HEADER OXIDOREDUCTASE 25-FEB-14 3WRH TITLE CRYSTAL STRUCTURE OF P450CAM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMPHOR 5-MONOOXYGENASE; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: CYTOCHROME P450-CAM, CYTOCHROME P450CAM; COMPND 5 EC: 1.14.15.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: CAMC, CYP101; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC18 KEYWDS OXIDOREDUCTASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.KISHIMOTO,K.TAKAGI,A.AMANO,K.SAKURAI,T.MIZUSHIMA,H.SHIMADA REVDAT 2 08-NOV-23 3WRH 1 REMARK SEQADV LINK REVDAT 1 18-MAR-15 3WRH 0 JRNL AUTH A.KISHIMOTO,K.TAKAGI,A.AMANO,K.SAKURAI,Y.KATAYAMA,R.AMINAKA, JRNL AUTH 2 M.ITO,T.MIZUSHIMA,H.SHIMADA JRNL TITL STRUCTURE OF P450CAM INTERMEDITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 95740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5028 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 337 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 569 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6756 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9238 ; 2.402 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 832 ; 5.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 321 ;33.701 ;23.894 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1112 ;13.749 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;13.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 997 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5249 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A E REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 20 A 420 4 REMARK 3 1 E 20 E 420 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3103 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3103 ; 2.970 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WRH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000096700. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100975 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3L63 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM TRIS-HCL, 200MM KCL,20-30% PEG REMARK 280 4000, 0.00025MM CAMPHOR, PH 7.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 279K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.33400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 THR A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 SER A 7 REMARK 465 ASN A 8 REMARK 465 ALA A 9 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 465 HIS A 417 REMARK 465 HIS A 418 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 MET E 0 REMARK 465 THR E 1 REMARK 465 THR E 2 REMARK 465 GLU E 3 REMARK 465 THR E 4 REMARK 465 ILE E 5 REMARK 465 GLN E 6 REMARK 465 SER E 7 REMARK 465 ASN E 8 REMARK 465 ALA E 9 REMARK 465 HIS E 415 REMARK 465 HIS E 416 REMARK 465 HIS E 417 REMARK 465 HIS E 418 REMARK 465 HIS E 419 REMARK 465 HIS E 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 334 SG REMARK 470 CYS E 334 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 42 CE2 TRP A 42 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 79 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG