 GLY C 39 PRO C 40 0 -2.48 CISPEP 6 VAL C 191 PRO C 192 0 0.89 SITE 1 AC1 10 GLY A 102 ASP A 103 ALA A 125 GLY A 126 SITE 2 AC1 10 LEU A 127 ARG A 128 HOH A 578 HOH A 613 SITE 3 AC1 10 HOH A 651 ALA B 151 SITE 1 AC2 4 THR A 225 TRP A 229 SER A 230 HOH A 638 SITE 1 AC3 8 THR B 242 ASP B 266 VAL B 267 ARG B 268 SITE 2 AC3 8 TYR B 294 SER B 297 ARG C 248 GLU C 273 SITE 1 AC4 7 ARG B 150 PHE B 220 HIS B 221 HOH B 633 SITE 2 AC4 7 MET C 202 ASN C 206 HOH C 392 SITE 1 AC5 4 VAL B 84 TRP B 229 SER B 230 ASP B 233 CRYST1 52.870 72.620 75.450 114.02 98.39 98.50 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018914 0.002827 0.004481 0.00000 SCALE2 0.000000 0.013923 0.006785 0.00000 SCALE3 0.000000 0.000000 0.014903 0.00000