data_3WSR # _entry.id 3WSR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3WSR pdb_00003wsr 10.2210/pdb3wsr/pdb RCSB RCSB096745 ? ? WWPDB D_1000096745 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2C6U _pdbx_database_related.details 'Ligand-free form' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WSR _pdbx_database_status.recvd_initial_deposition_date 2014-03-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagae, M.' 1 'Morita-Matsumoto, K.' 2 'Kato, M.' 3 'Kato-Kaneko, M.' 4 'Kato, Y.' 5 'Yamaguchi, Y.' 6 # _citation.id primary _citation.title 'A Platform of C-type Lectin-like Receptor CLEC-2 for Binding O-Glycosylated Podoplanin and Nonglycosylated Rhodocytin' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 1711 _citation.page_last 1721 _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25458834 _citation.pdbx_database_id_DOI 10.1016/j.str.2014.09.009 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagae, M.' 1 ? primary 'Morita-Matsumoto, K.' 2 ? primary 'Kato, M.' 3 ? primary 'Kato-Kaneko, M.' 4 ? primary 'Kato, Y.' 5 ? primary 'Yamaguchi, Y.' 6 ? # _cell.entry_id 3WSR _cell.length_a 54.369 _cell.length_b 51.194 _cell.length_c 54.099 _cell.angle_alpha 90.00 _cell.angle_beta 112.77 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WSR _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'C-type lectin domain family 1 member B' 15157.050 2 ? C99S 'CLEC-2, UNP residues 96-221' ? 2 polymer syn 'Peptide from Podoplanin' 1703.846 2 ? ? ? ? 3 branched man 'beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose' 674.604 2 ? ? ? ? 4 water nat water 18.015 36 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'C-type lectin-like receptor 2, CLEC-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSGHKSSPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWE DGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG ; ;GSGHKSSPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWE DGSVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG ; A,B ? 2 'polypeptide(L)' no no EGGVAMPGAEDDVVTPGC EGGVAMPGAEDDVVTPGC C,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 HIS n 1 5 LYS n 1 6 SER n 1 7 SER n 1 8 PRO n 1 9 CYS n 1 10 ASP n 1 11 THR n 1 12 ASN n 1 13 TRP n 1 14 ARG n 1 15 TYR n 1 16 TYR n 1 17 GLY n 1 18 ASP n 1 19 SER n 1 20 CYS n 1 21 TYR n 1 22 GLY n 1 23 PHE n 1 24 PHE n 1 25 ARG n 1 26 HIS n 1 27 ASN n 1 28 LEU n 1 29 THR n 1 30 TRP n 1 31 GLU n 1 32 GLU n 1 33 SER n 1 34 LYS n 1 35 GLN n 1 36 TYR n 1 37 CYS n 1 38 THR n 1 39 ASP n 1 40 MET n 1 41 ASN n 1 42 ALA n 1 43 THR n 1 44 LEU n 1 45 LEU n 1 46 LYS n 1 47 ILE n 1 48 ASP n 1 49 ASN n 1 50 ARG n 1 51 ASN n 1 52 ILE n 1 53 VAL n 1 54 GLU n 1 55 TYR n 1 56 ILE n 1 57 LYS n 1 58 ALA n 1 59 ARG n 1 60 THR n 1 61 HIS n 1 62 LEU n 1 63 ILE n 1 64 ARG n 1 65 TRP n 1 66 VAL n 1 67 GLY n 1 68 LEU n 1 69 SER n 1 70 ARG n 1 71 GLN n 1 72 LYS n 1 73 SER n 1 74 ASN n 1 