HEADER HYDROLASE/CHAPERONE 24-JAN-14 3WQB TITLE CRYSTAL STRUCTURE OF AEROMONAS SOBRIA SERINE PROTEASE (ASP) AND THE TITLE 2 CHAPERONE (ORF2) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXTRACELLULAR SERINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: OPEN READING FRAME 2; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ORF2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS SOBRIA; SOURCE 3 ORGANISM_TAXID: 646; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSA19; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: AEROMONAS SOBRIA; SOURCE 11 ORGANISM_TAXID: 646; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PSA19 KEYWDS ASP, SERINE PROTEASE; ORF2, CHAPERONE, CALCIUM BINDING, EXTRACELLULAR KEYWDS 2 SPACE, HYDROLASE-CHAPERONE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.KOBAYASHI,T.YOSHIDA,T.MIYAKAWA,R.KATO,M.TASHIRO,H.YAMANAKA, AUTHOR 2 M.TANOKURA,H.TSUGE REVDAT 5 13-NOV-24 3WQB 1 REMARK REVDAT 4 08-NOV-23 3WQB 1 REMARK LINK REVDAT 3 25-DEC-19 3WQB 1 JRNL SEQADV REVDAT 2 22-NOV-17 3WQB 1 REMARK REVDAT 1 25-MAR-15 3WQB 0 JRNL AUTH H.KOBAYASHI,T.YOSHIDA,T.MIYAKAWA,M.TASHIRO,K.OKAMOTO, JRNL AUTH 2 H.YAMANAKA,M.TANOKURA,H.TSUGE JRNL TITL STRUCTURAL BASIS FOR ACTION OF THE EXTERNAL CHAPERONE FOR A JRNL TITL 2 PROPEPTIDE-DEFICIENT SERINE PROTEASE FROM AEROMONAS SOBRIA. JRNL REF J.BIOL.CHEM. V. 290 11130 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25784551 JRNL DOI 10.1074/JBC.M114.622852 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 130244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6544 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 466 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 392 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : -0.58000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : -0.29000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.903 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5297 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7203 ; 1.148 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 693 ; 6.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;38.402 ;24.873 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ;12.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 820 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4065 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3443 ; 0.791 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5508 ; 1.330 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1854 ; 2.109 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1695 ; 3.161 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5297 ; 0.866 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000096658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3HJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% PEG 