E 72 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 PRO E 122 C - N - CA ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 62.99 -157.22 REMARK 500 ASP A 97 21.72 -143.50 REMARK 500 TYR A 154 -48.77 -148.30 REMARK 500 ASP A 251 33.13 -140.10 REMARK 500 THR A 252 -76.52 -121.77 REMARK 500 LEU A 294 -3.89 -144.81 REMARK 500 ASP A 297 -159.42 -119.70 REMARK 500 ASN E 30 73.63 -161.23 REMARK 500 ASP E 97 21.81 -140.10 REMARK 500 TYR E 154 -53.95 -142.64 REMARK 500 ASN E 229 49.38 39.62 REMARK 500 ASP E 251 33.34 -143.49 REMARK 500 THR E 252 -78.25 -124.51 REMARK 500 LEU E 294 -3.34 -145.66 REMARK 500 ASP E 297 -154.37 -119.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 O REMARK 620 2 GLY A 93 O 86.4 REMARK 620 3 GLU A 94 O 159.9 77.4 REMARK 620 4 TYR A 96 O 97.5 87.4 93.6 REMARK 620 5 HOH A 695 O 85.5 92.8 83.5 177.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 103.1 REMARK 620 3 HEM A 501 NB 92.2 89.6 REMARK 620 4 HEM A 501 NC 96.0 160.7 87.0 REMARK 620 5 HEM A 501 ND 103.7 88.7 164.1 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K E 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 84 O REMARK 620 2 GLU E 84 OE1 62.2 REMARK 620 3 GLY E 93 O 84.6 105.7 REMARK 620 4 GLU E 94 O 156.9 108.8 77.4 REMARK 620 5 TYR E 96 O 98.6 156.2 84.9 94.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 357 SG REMARK 620 2 HEM E 501 NA 104.0 REMARK 620 3 HEM E 501 NB 93.5 88.5 REMARK 620 4 HEM E 501 NC 96.9 159.0 88.1 REMARK 620 5 HEM E 501 ND 104.0 87.1 162.5 89.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAM A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAM E 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WRI RELATED DB: PDB REMARK 900 RELATED ID: 3WRJ RELATED DB: PDB REMARK 900 RELATED ID: 3WRK RELATED DB: PDB REMARK 900 RELATED ID: 3WRL RELATED DB: PDB REMARK 900 RELATED ID: 3WRM RELATED DB: PDB DBREF 3WRH A 0 414 UNP P00183 CPXA_PSEPU 1 415 DBREF 3WRH E 0 414 UNP P00183 CPXA_PSEPU 1 415 SEQADV 3WRH HIS A 415 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS A 416 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS A 417 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS A 418 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS A 419 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS A 420 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 415 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 416 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 417 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 418 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 419 UNP P00183 EXPRESSION TAG SEQADV 3WRH HIS E 420 UNP P00183 EXPRESSION TAG SEQRES 1 A 421 MET THR THR GLU THR ILE GLN SER ASN ALA ASN LEU ALA SEQRES 2 A 421 PRO LEU PRO PRO HIS VAL PRO GLU HIS LEU VAL PHE ASP SEQRES 3 A 421 PHE ASP MET TYR ASN PRO SER ASN LEU SER ALA GLY VAL SEQRES 4 A 421 GLN GLU ALA TRP ALA VAL LEU GLN GLU SER ASN VAL PRO SEQRES 5 A 421 ASP LEU VAL TRP THR ARG CYS ASN GLY GLY HIS TRP ILE SEQRES 6 A 421 ALA THR ARG GLY GLN LEU ILE ARG GLU ALA