75 GLU n 1 76 VAL n 1 77 TRP n 1 78 LYS n 1 79 TRP n 1 80 GLU n 1 81 ASP n 1 82 GLY n 1 83 SER n 1 84 VAL n 1 85 ILE n 1 86 SER n 1 87 GLU n 1 88 ASN n 1 89 MET n 1 90 PHE n 1 91 GLU n 1 92 PHE n 1 93 LEU n 1 94 GLU n 1 95 ASP n 1 96 GLY n 1 97 LYS n 1 98 GLY n 1 99 ASN n 1 100 MET n 1 101 ASN n 1 102 CYS n 1 103 ALA n 1 104 TYR n 1 105 PHE n 1 106 HIS n 1 107 ASN n 1 108 GLY n 1 109 LYS n 1 110 MET n 1 111 HIS n 1 112 PRO n 1 113 THR n 1 114 PHE n 1 115 CYS n 1 116 GLU n 1 117 ASN n 1 118 LYS n 1 119 HIS n 1 120 TYR n 1 121 LEU n 1 122 MET n 1 123 CYS n 1 124 GLU n 1 125 ARG n 1 126 LYS n 1 127 ALA n 1 128 GLY n 2 1 GLU n 2 2 GLY n 2 3 GLY n 2 4 VAL n 2 5 ALA n 2 6 MET n 2 7 PRO n 2 8 GLY n 2 9 ALA n 2 10 GLU n 2 11 ASP n 2 12 ASP n 2 13 VAL n 2 14 VAL n 2 15 THR n 2 16 PRO n 2 17 GLY n 2 18 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CLEC1B, CLEC2, UNQ721/PRO1384' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pCold _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP CLC1B_HUMAN Q9P126 1 ;GHKCSPCDTNWRYYGDSCYGFFRHNLTWEESKQYCTDMNATLLKIDNRNIVEYIKARTHLIRWVGLSRQKSNEVWKWEDG SVISENMFEFLEDGKGNMNCAYFHNGKMHPTFCENKHYLMCERKAG ; 96 ? 2 UNP PDPN_HUMAN Q86YL7 2 EGGVAMPGAEDDVVTPG 38 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WSR A 3 ? 128 ? Q9P126 96 ? 221 ? 96 221 2 1 3WSR B 3 ? 128 ? Q9P126 96 ? 221 ? 96 221 3 2 3WSR C 1 ? 17 ? Q86YL7 38 ? 54 ? 38 54 4 2 3WSR D 1 ? 17 ? Q86YL7 38 ? 54 ? 38 54 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WSR GLY A 1 ? UNP Q9P126 ? ? 'expression tag' 94 1 1 3WSR SER A 2 ? UNP Q9P126 ? ? 'expression tag' 95 2 1 3WSR SER A 6 ? UNP Q9P126 CYS 99 'engineered mutation' 99 3 2 3WSR GLY B 1 ? UNP Q9P126 ? ? 'expression tag' 94 4 2 3WSR SER B 2 ? UNP Q9P126 ? ? 'expression tag' 95 5 2 3WSR SER B 6 ? UNP Q9P126 CYS 99 'engineered mutation' 99 6 3 3WSR CYS C 18 ? UNP Q86YL7 ? ? 'expression tag' 55 7 4 3WSR CYS D 18 ? UNP Q86YL7 ? ? 'expression tag' 55 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A2G 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-galactopyranose ;N-acetyl-alpha-D-galactosamine; 2-acetamido-2-deoxy-alpha-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE ; 'C8 H15 N O6' 221.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid' 'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3WSR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.06 _exptl_crystal.density_percent_sol 40.25 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1 M Tris-HCl (pH 8.5), 25% (w/v) polyethylene glycol (PEG) 3350, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date 2014-02-04 _diffrn_detector.details Monochrometer # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1 # _reflns.entry_id 3WSR _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 100 _reflns.d_resolution_high 1.9 _reflns.number_obs 21375 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.072 _reflns.pdbx_netI_over_sigmaI 24.