3000, 0.05M HEPES, 0.05M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.20833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.41667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.81250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.02083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 8.60417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 598 REMARK 465 ARG A 599 REMARK 465 SER A 600 REMARK 465 GLN B -17 REMARK 465 GLU B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 GLN B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 THR B 5 REMARK 465 MET B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 10 REMARK 465 TYR B 11 REMARK 465 PRO B 24 REMARK 465 ASP B 25 REMARK 465 ASN B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 LYS B 30 REMARK 465 ARG B 31 REMARK 465 VAL B 32 REMARK 465 ALA B 33 REMARK 465 ARG B 34 REMARK 465 SER B 35 REMARK 465 LEU B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 LYS B 39 REMARK 465 VAL B 40 REMARK 465 PRO B 41 REMARK 465 GLN B 42 REMARK 465 GLN B 43 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 78 -151.86 -159.14 REMARK 500 ALA A 124 33.33 -148.09 REMARK 500 ASN A 128 -146.42 -153.52 REMARK 500 SER A 177 49.33 -82.53 REMARK 500 PHE A 253 -47.45 71.64 REMARK 500 GLU A 285 -103.22 -113.15 REMARK 500 THR A 288 -75.32 -103.17 REMARK 500 ALA A 292 -154.48 -122.61 REMARK 500 ASP A 323 74.04 -158.94 REMARK 500 VAL A 455 61.95 38.39 REMARK 500 GLN B 53 56.00 -107.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 29 OD1 REMARK 620 2 ASP A 87 OD1 155.2 REMARK 620 3 ASP A 87 OD2 151.7 52.9 REMARK 620 4 VAL A 126 O 83.1 85.9 112.1 REMARK 620 5 ASN A 128 OD1 78.5 78.9 124.1 87.4 REMARK 620 6 ILE A 130 O 85.7 98.9 84.0 162.1 76.8 REMARK 620 7 THR A 132 O 78.1 123.3 79.1 86.7 156.4 104.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 903 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 297 OD2 REMARK 620 2 LEU A 298 O 86.3 REMARK 620 3 GLY A 300 O 171.0 99.8 REMARK 620 4 MET A 303 O 91.4 87.5 82.2 REMARK 620 5 ASN A 306 O 81.2 165.5 91.8 85.5 REMARK 620 6 CYS A 326 O 97.9 90.9 88.8 170.4 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 454 OD1 REMARK 620 2 ASP A 488 OD2 174.2 REMARK 620 3 ASP A 553 OD2 83.9 101.4 REMARK 620 4 ASP A 553 OD1 87.1 94.3 51.2 REMARK 620 5 ALA A 555 O 93.1 81.8 127.2 76.1 REMARK 620 6 ASN A 578 OD1 91.0 85.7 149.3 159.0 83.2 REMARK 620 7 ASN A 579 OD1 96.5 87.2 76.2 126.6 155.7 74.