HEADER TRANSPORT PROTEIN 17-JAN-14 3WPT TITLE CRYSTAL STRUCTURE OF CLOSED DIMER OF HUMAN IMPORTIN-ALPHA1 (RCH1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMPORTIN SUBUNIT ALPHA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 75-497; COMPND 5 SYNONYM: RCH1, KARYOPHERIN SUBUNIT ALPHA-2, RAG COHORT PROTEIN 1, COMPND 6 SRP1-ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KPNA2, RCH1, SRP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARM REPEAT, ALL ALPHA PROTEIN, ARMADILLO REPEAT, CLOSED DIMER, KEYWDS 2 NUCLEAR TRANSPORT, IMPORTIN-BETA, NLS-CARRING PROTEINS, TRANSPORT KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.MIYATAKE,A.SANJOH,G.MATSUDA,Y.TATSUMI,N.DOHMAE,Y.AIDA REVDAT 2 08-NOV-23 3WPT 1 REMARK REVDAT 1 21-JAN-15 3WPT 0 JRNL AUTH H.MIYATAKE JRNL TITL CRYSTAL STRUCTURE OF CLOSED DIMER OF HUMAN IMPORTIN-ALPHA1 JRNL TITL 2 (RCH1) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.490 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 40606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5125 - 6.3317 0.98 3029 148 0.1692 0.1808 REMARK 3 2 6.3317 - 5.0276 1.00 2899 158 0.2006 0.2446 REMARK 3 3 5.0276 - 4.3927 1.00 2856 157 0.1484 0.1534 REMARK 3 4 4.3927 - 3.9913 0.99 2831 155 0.1520 0.1992 REMARK 3 5 3.9913 - 3.7053 0.98 2780 157 0.1637 0.1859 REMARK 3 6 3.7053 - 3.4869 0.99 2796 141 0.1956 0.2350 REMARK 3 7 3.4869 - 3.3124 0.98 2753 145 0.2173 0.2327 REMARK 3 8 3.3124 - 3.1682 0.98 2775 149 0.2237 0.2561 REMARK 3 9 3.1682 - 3.0463 0.97 2732 141 0.2145 0.2638 REMARK 3 10 3.0463 - 2.9412 0.96 2675 154 0.2221 0.2517 REMARK 3 11 2.9412 - 2.8492 0.96 2699 140 0.2307 0.2829 REMARK 3 12 2.8492 - 2.7678 0.95 2656 132 0.2370 0.2542 REMARK 3 13 2.7678 - 2.6949 0.93 2616 112 0.2394 0.2771 REMARK 3 14 2.6949 - 2.6292 0.89 2510 112 0.2920 0.3129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6646 REMARK 3 ANGLE : 0.781 9015 REMARK 3 CHIRALITY : 0.029 1087 REMARK 3 PLANARITY : 0.003 1141 REMARK 3 DIHEDRAL : 15.009 2444 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 75 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.5671 80.6808 71.8318 REMARK 3 T TENSOR REMARK 3 T11: 0.5551 T22: 0.4828 REMARK 3 T33: 0.3787 T12: -0.0704 REMARK 3 T13: -0.0736 T23: 0.1080 REMARK 3 L TENSOR REMARK 3 L11: 3.1097 L22: 2.9057 REMARK 3 L33: 2.7233 L12: 0.3220 REMARK 3 L13: -0.7146 L23: -0.5869 REMARK 3 S TENSOR REMARK 3 S11: 0.1261 S12: -0.6255 S13: -0.3515 REMARK 3 S21: 0.3622 S22: -0.3663 S23: -0.4783 REMARK 3 S31: 0.3999 S32: 0.1600 S33: 0.1863 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 176 THROUGH 362 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0228 79.1666 49.