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.495 _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1048 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3WSR _refine.ls_number_reflns_obs 20339 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.13 _refine.ls_d_res_high 1.91 _refine.ls_percent_reflns_obs 99.35 _refine.ls_R_factor_obs 0.21936 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21737 _refine.ls_R_factor_R_free 0.25877 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 1022 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.908 _refine.B_iso_mean 28.010 _refine.aniso_B[1][1] -0.93 _refine.aniso_B[2][2] -0.14 _refine.aniso_B[3][3] 0.73 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.09 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB code 2C6U' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.191 _refine.pdbx_overall_ESU_R_Free 0.169 _refine.overall_SU_ML 0.127 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 4.343 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2166 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 2292 _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 50.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.009 0.019 ? 2327 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 2043 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.368 1.951 ? 3141 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.825 3.000 ? 4701 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 7.048 5.000 ? 257 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.989 24.032 ? 124 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.712 15.000 ? 380 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 13.864 15.000 ? 14 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.088 0.200 ? 322 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.020 ? 2577 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 583 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1.905 2.672 ? 1040 ? 'X-RAY DIFFRACTION' r_mcbond_other 1.905 2.672 ? 1039 ? 'X-RAY DIFFRACTION' r_mcangle_it 3.099 3.989 ? 1293 ? 'X-RAY DIFFRACTION' r_mcangle_other 3.098 3.989 ? 1294 ? 'X-RAY DIFFRACTION' r_scbond_it 2.054 2.872 ? 1287 ? 'X-RAY DIFFRACTION' r_scbond_other 2.054 2.872 ? 1287 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 3.386 4.202 ? 1849 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 5.092 21.201 ? 2598 ? 'X-RAY DIFFRACTION' r_long_range_B_other 5.095 21.206 ? 2593 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.909 _refine_ls_shell.d_res_low 1.958 _refine_ls_shell.number_reflns_R_work 1405 _refine_ls_shell.R_factor_R_work 0.257 _refine_ls_shell.percent_reflns_obs 91.71 _refine_ls_shell.R_factor_R_free 0.353 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3WSR _struct.title 'Crystal structure of CLEC-2 in complex with O-glycosylated podoplanin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WSR _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'C-type lectin fold, Cell surface receptor, Podoplanin, O-glycosylated, Extracellular region, SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 29 ? MET A 40 ? THR A 122 MET A 133 1 ? 