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OXA RELATED DB: PDB REMARK 900 ORF2-FREE ASP STRUCTURE REMARK 900 RELATED ID: 2MK4 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF ORF2 (ENTITY 2) WAS NOT AVAILABLE AT THE UNIPROT REMARK 999 KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 3WQB A 1 600 UNP Q9L5A4 Q9L5A4_AERSO 25 624 DBREF 3WQB B -17 130 PDB 3WQB 3WQB -17 130 SEQADV 3WQB ALA A 336 UNP Q9L5A4 SER 360 ENGINEERED MUTATION SEQRES 1 A 600 ASN GLU GLY CYS ALA PRO LEU THR GLY LYS GLU SER GLY SEQRES 2 A 600 MET ASP ILE GLY ARG SER SER THR GLU ARG CYS LEU PRO SEQRES 3 A 600 GLY ALA ASN PRO LEU GLN ASP GLN GLN TRP TYR LEU LEU SEQRES 4 A 600 ASN SER GLY GLN ASP GLY PHE SER ALA ARG GLY GLY ILE SEQRES 5 A 600 ALA GLY ASN ASP LEU ASN LEU TRP TRP ALA HIS ARG THR SEQRES 6 A 600 GLY VAL LEU GLY GLN GLY VAL ASN VAL ALA VAL VAL ASP SEQRES 7 A 600 ASP GLY LEU ALA ILE ALA HIS PRO ASP LEU ALA ASP ASN SEQRES 8 A 600 VAL ARG PRO GLY SER LYS ASN VAL VAL THR GLY SER ASP SEQRES 9 A 600 ASP PRO THR PRO THR ASP PRO ASP THR ALA HIS GLY THR SEQRES 10 A 600 SER VAL SER GLY ILE ILE ALA ALA VAL ASP ASN ALA ILE SEQRES 11 A 600 GLY THR LYS GLY ILE ALA PRO ARG ALA GLN LEU GLN GLY SEQRES 12 A 600 PHE ASN LEU LEU ASP ASP ASN SER GLN GLN LEU GLN LYS SEQRES 13 A 600 ASP TRP LEU TYR ALA LEU GLY ASP SER ASN ALA SER ARG SEQRES 14 A 600 ASP ASN ARG VAL PHE ASN GLN SER TYR GLY MET SER VAL SEQRES 15 A 600 VAL ASP PRO ARG SER ALA ASN SER LEU ASP GLN SER GLN SEQRES 16 A 600 LEU ASP ARG LEU PHE GLU GLN GLN THR LEU LYS ALA GLN SEQRES 17 A 600 GLY ALA ALA TYR ILE LYS ALA ALA GLY ASN GLY PHE ASN SEQRES 18 A 600 LYS ILE ALA ALA GLY GLY TYR VAL LEU ASN ARG THR GLY SEQRES 19 A 600 ASN GLY PRO LYS LEU PRO PHE GLU ASN SER ASN LEU ASP SEQRES 20 A 600 PRO SER ASN SER ASN PHE TRP ASN LEU VAL VAL SER ALA SEQRES 21 A 600 LEU ASN ALA ASP GLY VAL ARG SER SER TYR SER SER VAL SEQRES 22 A 600 GLY SER ASN ILE PHE LEU SER ALA THR GLY GLY GLU TYR SEQRES 23 A 600 GLY THR ASP THR PRO ALA MET VAL THR THR ASP LEU PRO SEQRES 24 A 600 GLY CYS ASP MET GLY TYR ASN ARG THR ASP ASP PRO SER SEQRES 25 A 600 THR ASN ARG LEU HIS GLY ASN SER GLN LEU ASP ALA SER SEQRES 26 A 600 CYS ASP TYR ASN GLY VAL MET ASN GLY THR ALA SER ALA SEQRES 27 A 600 THR PRO SER THR SER GLY ALA MET ALA LEU LEU MET SER SEQRES 28 A 600 ALA TYR PRO ASP LEU SER VAL ARG ASP LEU ARG ASP LEU SEQRES 29 A 600 LEU ALA ARG SER ALA THR ARG VAL ASP ALA LYS HIS GLN SEQRES 30 A 600 PRO VAL MET VAL SER TYR THR SER SER THR GLY LYS VAL SEQRES 31 A 600 ARG ASP VAL LYS GLY LEU GLU GLY TRP GLU ARG ASN ALA SEQRES 32 A 600 ALA GLY MET TRP PHE SER PRO THR TYR GLY PHE GLY LEU SEQRES 33 A 600 ILE ASP VAL ASN LYS ALA LEU GLU LEU ALA ALA ASN HIS SEQRES 34 A 600 GLN PRO LEU PRO PRO LEU VAL GLN LEU PRO TRP GLN LYS SEQRES 35 A 600 ILE ASN VAL THR GLY SER ALA ALA ALA ILE ALA ASP VAL SEQRES 36 A 600 GLY ASN SER PRO THR SER SER THR THR ARG ILE ALA THR SEQRES 37 A 600 PRO LEU THR