TYR GLU ASP SEQRES 7 A 421 TYR ARG HIS PHE SER SER GLU CYS PRO PHE ILE PRO ARG SEQRES 8 A 421 GLU ALA GLY GLU ALA TYR ASP PHE ILE PRO THR SER MET SEQRES 9 A 421 ASP PRO PRO GLU GLN ARG GLN PHE ARG ALA LEU ALA ASN SEQRES 10 A 421 GLN VAL VAL GLY MET PRO VAL VAL ASP LYS LEU GLU ASN SEQRES 11 A 421 ARG ILE GLN GLU LEU ALA CYS SER LEU ILE GLU SER LEU SEQRES 12 A 421 ARG PRO GLN GLY GLN CYS ASN PHE THR GLU ASP TYR ALA SEQRES 13 A 421 GLU PRO PHE PRO ILE ARG ILE PHE MET LEU LEU ALA GLY SEQRES 14 A 421 LEU PRO GLU GLU ASP ILE PRO HIS LEU LYS TYR LEU THR SEQRES 15 A 421 ASP GLN MET THR ARG PRO ASP GLY SER MET THR PHE ALA SEQRES 16 A 421 GLU ALA LYS GLU ALA LEU TYR ASP TYR LEU ILE PRO ILE SEQRES 17 A 421 ILE GLU GLN ARG ARG GLN LYS PRO GLY THR ASP ALA ILE SEQRES 18 A 421 SER ILE VAL ALA ASN GLY GLN VAL ASN GLY ARG PRO ILE SEQRES 19 A 421 THR SER ASP GLU ALA LYS ARG MET CYS GLY LEU LEU LEU SEQRES 20 A 421 VAL GLY GLY LEU ASP THR VAL VAL ASN PHE LEU SER PHE SEQRES 21 A 421 SER MET GLU PHE LEU ALA LYS SER PRO GLU HIS ARG GLN SEQRES 22 A 421 GLU LEU ILE GLU ARG PRO GLU ARG ILE PRO ALA ALA CYS SEQRES 23 A 421 GLU GLU LEU LEU ARG ARG PHE SER LEU VAL ALA ASP GLY SEQRES 24 A 421 ARG ILE LEU THR SER ASP TYR GLU PHE HIS GLY VAL GLN SEQRES 25 A 421 LEU LYS LYS GLY ASP GLN ILE LEU LEU PRO GLN MET LEU SEQRES 26 A 421 SER GLY LEU ASP GLU ARG GLU ASN ALA CYS PRO MET HIS SEQRES 27 A 421 VAL ASP PHE SER ARG GLN LYS VAL SER HIS THR THR PHE SEQRES 28 A 421 GLY HIS GLY SER HIS LEU CYS LEU GLY GLN HIS LEU ALA SEQRES 29 A 421 ARG ARG GLU ILE ILE VAL THR LEU LYS GLU TRP LEU THR SEQRES 30 A 421 ARG ILE PRO ASP PHE SER ILE ALA PRO GLY ALA GLN ILE SEQRES 31 A 421 GLN HIS LYS SER GLY ILE VAL SER GLY VAL GLN ALA LEU SEQRES 32 A 421 PRO LEU VAL TRP ASP PRO ALA THR THR LYS ALA VAL HIS SEQRES 33 A 421 HIS HIS HIS HIS HIS SEQRES 1 E 421 MET THR THR GLU THR ILE GLN SER ASN ALA ASN LEU ALA SEQRES 2 E 421 PRO LEU PRO PRO HIS VAL PRO GLU HIS LEU VAL PHE ASP SEQRES 3 E 421 PHE ASP MET TYR ASN PRO SER ASN LEU SER ALA GLY VAL SEQRES 4 E 421 GLN GLU ALA TRP ALA VAL LEU GLN GLU SER ASN VAL PRO SEQRES 5 E 421 ASP LEU VAL TRP THR ARG CYS ASN GLY GLY HIS TRP ILE SEQRES 6 E 421 ALA THR ARG GLY GLN LEU ILE ARG GLU ALA TYR GLU ASP SEQRES 7 E 421 TYR ARG HIS PHE SER SER GLU CYS PRO PHE ILE PRO ARG SEQRES 8 E 421 GLU ALA GLY GLU ALA TYR ASP PHE ILE PRO THR SER MET SEQRES 9 E 421 ASP PRO PRO GLU GLN ARG GLN PHE ARG ALA LEU ALA ASN SEQRES 10 E 421 GLN VAL VAL GLY MET PRO VAL VAL ASP LYS LEU GLU ASN SEQRES 11 E 421 ARG ILE GLN GLU LEU ALA CYS SER LEU ILE GLU SER LEU SEQRES 12 E 421 ARG PRO GLN GLY GLN CYS ASN PHE THR GLU ASP TYR ALA SEQRES 13 E 421 GLU PRO PHE PRO ILE ARG ILE PHE MET LEU LEU ALA GLY SEQRES 14 E 421 LEU PRO GLU GLU ASP ILE PRO HIS LEU LYS TYR LEU THR SEQRES 15 E 421 ASP GLN MET THR ARG PRO ASP GLY SER MET THR PHE ALA SEQRES 16 E 421 GLU ALA LYS GLU ALA LEU TYR ASP TYR LEU ILE PRO ILE SEQRES 17 E 421 ILE GLU GLN ARG ARG GLN LYS PRO GLY THR ASP ALA ILE SEQRES 18 E 421 SER ILE VAL ALA ASN GLY GLN VAL ASN GLY ARG PRO ILE SEQRES 19 E 421 THR SER ASP GLU ALA LYS