12 HELX_P HELX_P2 2 ASN A 49 ? THR A 60 ? ASN A 142 THR A 153 1 ? 12 HELX_P HELX_P3 3 SER A 86 ? LEU A 93 ? SER A 179 LEU A 186 5 ? 8 HELX_P HELX_P4 4 THR B 29 ? MET B 40 ? THR B 122 MET B 133 1 ? 12 HELX_P HELX_P5 5 ASN B 49 ? THR B 60 ? ASN B 142 THR B 153 1 ? 12 HELX_P HELX_P6 6 MET B 89 ? LEU B 93 ? MET B 182 LEU B 186 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 20 SG ? ? A CYS 102 A CYS 113 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf2 disulf ? ? A CYS 37 SG ? ? ? 1_555 A CYS 123 SG ? ? A CYS 130 A CYS 216 1_555 ? ? ? ? ? ? ? 2.061 ? ? disulf3 disulf ? ? A CYS 102 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 195 A CYS 208 1_555 ? ? ? ? ? ? ? 2.038 ? ? disulf4 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 20 SG ? ? B CYS 102 B CYS 113 1_555 ? ? ? ? ? ? ? 2.048 ? ? disulf5 disulf ? ? B CYS 37 SG ? ? ? 1_555 B CYS 123 SG ? ? B CYS 130 B CYS 216 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf6 disulf ? ? B CYS 102 SG ? ? ? 1_555 B CYS 115 SG ? ? B CYS 195 B CYS 208 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf7 disulf ? ? C CYS 18 SG ? ? ? 1_555 D CYS 18 SG ? ? C CYS 55 D CYS 55 1_555 ? ? ? ? ? ? ? 2.002 ? ? covale1 covale one ? C THR 15 OG1 ? ? ? 1_555 E A2G . C1 ? ? C THR 52 E A2G 1 1_555 ? ? ? ? ? ? ? 1.436 ? O-Glycosylation covale2 covale one ? D THR 15 OG1 ? ? ? 1_555 F A2G . C1 ? ? D THR 52 F A2G 1 1_555 ? ? ? ? ? ? ? 1.457 ? O-Glycosylation covale3 covale both ? E A2G . O3 ? ? ? 1_555 E GAL . C1 ? ? E A2G 1 E GAL 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale4 covale both ? E A2G . O6 ? ? ? 1_555 E SIA . C2 ? ? E A2G 1 E SIA 3 1_555 ? ? ? ? ? ? ? 1.426 ? ? covale5 covale both ? F A2G . O3 ? ? ? 1_555 F GAL . C1 ? ? F A2G 1 F GAL 2 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale6 covale both ? F A2G . O6 ? ? ? 1_555 F SIA . C2 ? ? F A2G 1 F SIA 3 1_555 ? ? ? ? ? ? ? 1.429 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 14 ? TYR A 16 ? ARG A 107 TYR A 109 A 2 SER A 19 ? LEU A 28 ? SER A 112 LEU A 121 A 3 HIS A 119 ? LYS A 126 ? HIS A 212 LYS A 219 A 4 THR A 43 ? LEU A 44 ? THR A 136 LEU A 137 B 1 ARG A 64 ? SER A 69 ? ARG A 157 SER A 162 B 2 CYS A 102 ? HIS A 106 ? CYS A 195 HIS A 199 B 3 LYS A 109 ? THR A 113 ? LYS A 202 THR A 206 C 1 ARG B 14 ? TYR B 16 ? ARG B 107 TYR B 109 C 2 SER B 19 ? LEU B 28 ? SER B 112 LEU B 121 C 3 HIS B 119 ? LYS B 126 ? HIS B 212 LYS B 219 C 4 THR B 43 ? LEU B 44 ? THR B 136 LEU B 137 D 1 ARG B 64 ? SER B 69 ? ARG B 157 SER B 162 D 2 CYS B 102 ? HIS B 106 ? CYS B 195 HIS B 199 D 3 LYS B 109 ? THR B 113 ? LYS B 202 THR B 206 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 14 ? N ARG A 107 