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.3780 REMARK 3 T33: 0.3879 T12: -0.0098 REMARK 3 T13: 0.0341 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 1.9377 L22: 1.2490 REMARK 3 L33: 2.7424 L12: 1.1636 REMARK 3 L13: 1.9895 L23: 1.7423 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: -0.2733 S13: 0.1402 REMARK 3 S21: 0.0740 S22: -0.0861 S23: 0.0743 REMARK 3 S31: -0.0296 S32: -0.0788 S33: 0.0211 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 363 THROUGH 496 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7500 53.1540 29.0895 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.3718 REMARK 3 T33: 0.4160 T12: -0.0608 REMARK 3 T13: 0.0343 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.9985 L22: 3.7960 REMARK 3 L33: 1.5630 L12: -0.5146 REMARK 3 L13: 0.3508 L23: -0.5647 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: 0.1141 S13: -0.2555 REMARK 3 S21: -0.1898 S22: 0.1463 S23: 0.3429 REMARK 3 S31: 0.3295 S32: -0.2416 S33: -0.0646 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 75 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5456 48.3870 53.5381 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.3213 REMARK 3 T33: 0.3537 T12: -0.0340 REMARK 3 T13: 0.0495 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 3.1702 L22: 1.2122 REMARK 3 L33: 1.6366 L12: 0.0103 REMARK 3 L13: -0.9662 L23: 0.7141 REMARK 3 S TENSOR REMARK 3 S11: 0.1011 S12: -0.1166 S13: 0.1631 REMARK 3 S21: -0.0662 S22: -0.1018 S23: -0.1150 REMARK 3 S31: -0.2717 S32: 0.1668 S33: -0.0091 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 203 THROUGH 348 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.8016 54.1676 49.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.3439 REMARK 3 T33: 0.3744 T12: 0.0127 REMARK 3 T13: 0.0063 T23: 0.0657 REMARK 3 L TENSOR REMARK 3 L11: 3.5399 L22: 2.6239 REMARK 3 L33: 1.1763 L12: 1.8252 REMARK 3 L13: 0.0159 L23: -0.6082 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: -0.2367 S13: -0.3969 REMARK 3 S21: 0.0249 S22: 0.0596 S23: -0.0301 REMARK 3 S31: 0.0455 S32: -0.1978 S33: 0.0063 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 349 THROUGH 497 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5195 83.9258 50.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.3268 T22: 0.3191 REMARK 3 T33: 0.3222 T12: 0.0286 REMARK 3 T13: -0.0204 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 1.4600 L22: 3.9265 REMARK 3 L33: 1.2853 L12: -0.0920 REMARK 3 L13: -0.4640 L23: 1.3962 REMARK 3 S TENSOR REMARK 3 S11: 0.1148 S12: -0.1219 S13: -0.0422 REMARK 3 S21: 0.0983 S22: 0.0373 S23: -0.5326 REMARK 3 S31: -0.0950 S32: 0.1162 S33: -0.1411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000096640. