HEADER SUGAR BINDING PROTEIN 27-NOV-13 3WMV TITLE THE STRUCTURE OF AN ANTI-CANCER LECTIN MYTILEC WITH LIGAND FROM THE TITLE 2 MUSSEL MYTILUS GALLOPROVINCIALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYTILEC; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYTILUS GALLOPROVINCIALIS; SOURCE 3 ORGANISM_COMMON: MEDITERRANEAN MUSSEL; SOURCE 4 ORGANISM_TAXID: 29158; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUGAR BINDING PROTEIN, LECTIN, CARBOHYDRATE EXPDTA X-RAY DIFFRACTION AUTHOR D.TERADA,F.KAWAI,H.NOGUCHI,S.UNZAI,S.-Y.PARK,Y.OZEKI,J.R.H.TAME REVDAT 4 20-MAR-24 3WMV 1 HETSYN REVDAT 3 29-JUL-20 3WMV 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 SITE ATOM REVDAT 2 07-JUN-17 3WMV 1 JRNL REVDAT 1 03-DEC-14 3WMV 0 JRNL AUTH D.TERADA,F.KAWAI,H.NOGUCHI,S.UNZAI,I.HASAN,Y.FUJII, JRNL AUTH 2 S.-Y.PARK,Y.OZEKI,J.R.H.TAME JRNL TITL CRYSTAL STRUCTURE OF MYTILEC, A GALACTOSE-BINDING LECTIN JRNL TITL 2 FROM THE MUSSEL MYTILUS GALLOPROVINCIALIS WITH CYTOTOXICITY JRNL TITL 3 AGAINST CERTAIN CANCER CELL TYPES JRNL REF SCI REP V. 6 28344 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27321048 JRNL DOI 10.1038/SREP28344 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 140043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7384 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 555 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2378 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.023 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.024 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.013 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2565 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2433 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3475 ; 2.186 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5629 ; 1.338 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 7.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;30.498 ;23.793 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;12.317 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;22.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.558 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2846 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 610 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4998 ; 7.016 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 113 ;23.545 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5109 ; 6.086 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-13. REMARK 100 THE DEPOSITION ID IS D_1000096534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUMU THIOCYANATE, BIS-TRIS REMARK 280 PROPANE, PEG3350, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.13800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.10750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.13800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.10750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 37 CD GLU A 37 OE1 0.077 REMARK 500 GLU A 37 CD GLU A 37 OE2 0.111 REMARK 500 VAL A 149 CB VAL A 149 CG1 0.169 REMARK 500 VAL A 149 C VAL A 149 O 0.118 REMARK 500 LYS B 6 CE LYS B 6 NZ 0.152 REMARK 500 ARG B 86 CG ARG B 86 CD -0.159 REMARK 500 GLU B 118 CD GLU B 118 OE1 -0.143 REMARK 500 VAL B 149 CB VAL B 149 CG1 0.137 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 86 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 91 CG - SD - CE ANGL. DEV. = -11.2 DEGREES REMARK 500 THR A 113 OG1 - CB - CG2 ANGL. DEV. = -18.8 DEGREES REMARK 500 VAL A 149 CA - CB - CG1 ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 38 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 86 CG - CD - NE ANGL. DEV. = 18.2 DEGREES REMARK 500 GLU B 118 OE1 - CD - OE2 ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 48 -112.99 59.77 REMARK 500 GLU A 118 4.21 81.12 REMARK 500 ASN A 140 99.34 -165.25 REMARK 500 GLU B 48 -112.10 59.98 REMARK 500 GLU B 118 2.12 81.