O TYR A 21 ? O TYR A 114 A 2 3 N CYS A 20 ? N CYS A 113 O ARG A 125 ? O ARG A 218 A 3 4 O GLU A 124 ? O GLU A 217 N THR A 43 ? N THR A 136 B 1 2 N ARG A 64 ? N ARG A 157 O PHE A 105 ? O PHE A 198 B 2 3 N HIS A 106 ? N HIS A 199 O LYS A 109 ? O LYS A 202 C 1 2 N ARG B 14 ? N ARG B 107 O TYR B 21 ? O TYR B 114 C 2 3 N CYS B 20 ? N CYS B 113 O ARG B 125 ? O ARG B 218 C 3 4 O GLU B 124 ? O GLU B 217 N THR B 43 ? N THR B 136 D 1 2 N ARG B 64 ? N ARG B 157 O PHE B 105 ? O PHE B 198 D 2 3 N HIS B 106 ? N HIS B 199 O LYS B 109 ? O LYS B 202 # _database_PDB_matrix.entry_id 3WSR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WSR _atom_sites.fract_transf_matrix[1][1] 0.018393 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007720 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019534 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020047 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 94 ? ? ? A . n A 1 2 SER 2 95 ? ? ? A . n A 1 3 GLY 3 96 ? ? ? A . n A 1 4 HIS 4 97 ? ? ? A . n A 1 5 LYS 5 98 ? ? ? A . n A 1 6 SER 6 99 ? ? ? A . n A 1 7 SER 7 100 ? ? ? A . n A 1 8 PRO 8 101 101 PRO PRO A . n A 1 9 CYS 9 102 102 CYS CYS A . n A 1 10 ASP 10 103 103 ASP ASP A . n A 1 11 THR 11 104 104 THR THR A . n A 1 12 ASN 12 105 105 ASN ASN A . n A 1 13 TRP 13 106 106 TRP TRP A . n A 1 14 ARG 14 107 107 ARG ARG A . n A 1 15 TYR 15 108 108 TYR TYR A . n A 1 16 TYR 16 109 109 TYR TYR A . n A 1 17 GLY 17 110 110 GLY GLY A . n A 1 18 ASP 18 111 111 ASP ASP A . n A 1 19 SER 19 112 112 SER SER A . n A 1 20 CYS 20 113 113 CYS CYS A . n A 1 21 TYR 21 114 114 TYR TYR A . n A 1 22 GLY 22 115 115 GLY GLY A . n A 1 23 PHE 23 116 116 PHE PHE A . n A 1 24 PHE 24 117 117 PHE PHE A . n A 1 25 ARG 25 118 118 ARG ARG A . n A 1 26 HIS 26 119 119 HIS HIS A . n A 1 27 ASN 27 120 120 ASN ASN A . n A 1 28 LEU 28 121 121 LEU LEU A . n A 1 29 THR 29 122 122 THR THR A . n A 1 30 TRP 30 123 123 TRP TRP A . n A 1 31 GLU 31 124 124 GLU GLU A . n A 1 32 GLU 32 125 125 GLU GLU A . n A 1 33 SER 33 126 126 SER SER A . n A 1 34 LYS 34 127 127 LYS LYS A . n A 1 35 GLN 35 128 128 GLN GLN A . n A 1 36 TYR 36 129 129 TYR TYR A . n A 1 37 CYS 37 130 130 CYS CYS A . n A 1 38 THR 38 131 131 THR THR A . n A 1 39 ASP 39 132 132 ASP ASP A . n A 1 40 MET 40 133 133 MET MET A . n A 1 41 ASN 41 134 134 ASN ASN A . n A 1 42 ALA 42 135 135 ALA ALA A . n A 1 43 THR 43 136 136 THR THR A . n A 1 44 LEU 44 137 137 LEU LEU A . n A 1 45 LEU 45 138 138 LEU LEU A . n A 1 46 LYS 46 139 139 LYS LYS A . n A 1 47 ILE 47 140 140 ILE ILE A . n A 1 48 ASP 48 141 141 ASP ASP A . n A 1 49 ASN 49 142 142 ASN ASN A . n A 1 50 ARG 50 143 143 ARG ARG A . n A 1 51 ASN 51 144 144 ASN ASN A . n A 1 52 ILE 52 145 145 ILE ILE A . n A 1 53 VAL 53 146 146 VAL VAL A . n A 1 54 GLU 54 147 147 GLU GLU A . n A 1 55 TYR 55 148 148 TYR TYR A . n A 1 56 ILE 56 149 149 ILE ILE A . n A 1 57 LYS 57 150 150 LYS LYS A . n A 1 58 ALA 58 151 151 ALA