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.629 REMARK 200 RESOLUTION RANGE LOW (A) : 46.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 31.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39100 REMARK 200 R SYM FOR SHELL (I) : 0.39100 REMARK 200 FOR SHELL : 4.860 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.1_1168 REMARK 200 STARTING MODEL: 2JDQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, 100MM AMMONIUM SULFATE, 10MM REMARK 280 MGCL, 15-20%(W/V) PEG8000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.64400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.64950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.64950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.96600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.64950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.64950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.32200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.64950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.64950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 105.96600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.64950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.64950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.32200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.64400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 497 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H21 PEG A 509 H22 PEG B 503 1.13 REMARK 500 O HOH B 643 O HOH B 652 2.02 REMARK 500 O HOH A 660 O HOH A 671 2.05 REMARK 500 O HOH A 620 O HOH A 623 2.14 REMARK 500 OD2 ASP A 160 O HOH A 628 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 108 88.10 59.70 REMARK 500 THR A 151 150.72 -48.76 REMARK 500 ASN A 239 165.27 67.18 REMARK 500 ASN A 241 65.86 60.11 REMARK 500 LYS A 432 58.11 -94.55 REMARK 500 TYR A 495 -67.63 61.28 REMARK 500 ARG B 130 73.61 -68.89 REMARK 500 CYS B 133 85.45 -153.41 REMARK 500 PRO B 216 -73.54 -52.23 REMARK 500 ASN B 239 156.65 66.98 REMARK 500 LYS B 240 90.97 -163.13 REMARK 500 ASN B 241 66.17 -170.01 REMARK 500 LYS B 432 53.59 -99.98 REMARK 500 GLU B 456 38.80 -142.26 REMARK 500 PHE B 496 33.00 -140.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WP7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HIV-1 VPR C-TERMINAL DOMAIN AND IMPORTIN- REMARK 900 ALPHA2 COMPLEX REMARK 900 RELATED ID: 1IAL RELATED DB: PDB REMARK 900 RELATED ID: 1BK5 RELATED DB: PDB REMARK 900 RELATED ID: 2JDQ RELATED DB: PDB DBREF 3WPT A 75 497 UNP P52292 IMA1_HUMAN 75 497 DBREF 3WPT B 75 497 UNP P52292 IMA1_HUMAN 75 497 SEQRES 1 A 423 ASN TRP SER VAL ASP ASP ILE