ARG MET CYS GLY LEU LEU LEU SEQRES 20 E 421 VAL GLY GLY LEU ASP THR VAL VAL ASN PHE LEU SER PHE SEQRES 21 E 421 SER MET GLU PHE LEU ALA LYS SER PRO GLU HIS ARG GLN SEQRES 22 E 421 GLU LEU ILE GLU ARG PRO GLU ARG ILE PRO ALA ALA CYS SEQRES 23 E 421 GLU GLU LEU LEU ARG ARG PHE SER LEU VAL ALA ASP GLY SEQRES 24 E 421 ARG ILE LEU THR SER ASP TYR GLU PHE HIS GLY VAL GLN SEQRES 25 E 421 LEU LYS LYS GLY ASP GLN ILE LEU LEU PRO GLN MET LEU SEQRES 26 E 421 SER GLY LEU ASP GLU ARG GLU ASN ALA CYS PRO MET HIS SEQRES 27 E 421 VAL ASP PHE SER ARG GLN LYS VAL SER HIS THR THR PHE SEQRES 28 E 421 GLY HIS GLY SER HIS LEU CYS LEU GLY GLN HIS LEU ALA SEQRES 29 E 421 ARG ARG GLU ILE ILE VAL THR LEU LYS GLU TRP LEU THR SEQRES 30 E 421 ARG ILE PRO ASP PHE SER ILE ALA PRO GLY ALA GLN ILE SEQRES 31 E 421 GLN HIS LYS SER GLY ILE VAL SER GLY VAL GLN ALA LEU SEQRES 32 E 421 PRO LEU VAL TRP ASP PRO ALA THR THR LYS ALA VAL HIS SEQRES 33 E 421 HIS HIS HIS HIS HIS HET HEM A 501 43 HET K A 502 1 HET CAM A 503 11 HET HEM E 501 43 HET K E 502 1 HET CAM E 503 11 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM K POTASSIUM ION HETNAM CAM CAMPHOR HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 K 2(K 1+) FORMUL 5 CAM 2(C10 H16 O) FORMUL 9 HOH *569(H2 O) HELIX 1 1 PRO A 19 VAL A 23 5 5 HELIX 2 2 ASN A 33 ALA A 36 5 4 HELIX 3 3 GLY A 37 VAL A 44 1 8 HELIX 4 4 LEU A 45 GLU A 47 5 3 HELIX 5 5 ARG A 57 GLY A 61 5 5 HELIX 6 6 ARG A 67 ASP A 77 1 11 HELIX 7 7 PRO A 89 TYR A 96 1 8 HELIX 8 8 GLU A 107 GLY A 120 1 14 HELIX 9 9 GLY A 120 ARG A 143 1 24 HELIX 10 10 PHE A 150 TYR A 154 1 5 HELIX 11 11 GLU A 156 GLY A 168 1 13 HELIX 12 12 PRO A 170 GLU A 172 5 3 HELIX 13 13 ASP A 173 ARG A 186 1 14 HELIX 14 14 THR A 192 LYS A 214 1 23 HELIX 15 15 ASP A 218 ASN A 225 1 8 HELIX 16 16 THR A 234 ASP A 251 1 18 HELIX 17 17 THR A 252 SER A 267 1 16 HELIX 18 18 SER A 267 ARG A 277 1 11 HELIX 19 19 ARG A 280 PHE A 292 1 13 HELIX 20 20 MET A 323 ASP A 328 1 6 HELIX 21 21 HIS A 352 LEU A 356 5 5 HELIX 22 22 GLY A 359 ILE A 378 1 20 HELIX 23 23 ASP A 407 THR A 411 5 5 HELIX 24 24 PRO E 19 VAL E 23 5 5 HELIX 25 25 ASN E 33 ALA E 36 5 4 HELIX 26 26 GLY E 37 VAL E 44 1 8 HELIX 27 27 LEU E 45 GLU E 47 5 3 HELIX 28 28 ARG E 57 GLY E 61 5 5 HELIX 29 29 ARG E 67 ASP E 77 1 11 HELIX 30 30 PRO E 89 TYR E 96 1 8 HELIX 31 31 GLN E 108 GLY E 120 1 13 HELIX 32 32 GLY E 120 ARG E 143 1 24 HELIX 33 33 PHE E 150 TYR E 154 1 5 HELIX 34 34 GLU E 156 ALA E 167 1 12 HELIX 35 35 PRO E 170 GLU E 172 5 3 HELIX 36 36 ASP E 173 ARG E 186 1 14 HELIX 37 37 THR E 192 LYS E 214 1 23 HELIX 38 38 ASP E 218 ASN E 225 1 8 HELIX 39 39 THR E 234 THR E 252 1 19 HELIX 40 40 THR E 252 LYS E 266 1 15 HELIX 41 41 SER E 267 ARG E 277 1 11 HELIX 42 42 ARG E 280 PHE E 292 1 13 HELIX 43 43 LEU E 324 ASP E 328 5 5 HELIX 44 44 HIS E 352 LEU E 356 5 5 HELIX 45 45 GLY E 359 ILE E 378 1 20 HELIX 46 46 ASP E 407 THR E 411 5 5 SHEET 1 A 5 LEU A 53 THR A 56 0 SHEET 2 A 5 HIS A 62 ALA A 65 -1 O HIS A 62 N THR A 56 SHEET 3 A 5 GLN A 317 LEU A 320 1 O LEU A 319 N TRP A 63 SHEET 4 A 5 ASP A 297 LEU A 301 -1 N ARG A 