ALA A . n A 1 59 ARG 59 152 152 ARG ARG A . n A 1 60 THR 60 153 153 THR THR A . n A 1 61 HIS 61 154 154 HIS HIS A . n A 1 62 LEU 62 155 155 LEU LEU A . n A 1 63 ILE 63 156 156 ILE ILE A . n A 1 64 ARG 64 157 157 ARG ARG A . n A 1 65 TRP 65 158 158 TRP TRP A . n A 1 66 VAL 66 159 159 VAL VAL A . n A 1 67 GLY 67 160 160 GLY GLY A . n A 1 68 LEU 68 161 161 LEU LEU A . n A 1 69 SER 69 162 162 SER SER A . n A 1 70 ARG 70 163 163 ARG ARG A . n A 1 71 GLN 71 164 164 GLN GLN A . n A 1 72 LYS 72 165 165 LYS LYS A . n A 1 73 SER 73 166 166 SER SER A . n A 1 74 ASN 74 167 167 ASN ASN A . n A 1 75 GLU 75 168 168 GLU GLU A . n A 1 76 VAL 76 169 169 VAL VAL A . n A 1 77 TRP 77 170 170 TRP TRP A . n A 1 78 LYS 78 171 171 LYS LYS A . n A 1 79 TRP 79 172 172 TRP TRP A . n A 1 80 GLU 80 173 173 GLU GLU A . n A 1 81 ASP 81 174 174 ASP ASP A . n A 1 82 GLY 82 175 175 GLY GLY A . n A 1 83 SER 83 176 176 SER SER A . n A 1 84 VAL 84 177 177 VAL VAL A . n A 1 85 ILE 85 178 178 ILE ILE A . n A 1 86 SER 86 179 179 SER SER A . n A 1 87 GLU 87 180 180 GLU GLU A . n A 1 88 ASN 88 181 181 ASN ASN A . n A 1 89 MET 89 182 182 MET MET A . n A 1 90 PHE 90 183 183 PHE PHE A . n A 1 91 GLU 91 184 184 GLU GLU A . n A 1 92 PHE 92 185 185 PHE PHE A . n A 1 93 LEU 93 186 186 LEU LEU A . n A 1 94 GLU 94 187 187 GLU GLU A . n A 1 95 ASP 95 188 188 ASP ASP A . n A 1 96 GLY 96 189 189 GLY GLY A . n A 1 97 LYS 97 190 190 LYS LYS A . n A 1 98 GLY 98 191 191 GLY GLY A . n A 1 99 ASN 99 192 192 ASN ASN A . n A 1 100 MET 100 193 193 MET MET A . n A 1 101 ASN 101 194 194 ASN ASN A . n A 1 102 CYS 102 195 195 CYS CYS A . n A 1 103 ALA 103 196 196 ALA ALA A . n A 1 104 TYR 104 197 197 TYR TYR A . n A 1 105 PHE 105 198 198 PHE PHE A . n A 1 106 HIS 106 199 199 HIS HIS A . n A 1 107 ASN 107 200 200 ASN ASN A . n A 1 108 GLY 108 201 201 GLY GLY A . n A 1 109 LYS 109 202 202 LYS LYS A . n A 1 110 MET 110 203 203 MET MET A . n A 1 111 HIS 111 204 204 HIS HIS A . n A 1 112 PRO 112 205 205 PRO PRO A . n A 1 113 THR 113 206 206 THR THR A . n A 1 114 PHE 114 207 207 PHE PHE A . n A 1 115 CYS 115 208 208 CYS CYS A . n A 1 116 GLU 116 209 209 GLU GLU A . n A 1 117 ASN 117 210 210 ASN ASN A . n A 1 118 LYS 118 211 211 LYS LYS A . n A 1 119 HIS 119 212 212 HIS HIS A . n A 1 120 TYR 120 213 213 TYR TYR A . n A 1 121 LEU 121 214 214 LEU LEU A . n A 1 122 MET 122 215 215 MET MET A . n A 1 123 CYS 123 216 216 CYS CYS A . n A 1 124 GLU 124 217 217 GLU GLU A . n A 1 125 ARG 125 218 218 ARG ARG A . n A 1 126 LYS 126 219 219 LYS LYS A . n A 1 127 ALA 127 220 220 ALA ALA A . n A 1 128 GLY 128 221 ? ? ? A . n B 1 1 GLY 1 94 ? ? ? B . n B 1 2 SER 2 95 ? ? ? B . n B 1 3 GLY 3 96 ? ? ? B . n B 1 4 HIS 4 97 ? ? ? B . n B 1 5 LYS 5 98 ? ? ? B . n B 1 6 SER 6 99 ? ? ? B . n B 1 7 SER 7 100 ? ? ? B . n B 1 8 PRO 8 101 101 PRO PRO B . n B 1 9 CYS 9 102 102 CYS CYS B . n B 1 10 ASP 10 103 103 ASP ASP B . n B 1 11 THR 11 104 104 THR THR B . n