VAL LYS GLY ILE ASN SER SEQRES 2 A 423 SER ASN VAL GLU ASN GLN LEU GLN ALA THR GLN ALA ALA SEQRES 3 A 423 ARG LYS LEU LEU SER ARG GLU LYS GLN PRO PRO ILE ASP SEQRES 4 A 423 ASN ILE ILE ARG ALA GLY LEU ILE PRO LYS PHE VAL SER SEQRES 5 A 423 PHE LEU GLY ARG THR ASP CYS SER PRO ILE GLN PHE GLU SEQRES 6 A 423 SER ALA TRP ALA LEU THR ASN ILE ALA SER GLY THR SER SEQRES 7 A 423 GLU GLN THR LYS ALA VAL VAL ASP GLY GLY ALA ILE PRO SEQRES 8 A 423 ALA PHE ILE SER LEU LEU ALA SER PRO HIS ALA HIS ILE SEQRES 9 A 423 SER GLU GLN ALA VAL TRP ALA LEU GLY ASN ILE ALA GLY SEQRES 10 A 423 ASP GLY SER VAL PHE ARG ASP LEU VAL ILE LYS TYR GLY SEQRES 11 A 423 ALA VAL ASP PRO LEU LEU ALA LEU LEU ALA VAL PRO ASP SEQRES 12 A 423 MET SER SER LEU ALA CYS GLY TYR LEU ARG ASN LEU THR SEQRES 13 A 423 TRP THR LEU SER ASN LEU CYS ARG ASN LYS ASN PRO ALA SEQRES 14 A 423 PRO PRO ILE ASP ALA VAL GLU GLN ILE LEU PRO THR LEU SEQRES 15 A 423 VAL ARG LEU LEU HIS HIS ASP ASP PRO GLU VAL LEU ALA SEQRES 16 A 423 ASP THR CYS TRP ALA ILE SER TYR LEU THR ASP GLY PRO SEQRES 17 A 423 ASN GLU ARG ILE GLY MET VAL VAL LYS THR GLY VAL VAL SEQRES 18 A 423 PRO GLN LEU VAL LYS LEU LEU GLY ALA SER GLU LEU PRO SEQRES 19 A 423 ILE VAL THR PRO ALA LEU ARG ALA ILE GLY ASN ILE VAL SEQRES 20 A 423 THR GLY THR ASP GLU GLN THR GLN VAL VAL ILE ASP ALA SEQRES 21 A 423 GLY ALA LEU ALA VAL PHE PRO SER LEU LEU THR ASN PRO SEQRES 22 A 423 LYS THR ASN ILE GLN LYS GLU ALA THR TRP THR MET SER SEQRES 23 A 423 ASN ILE THR ALA GLY ARG GLN ASP GLN ILE GLN GLN VAL SEQRES 24 A 423 VAL ASN HIS GLY LEU VAL PRO PHE LEU VAL SER VAL LEU SEQRES 25 A 423 SER LYS ALA ASP PHE LYS THR GLN LYS GLU ALA VAL TRP SEQRES 26 A 423 ALA VAL THR ASN TYR THR SER GLY GLY THR VAL GLU GLN SEQRES 27 A 423 ILE VAL TYR LEU VAL HIS CYS GLY ILE ILE GLU PRO LEU SEQRES 28 A 423 MET ASN LEU LEU THR ALA LYS ASP THR LYS ILE ILE LEU SEQRES 29 A 423 VAL ILE LEU ASP ALA ILE SER ASN ILE PHE GLN ALA ALA SEQRES 30 A 423 GLU LYS LEU GLY GLU THR GLU LYS LEU SER ILE MET ILE SEQRES 31 A 423 GLU GLU CYS GLY GLY LEU ASP LYS ILE GLU ALA LEU GLN SEQRES 32 A 423 ASN HIS GLU ASN GLU SER VAL TYR LYS ALA SER LEU SER SEQRES 33 A 423 LEU ILE GLU LYS TYR PHE SER SEQRES 1 B 423 ASN TRP SER VAL ASP ASP ILE VAL LYS GLY ILE ASN SER SEQRES 2 B 423 SER ASN VAL GLU ASN GLN LEU GLN ALA THR GLN ALA ALA SEQRES 3 B 423 ARG LYS LEU LEU SER ARG GLU LYS GLN PRO PRO ILE ASP SEQRES 4 B 423 ASN ILE ILE ARG ALA GLY LEU ILE PRO LYS PHE VAL SER SEQRES 5 B 423 PHE LEU GLY ARG THR ASP CYS SER PRO ILE GLN PHE GLU SEQRES 6 B 423 SER ALA TRP ALA LEU THR ASN ILE ALA SER GLY THR SER SEQRES 7 B 423 GLU GLN THR LYS ALA VAL VAL ASP GLY GLY ALA ILE PRO SEQRES 8 B 423 ALA PHE ILE