299 O ILE A 318 SHEET 5 A 5 PHE A 81 SER A 82 -1 N SER A 82 O ILE A 300 SHEET 1 B 3 GLN A 147 ASN A 149 0 SHEET 2 B 3 PRO A 403 VAL A 405 -1 O LEU A 404 N CYS A 148 SHEET 3 B 3 SER A 382 ILE A 383 -1 N SER A 382 O VAL A 405 SHEET 1 C 2 GLN A 227 VAL A 228 0 SHEET 2 C 2 ARG A 231 PRO A 232 -1 O ARG A 231 N VAL A 228 SHEET 1 D 2 TYR A 305 PHE A 307 0 SHEET 2 D 2 VAL A 310 LEU A 312 -1 O VAL A 310 N PHE A 307 SHEET 1 E 2 HIS A 391 LYS A 392 0 SHEET 2 E 2 GLY A 398 VAL A 399 -1 O GLY A 398 N LYS A 392 SHEET 1 F 5 LEU E 53 THR E 56 0 SHEET 2 F 5 HIS E 62 ALA E 65 -1 O ILE E 64 N VAL E 54 SHEET 3 F 5 GLN E 317 LEU E 320 1 O LEU E 319 N TRP E 63 SHEET 4 F 5 ASP E 297 LEU E 301 -1 N ARG E 299 O ILE E 318 SHEET 5 F 5 PHE E 81 SER E 82 -1 N SER E 82 O ILE E 300 SHEET 1 G 3 GLN E 147 ASN E 149 0 SHEET 2 G 3 PRO E 403 VAL E 405 -1 O LEU E 404 N CYS E 148 SHEET 3 G 3 SER E 382 ILE E 383 -1 N SER E 382 O VAL E 405 SHEET 1 H 2 GLN E 227 VAL E 228 0 SHEET 2 H 2 ARG E 231 PRO E 232 -1 O ARG E 231 N VAL E 228 SHEET 1 I 2 TYR E 305 PHE E 307 0 SHEET 2 I 2 VAL E 310 LEU E 312 -1 O LEU E 312 N TYR E 305 SHEET 1 J 2 HIS E 391 LYS E 392 0 SHEET 2 J 2 GLY E 398 VAL E 399 -1 O GLY E 398 N LYS E 392 LINK O GLU A 84 K K A 502 1555 1555 2.55 LINK O GLY A 93 K K A 502 1555 1555 2.77 LINK O GLU A 94 K K A 502 1555 1555 2.84 LINK O TYR A 96 K K A 502 1555 1555 2.69 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.34 LINK K K A 502 O HOH A 695 1555 1555 2.83 LINK O GLU E 84 K K E 502 1555 1555 2.53 LINK OE1 GLU E 84 K K E 502 1555 1555 3.06 LINK O GLY E 93 K K E 502 1555 1555 2.82 LINK O GLU E 94 K K E 502 1555 1555 2.77 LINK O TYR E 96 K K E 502 1555 1555 2.67 LINK SG CYS E 357 FE HEM E 501 1555 1555 2.33 CISPEP 1 ILE A 88 PRO A 89 0 2.80 CISPEP 2 ILE A 99 PRO A 100 0 7.42 CISPEP 3 PRO A 105 PRO A 106 0 2.57 CISPEP 4 ILE E 88 PRO E 89 0 1.01 CISPEP 5 ILE E 99 PRO E 100 0 8.58 CISPEP 6 PRO E 105 PRO E 106 0 6.82 SITE 1 AC1 18 PRO A 100 THR A 101 GLN A 108 ARG A 112 SITE 2 AC1 18 GLY A 248 THR A 252 ASP A 297 ARG A 299 SITE 3 AC1 18 GLN A 322 THR A 349 PHE A 350 GLY A 351 SITE 4 AC1 18 HIS A 355 CYS A 357 GLY A 359 CAM A 503 SITE 5 AC1 18 HOH A 610 HOH A 804 SITE 1 AC2 5 GLU A 84 GLY A 93 GLU A 94 TYR A 96 SITE 2 AC2 5 HOH A 695 SITE 1 AC3 5 PHE A 87 TYR A 96 LEU A 244 VAL A 247 SITE 2 AC3 5 HEM A 501 SITE 1 AC4 17 PRO E 100 THR E 101 GLN E 108 ARG E 112 SITE 2 AC4 17 GLY E 248 THR E 252 ASP E 297 ARG E 299 SITE 3 AC4 17 GLN E 322 THR E 349 PHE E 350 GLY E 351 SITE 4 AC4 17 HIS E 355 CYS E 357 GLY E 359 CAM E 503 SITE 5 AC4 17 HOH E 613 SITE 1 AC5 4 GLU E 84 GLY E 93 GLU E 94 TYR E 96 SITE 1 AC6 5 PHE E 87 TYR E 96 LEU E 244 VAL E 295 SITE 2 AC6 5 HEM E 501 CRYST1 66.994 62.668 96.038 90.00 90.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014927 0.000000 0.000206 0.00000 SCALE2 0.000000 0.015957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010414 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.974741 0.030109 -0.221298 43.54911 1 MTRIX2 2 0.028153 0.999532 0.011990 27.98787 1 MTRIX3 2 0.221555 0.005457 -0.975133 39.39337 1