VAL GLU ALA VAL GLN VAL MET VAL SER LEU SEQRES 38 A 600 ASP HIS GLN ARG LEU PRO ASP LEU LEU ILE GLU LEU VAL SEQRES 39 A 600 SER PRO ALA GLY THR ARG SER ILE LEU LEU SER PRO PHE SEQRES 40 A 600 ASN SER LEU VAL GLY GLN SER LEU ASP GLN GLN GLN LEU SEQRES 41 A 600 GLY PHE VAL ARG THR LYS GLY LEU ARG ASP MET ARG MET SEQRES 42 A 600 LEU SER ASN LYS PHE TYR GLY GLU SER ALA GLN GLY THR SEQRES 43 A 600 TRP ARG LEU GLU VAL THR ASP VAL ALA ASN GLY THR ARG SEQRES 44 A 600 GLN VAL SER LEU LEU ASN ARG GLU THR ARG GLU ARG THR SEQRES 45 A 600 THR LEU THR GLU ARG ASN ASN ARG GLN PRO GLY LYS LEU SEQRES 46 A 600 ILE SER TRP SER LEU ARG VAL LEU GLY HIS ASP ALA ASN SEQRES 47 A 600 ARG SER SEQRES 1 B 148 GLN GLU HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL SEQRES 2 B 148 PRO ARG GLY SER GLY GLN GLU SER VAL THR MET ASP GLY SEQRES 3 B 148 LYS GLN TYR SER THR ILE GLU VAL ASN GLY GLN THR TYR SEQRES 4 B 148 LEU ILE PRO ASP ASN GLY SER LYS LYS ARG VAL ALA ARG SEQRES 5 B 148 SER LEU ASP SER LYS VAL PRO GLN GLN THR LEU ARG ARG SEQRES 6 B 148 GLY ASP VAL LEU MET GLN GLY ALA ALA SER PRO GLU LEU SEQRES 7 B 148 THR VAL SER GLY THR LEU LEU VAL GLU ALA ASP ASP ALA SEQRES 8 B 148 SER ALA LYS ALA LEU ALA THR ARG HIS GLY LEU ASN PHE SEQRES 9 B 148 LYS GLN SER SER GLY GLY ILE ALA LEU LEU GLU ALA LYS SEQRES 10 B 148 PRO GLY THR ASP LEU ASN ALA ILE ALA THR LYS LEU LYS SEQRES 11 B 148 SER GLU GLY VAL ASN VAL GLN ILE GLU LEU SER GLY ALA SEQRES 12 B 148 GLU GLN GLN PRO LYS HET CA A 901 1 HET CA A 902 1 HET CA A 903 1 HETNAM CA CALCIUM ION FORMUL 3 CA 3(CA 2+) FORMUL 6 HOH *392(H2 O) HELIX 1 1 LEU A 31 GLN A 35 5 5 HELIX 2 2 LEU A 59 THR A 65 1 7 HELIX 3 3 LEU A 88 VAL A 92 5 5 HELIX 4 4 ALA A 114 ALA A 125 1 12 HELIX 5 5 LEU A 154 LEU A 162 1 9 HELIX 6 6 SER A 190 LYS A 206 1 17 HELIX 7 7 ASP A 247 ASN A 252 5 6 HELIX 8 8 GLY A 334 TYR A 353 1 20 HELIX 9 9 SER A 357 ALA A 369 1 13 HELIX 10 10 ASP A 418 ALA A 427 1 10 HELIX 11 11 THR A 446 ALA A 449 5 4 HELIX 12 12 ARG A 485 PRO A 487 5 3 HELIX 13 13 VAL A 511 GLY A 521 1 11 HELIX 14 14 ASP B 71 ARG B 81 1 11 HELIX 15 15 ASP B 103 GLU B 114 1 12 SHEET 1 A 6 GLN A 140 PHE A 144 0 SHEET 2 A 6 ASN A 73 VAL A 77 1 N VAL A 74 O GLN A 140 SHEET 3 A 6 VAL A 173 GLN A 176 1 O ASN A 175 N ALA A 75 SHEET 4 A 6 ALA A 211 ALA A 215 1 O ILE A 213 N PHE A 174 SHEET 5 A 6 ASN A 255 LEU A 261 1 O LEU A 256 N LYS A 214 SHEET 6 A 6 ILE A 277 THR A 282 1 O PHE A 278 N VAL A 257 SHEET 1 B 2 TYR A 178 GLY A 179 0 SHEET 2 B 2 GLN B 128 PRO B 129 -1 O GLN B 128 N GLY A 179 SHEET 1 C 4 LYS A 222 ALA A 225 0 SHEET 2 C 4 TYR A 228 THR A 233 -1 O LEU A 230 N ILE A 223 SHEET 3 C 4 ARG A 559 ASN A 565 -1 O SER A 562 N ASN A 231 SHEET 4 C 4 ARG A 571 GLU A 576 -1 O LEU A 574 N VAL A 561 SHEET 