SER LEU LEU ALA SER PRO HIS ALA HIS ILE SEQRES 9 B 423 SER GLU GLN ALA VAL TRP ALA LEU GLY ASN ILE ALA GLY SEQRES 10 B 423 ASP GLY SER VAL PHE ARG ASP LEU VAL ILE LYS TYR GLY SEQRES 11 B 423 ALA VAL ASP PRO LEU LEU ALA LEU LEU ALA VAL PRO ASP SEQRES 12 B 423 MET SER SER LEU ALA CYS GLY TYR LEU ARG ASN LEU THR SEQRES 13 B 423 TRP THR LEU SER ASN LEU CYS ARG ASN LYS ASN PRO ALA SEQRES 14 B 423 PRO PRO ILE ASP ALA VAL GLU GLN ILE LEU PRO THR LEU SEQRES 15 B 423 VAL ARG LEU LEU HIS HIS ASP ASP PRO GLU VAL LEU ALA SEQRES 16 B 423 ASP THR CYS TRP ALA ILE SER TYR LEU THR ASP GLY PRO SEQRES 17 B 423 ASN GLU ARG ILE GLY MET VAL VAL LYS THR GLY VAL VAL SEQRES 18 B 423 PRO GLN LEU VAL LYS LEU LEU GLY ALA SER GLU LEU PRO SEQRES 19 B 423 ILE VAL THR PRO ALA LEU ARG ALA ILE GLY ASN ILE VAL SEQRES 20 B 423 THR GLY THR ASP GLU GLN THR GLN VAL VAL ILE ASP ALA SEQRES 21 B 423 GLY ALA LEU ALA VAL PHE PRO SER LEU LEU THR ASN PRO SEQRES 22 B 423 LYS THR ASN ILE GLN LYS GLU ALA THR TRP THR MET SER SEQRES 23 B 423 ASN ILE THR ALA GLY ARG GLN ASP GLN ILE GLN GLN VAL SEQRES 24 B 423 VAL ASN HIS GLY LEU VAL PRO PHE LEU VAL SER VAL LEU SEQRES 25 B 423 SER LYS ALA ASP PHE LYS THR GLN LYS GLU ALA VAL TRP SEQRES 26 B 423 ALA VAL THR ASN TYR THR SER GLY GLY THR VAL GLU GLN SEQRES 27 B 423 ILE VAL TYR LEU VAL HIS CYS GLY ILE ILE GLU PRO LEU SEQRES 28 B 423 MET ASN LEU LEU THR ALA LYS ASP THR LYS ILE ILE LEU SEQRES 29 B 423 VAL ILE LEU ASP ALA ILE SER ASN ILE PHE GLN ALA ALA SEQRES 30 B 423 GLU LYS LEU GLY GLU THR GLU LYS LEU SER ILE MET ILE SEQRES 31 B 423 GLU GLU CYS GLY GLY LEU ASP LYS ILE GLU ALA LEU GLN SEQRES 32 B 423 ASN HIS GLU ASN GLU SER VAL TYR LYS ALA SER LEU SER SEQRES 33 B 423 LEU ILE GLU LYS TYR PHE SER HET PEG A 501 17 HET PEG A 502 17 HET PEG A 503 17 HET PEG A 504 17 HET PEG A 505 17 HET PEG A 506 17 HET PEG A 507 17 HET PEG A 508 17 HET PEG A 509 17 HET PEG A 510 17 HET PEG A 511 17 HET PEG B 501 17 HET PEG B 502 17 HET PEG B 503 17 HET PEG B 504 17 HET PEG B 505 17 HET PEG B 506 17 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PEG 17(C4 H10 O3) FORMUL 20 HOH *199(H2 O) HELIX 1 1 SER A 77 SER A 87 1 11 HELIX 2 2 ASN A 89 ARG A 106 1 18 HELIX 3 3 PRO A 111 ALA A 118 1 8 HELIX 4 4 LEU A 120 LEU A 128 1 9 HELIX 5 5 CYS A 133 ALA A 148 1 16 HELIX 6 6 THR A 151 GLY A 161 1 11 HELIX 7 7 GLY A 162 SER A 169 1 8 HELIX 8 8 HIS A 175 ASP A 192 1 18 HELIX 9 9 GLY A 193 TYR A 203 1 11 HELIX 10 10 ALA A 205 LEU A 212 1 8 HELIX 11 11 ASP A 217 LEU A 221 5 5 HELIX 12 12 ALA A 222 LEU A 236 1 15 HELIX 13 13 PRO A 245 LEU A 260 1 16 HELIX 14 14 ASP A 264 THR A 279 1 16 HELIX 15 15 PRO A 282 THR A 292 1 11 HELIX 16 16 VAL A 294 LEU A 302 