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 144 0.08 SIDE CHAIN REMARK 500 ARG B 144 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WMU RELATED DB: PDB DBREF 3WMV A 1 149 UNP B3EWR1 LEC_MYTGA 1 149 DBREF 3WMV B 1 149 UNP B3EWR1 LEC_MYTGA 1 149 SEQADV 3WMV GLY A -3 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV SER A -2 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV HIS A -1 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV MET A 0 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV ALA A 1 UNP B3EWR1 THR 1 ENGINEERED MUTATION SEQADV 3WMV GLY B -3 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV SER B -2 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV HIS B -1 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV MET B 0 UNP B3EWR1 EXPRESSION TAG SEQADV 3WMV ALA B 1 UNP B3EWR1 THR 1 ENGINEERED MUTATION SEQRES 1 A 153 GLY SER HIS MET ALA THR PHE LEU ILE LYS HIS LYS ALA SEQRES 2 A 153 SER GLY LYS PHE LEU HIS PRO LYS GLY GLY SER SER ASN SEQRES 3 A 153 PRO ALA ASN ASP THR ASN LEU VAL LEU HIS SER ASP ILE SEQRES 4 A 153 HIS GLU ARG MET TYR PHE GLN PHE ASP VAL VAL ASP GLU SEQRES 5 A 153 ARG TRP GLY TYR ILE LYS HIS ALA ALA SER GLY LYS ILE SEQRES 6 A 153 VAL HIS PRO LEU GLY GLY LYS ALA ASP PRO PRO ASN GLU SEQRES 7 A 153 THR LYS LEU VAL LEU HIS GLN ASP ARG HIS ASP ARG ALA SEQRES 8 A 153 LEU PHE ALA MET ASP PHE PHE ASN ASP ASN ILE ILE HIS SEQRES 9 A 153 LYS ALA GLY LYS TYR VAL HIS PRO LYS GLY GLY SER THR SEQRES 10 A 153 ASN PRO PRO ASN GLU THR LEU THR VAL MET HIS GLY ASP SEQRES 11 A 153 LYS HIS GLY ALA MET GLU PHE ILE PHE VAL SER PRO LYS SEQRES 12 A 153 ASN LYS ASP LYS ARG VAL LEU VAL TYR VAL SEQRES 1 B 153 GLY SER HIS MET ALA THR PHE LEU ILE LYS HIS LYS ALA SEQRES 2 B 153 SER GLY LYS PHE LEU HIS PRO LYS GLY GLY SER SER ASN SEQRES 3 B 153 PRO ALA ASN ASP THR ASN LEU VAL LEU HIS SER ASP ILE SEQRES 4 B 153 HIS GLU ARG MET TYR PHE GLN PHE ASP VAL VAL ASP GLU SEQRES 5 B 153 ARG TRP GLY TYR ILE LYS HIS ALA ALA SER GLY LYS ILE SEQRES 6 B 153 VAL HIS PRO LEU GLY GLY LYS ALA ASP PRO PRO ASN GLU SEQRES 7 B 153 THR LYS LEU VAL LEU HIS GLN ASP ARG HIS ASP ARG ALA SEQRES 8 B 153 LEU PHE ALA MET ASP PHE PHE ASN ASP ASN ILE ILE HIS SEQRES 9 B 153 LYS ALA GLY LYS TYR VAL HIS PRO LYS GLY GLY SER THR SEQRES 10 B 153 ASN PRO PRO ASN GLU THR LEU THR VAL MET HIS GLY ASP SEQRES 11 B 153 LYS HIS GLY ALA MET GLU PHE ILE PHE VAL SER PRO LYS SEQRES 12 B 153 ASN LYS ASP LYS ARG VAL LEU VAL TYR VAL HET A2G A 201 15 HET A2G A 202 15 HET A2G A 203 15 HET A2G B 201 15 HET A2G B 202 15 HET A2G B 203 15 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 3 A2G 6(C8 H15 N O6) FORMUL 9 HOH *299(H2 O) HELIX 1 1 HIS A 36 MET A 39 5 4 HELIX 2 2 HIS A 84 ALA A 87 5 4 HELIX 3 3 HIS A 128 MET A 131 5 4 HELIX 4 4 HIS B 36 MET B 39 5 4 HELIX 5 5 HIS B 84 ALA B 87 5 4 HELIX 6 6 HIS B 128 MET B 131 5 4 SHEET 1 A 3 LEU A 4 HIS A 7 0 SHEET 2 A 3 PHE A 133 SER A 137 -1 O ILE A 134 N LYS A 6 SHEET 3 A 3 ASN A 140 ARG A 144 -1 O LYS A 143 N SER A 137 SHEET 1 B 4 PHE A 13 PRO A 16 0 SHEET 2 B 4 THR A 27 HIS A 32 -1 O VAL A 30 N HIS A 15 SHEET 3 B 4 LEU A 77 HIS A 80 -1 O LEU A 77 N LEU A 29 SHEET 4 B 4 ILE A 61 PRO A 64 -1 N HIS A 63 O VAL A 78 SHEET 1 C 4 PHE A 13 PRO A 16 0 SHEET 2 C 4 THR A 27 HIS A 32 -1 O VAL A 30 N HIS A 15 SHEET 3 C 4 THR A 119 HIS A 124 -1 O THR A 121 N LEU A 29 SHEET 4 C 4 TYR A 105 PRO A 108 -1 N HIS A 107 O VAL A 122 SHEET 1 D 4 PHE A 41 ASP A 47 0 SHEET 2 D 4 TRP A 50 HIS A 55 -1 O TRP A 50 N VAL A 46 SHEET 3 D 4 PHE A 89 ASP A 92 -1 O PHE A 89 N GLY A 51 SHEET 4 D 4 ASN A 97 HIS A 100 -1 O ILE A 99 N ALA A 90 SHEET 1 E 3 LEU B 4 HIS B 7 0 SHEET 2 E 3 PHE B 133 SER B 137 -1 O ILE B 134 N LYS B 6 SHEET 3 E 3 ASN B 140 ARG B 144 -1 O LYS B 143 N SER B 137 SHEET 1 F 4 PHE B 13 PRO B 16 0 SHEET 2 F 4 THR B 27 HIS B 32 -1 O VAL B 30 N HIS B 15 SHEET 3 F 4 LEU B 77 HIS B 80 -1 O LEU B 77 N LEU B 29 SHEET 4 F 4 ILE B 61 PRO B 64 -1 N HIS B 63 O VAL B 78 SHEET 1 G 4 PHE B 13 PRO B 16 0 SHEET 2 G 4 THR B 27 HIS B 32 -1 O VAL B 30 N HIS B 15 SHEET 3 G 4 THR B 119 HIS B 124 -1 O THR B 119 N LEU B 31 SHEET 4 G 4 TYR B 105 PRO B 108 -1 N HIS B 107 O VAL B 122 SHEET 1 H 2 PHE B 41 ASP B 47 0 SHEET 2 H 2 TRP B 50 HIS B 55 -1 O LYS B 54 N GLN B 42 SHEET 1 I 2 PHE B 89 ASP B 92 0 SHEET 2 I 2 ASN B 97 HIS B 100 -1 O ILE B 99 N ALA B 90 CRYST1 80.276 64.215 74.282 90.00 121.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012457 0.000000 0.007638 0.00000 SCALE2 0.000000 0.015573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015791 0.00000