1 D 2 MET A 293 THR A 296 0 SHEET 2 D 2 TYR A 328 MET A 332 -1 O MET A 332 N MET A 293 SHEET 1 E 2 VAL A 379 THR A 384 0 SHEET 2 E 2 VAL A 390 LEU A 396 -1 O GLY A 395 N VAL A 379 SHEET 1 F 2 GLU A 400 ARG A 401 0 SHEET 2 F 2 TRP A 407 PHE A 408 -1 O PHE A 408 N GLU A 400 SHEET 1 G 3 VAL A 436 GLN A 437 0 SHEET 2 G 3 GLY A 583 HIS A 595 -1 O GLY A 594 N VAL A 436 SHEET 3 G 3 ALA A 451 ILE A 452 -1 N ILE A 452 O GLY A 583 SHEET 1 H 4 GLN A 441 ASN A 444 0 SHEET 2 H 4 GLY A 583 HIS A 595 -1 O TRP A 588 N ILE A 443 SHEET 3 H 4 THR A 471 ASP A 482 -1 N GLU A 473 O LEU A 593 SHEET 4 H 4 GLY A 527 SER A 535 -1 O MET A 533 N VAL A 477 SHEET 1 I 4 THR A 460 ILE A 466 0 SHEET 2 I 4 GLY A 545 ASP A 553 -1 O VAL A 551 N THR A 460 SHEET 3 I 4 LEU A 489 VAL A 494 -1 N GLU A 492 O GLU A 550 SHEET 4 I 4 ARG A 500 LEU A 504 -1 O SER A 501 N LEU A 493 SHEET 1 J 2 THR B 13 VAL B 16 0 SHEET 2 J 2 GLN B 19 LEU B 22 -1 O TYR B 21 N ILE B 14 SHEET 1 K 4 VAL B 50 LEU B 51 0 SHEET 2 K 4 LEU B 60 GLU B 69 -1 O LEU B 60 N LEU B 51 SHEET 3 K 4 ILE B 93 ALA B 98 -1 O LEU B 96 N LEU B 66 SHEET 4 K 4 LEU B 84 SER B 90 -1 N ASN B 85 O GLU B 97 SHEET 1 L 3 VAL B 50 LEU B 51 0 SHEET 2 L 3 LEU B 60 GLU B 69 -1 O LEU B 60 N LEU B 51 SHEET 3 L 3 VAL B 118 SER B 123 -1 O GLN B 119 N LEU B 67 SSBOND 1 CYS A 4 CYS A 24 1555 1555 2.08 SSBOND 2 CYS A 301 CYS A 326 1555 1555 2.04 LINK OD1 ASN A 29 CA CA A 901 1555 1555 2.39 LINK OD1 ASP A 87 CA CA A 901 1555 1555 2.42 LINK OD2 ASP A 87 CA CA A 901 1555 1555 2.52 LINK O VAL A 126 CA CA A 901 1555 1555 2.30 LINK OD1 ASN A 128 CA CA A 901 1555 1555 2.40 LINK O ILE A 130 CA CA A 901 1555 1555 2.35 LINK O THR A 132 CA CA A 901 1555 1555 2.35 LINK OD2 ASP A 297 CA CA A 903 1555 1555 2.43 LINK O LEU A 298 CA CA A 903 1555 1555 2.42 LINK O GLY A 300 CA CA A 903 1555 1555 2.40 LINK O MET A 303 CA CA A 903 1555 1555 2.26 LINK O ASN A 306 CA CA A 903 1555 1555 2.49 LINK O CYS A 326 CA CA A 903 1555 1555 2.37 LINK OD1 ASP A 454 CA CA A 902 1555 1555 2.28 LINK OD2 ASP A 488 CA CA A 902 1555 1555 2.34 LINK OD2 ASP A 553 CA CA A 902 1555 1555 2.49 LINK OD1 ASP A 553 CA CA A 902 1555 1555 2.55 LINK O ALA A 555 CA CA A 902 1555 1555 2.33 LINK OD1 ASN A 578 CA CA A 902 1555 1555 2.40 LINK OD1 ASN A 579 CA CA A 902 1555 1555 2.37 SITE 1 AC1 6 ASN A 29 ASP A 87 VAL A 126 ASN A 128 SITE 2 AC1 6 ILE A 130 THR A 132 SITE 1 AC2 6 ASP A 454 ASP A 488 ASP A 553 ALA A 555 SITE 2 AC2 6 ASN A 578 ASN A 579 SITE 1 AC3 6 ASP A 297 LEU A 298 GLY A 300 MET A 303 SITE 2 AC3 6 ASN A 306 CYS A 326 CRYST1 152.062 152.062 51.625 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006576 0.003797 0.000000 0.00000 SCALE2 0.000000 0.007594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019370 0.00000