1 9 HELIX 17 17 GLU A 306 VAL A 321 1 16 HELIX 18 18 THR A 324 ALA A 334 1 11 HELIX 19 19 ALA A 336 ALA A 338 5 3 HELIX 20 20 VAL A 339 THR A 345 1 7 HELIX 21 21 LYS A 348 THR A 363 1 16 HELIX 22 22 ARG A 366 HIS A 376 1 11 HELIX 23 23 GLY A 377 ALA A 389 1 13 HELIX 24 24 ASP A 390 GLY A 408 1 19 HELIX 25 25 THR A 409 CYS A 419 1 11 HELIX 26 26 ILE A 421 LEU A 428 1 8 HELIX 27 27 LEU A 429 ALA A 431 5 3 HELIX 28 28 ASP A 433 LYS A 453 1 21 HELIX 29 29 GLU A 456 CYS A 467 1 12 HELIX 30 30 GLY A 468 ALA A 475 1 8 HELIX 31 31 LEU A 476 GLN A 477 5 2 HELIX 32 32 ASN A 478 GLU A 480 5 3 HELIX 33 33 ASN A 481 LYS A 494 1 14 HELIX 34 34 SER B 77 ASN B 86 1 10 HELIX 35 35 ASN B 89 ARG B 106 1 18 HELIX 36 36 PRO B 111 ARG B 117 1 7 HELIX 37 37 LEU B 120 LEU B 128 1 9 HELIX 38 38 CYS B 133 ALA B 148 1 16 HELIX 39 39 THR B 151 GLY B 161 1 11 HELIX 40 40 GLY B 162 LEU B 170 1 9 HELIX 41 41 LEU B 171 SER B 173 5 3 HELIX 42 42 HIS B 175 ASP B 192 1 18 HELIX 43 43 GLY B 193 TYR B 203 1 11 HELIX 44 44 ALA B 205 LEU B 212 1 8 HELIX 45 45 ALA B 222 ARG B 238 1 17 HELIX 46 46 PRO B 245 LEU B 260 1 16 HELIX 47 47 ASP B 264 THR B 279 1 16 HELIX 48 48 PRO B 282 LYS B 291 1 10 HELIX 49 49 VAL B 294 GLY B 303 1 10 HELIX 50 50 GLU B 306 VAL B 321 1 16 HELIX 51 51 THR B 324 ALA B 334 1 11 HELIX 52 52 GLY B 335 ALA B 338 5 4 HELIX 53 53 VAL B 339 LEU B 344 1 6 HELIX 54 54 LYS B 348 THR B 363 1 16 HELIX 55 55 ARG B 366 HIS B 376 1 11 HELIX 56 56 LEU B 378 LYS B 388 1 11 HELIX 57 57 ASP B 390 GLY B 408 1 19 HELIX 58 58 THR B 409 CYS B 419 1 11 HELIX 59 59 ILE B 421 LEU B 428 1 8 HELIX 60 60 LEU B 429 ALA B 431 5 3 HELIX 61 61 ASP B 433 LEU B 454 1 22 HELIX 62 62 GLU B 456 CYS B 467 1 12 HELIX 63 63 GLY B 468 ALA B 475 1 8 HELIX 64 64 ASN B 481 PHE B 496 1 16 CISPEP 1 LYS A 108 GLN A 109 0 -5.29 CISPEP 2 ASN A 241 PRO A 242 0 -1.91 CISPEP 3 ASN B 241 PRO B 242 0 3.79 SITE 1 AC1 1 GLU A 456 SITE 1 AC2 2 GLN A 367 VAL A 410 SITE 1 AC3 4 LYS A 388 ALA A 389 PHE A 391 GLN A 394 SITE 1 AC4 3 ARG A 227 PEG A 505 PHE B 391 SITE 1 AC5 8 GLY A 224 PEG A 504 HOH A 684 PHE B 391 SITE 2 AC5 8 THR B 430 ALA B 431 LYS B 432 HOH B 695 SITE 1 AC6 1 GLU A 306 SITE 1 AC7 3 ARG A 238 TRP A 273 TYR A 277 SITE 1 AC8 3 ASN A 241 SER B 152 PEG B 503 SITE 1 AC9 3 PHE A 391 LYS A 432 ARG B 227 SITE 1 BC1 4 LYS A 353 GLU A 354 TRP A 357 GLU A 396 SITE 1 BC2 2 ARG B 315 GLU B 396 SITE 1 BC3 2 SER A 152 LYS B 240 SITE 1 BC4 5 LYS A 240 PEG A 509 SER B 149 GLY B 150 SITE 2 BC4 5 SER B 152 SITE 1 BC5 3 VAL B 414 GLU B 456 LYS B 459 SITE 1 BC6 1 GLN B 371 SITE 1 BC7 1 VAL B 330 CRYST1 139.299 139.299 141.288 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007078 0.00000