B 1 12 ASN 12 105 105 ASN ASN B . n B 1 13 TRP 13 106 106 TRP TRP B . n B 1 14 ARG 14 107 107 ARG ARG B . n B 1 15 TYR 15 108 108 TYR TYR B . n B 1 16 TYR 16 109 109 TYR TYR B . n B 1 17 GLY 17 110 110 GLY GLY B . n B 1 18 ASP 18 111 111 ASP ASP B . n B 1 19 SER 19 112 112 SER SER B . n B 1 20 CYS 20 113 113 CYS CYS B . n B 1 21 TYR 21 114 114 TYR TYR B . n B 1 22 GLY 22 115 115 GLY GLY B . n B 1 23 PHE 23 116 116 PHE PHE B . n B 1 24 PHE 24 117 117 PHE PHE B . n B 1 25 ARG 25 118 118 ARG ARG B . n B 1 26 HIS 26 119 119 HIS HIS B . n B 1 27 ASN 27 120 120 ASN ASN B . n B 1 28 LEU 28 121 121 LEU LEU B . n B 1 29 THR 29 122 122 THR THR B . n B 1 30 TRP 30 123 123 TRP TRP B . n B 1 31 GLU 31 124 124 GLU GLU B . n B 1 32 GLU 32 125 125 GLU GLU B . n B 1 33 SER 33 126 126 SER SER B . n B 1 34 LYS 34 127 127 LYS LYS B . n B 1 35 GLN 35 128 128 GLN GLN B . n B 1 36 TYR 36 129 129 TYR TYR B . n B 1 37 CYS 37 130 130 CYS CYS B . n B 1 38 THR 38 131 131 THR THR B . n B 1 39 ASP 39 132 132 ASP ASP B . n B 1 40 MET 40 133 133 MET MET B . n B 1 41 ASN 41 134 134 ASN ASN B . n B 1 42 ALA 42 135 135 ALA ALA B . n B 1 43 THR 43 136 136 THR THR B . n B 1 44 LEU 44 137 137 LEU LEU B . n B 1 45 LEU 45 138 138 LEU LEU B . n B 1 46 LYS 46 139 139 LYS LYS B . n B 1 47 ILE 47 140 140 ILE ILE B . n B 1 48 ASP 48 141 141 ASP ASP B . n B 1 49 ASN 49 142 142 ASN ASN B . n B 1 50 ARG 50 143 143 ARG ARG B . n B 1 51 ASN 51 144 144 ASN ASN B . n B 1 52 ILE 52 145 145 ILE ILE B . n B 1 53 VAL 53 146 146 VAL VAL B . n B 1 54 GLU 54 147 147 GLU GLU B . n B 1 55 TYR 55 148 148 TYR TYR B . n B 1 56 ILE 56 149 149 ILE ILE B . n B 1 57 LYS 57 150 150 LYS LYS B . n B 1 58 ALA 58 151 151 ALA ALA B . n B 1 59 ARG 59 152 152 ARG ARG B . n B 1 60 THR 60 153 153 THR THR B . n B 1 61 HIS 61 154 154 HIS HIS B . n B 1 62 LEU 62 155 155 LEU LEU B . n B 1 63 ILE 63 156 156 ILE ILE B . n B 1 64 ARG 64 157 157 ARG ARG B . n B 1 65 TRP 65 158 158 TRP TRP B . n B 1 66 VAL 66 159 159 VAL VAL B . n B 1 67 GLY 67 160 160 GLY GLY B . n B 1 68 LEU 68 161 161 LEU LEU B . n B 1 69 SER 69 162 162 SER SER B . n B 1 70 ARG 70 163 163 ARG ARG B . n B 1 71 GLN 71 164 164 GLN GLN B . n B 1 72 LYS 72 165 165 LYS LYS B . n B 1 73 SER 73 166 166 SER SER B . n B 1 74 ASN 74 167 167 ASN ASN B . n B 1 75 GLU 75 168 168 GLU GLU B . n B 1 76 VAL 76 169 169 VAL VAL B . n B 1 77 TRP 77 170 170 TRP TRP B . n B 1 78 LYS 78 171 171 LYS LYS B . n B 1 79 TRP 79 172 172 TRP TRP B . n B 1 80 GLU 80 173 173 GLU GLU B . n B 1 81 ASP 81 174 174 ASP ASP B . n B 1 82 GLY 82 175 175 GLY GLY B . n B 1 83 SER 83 176 176 SER SER B . n B 1 84 VAL 84 177 177 VAL VAL B . n B 1 85 ILE 85 178 178 ILE ILE B . n B 1 86 SER 86 179 179 SER SER B . n B 1 87 GLU 87 180 180 GLU GLU B . n B 1 88 ASN 88 181 181 ASN ASN B . n B 1 89 MET 89 182 182 MET MET B . n B 1 90 PHE 90 183 183 PHE PHE B . n B 1 91 GLU 91 184 184 GLU GLU B . n B 1 92 PHE 92 185 185 PHE PHE B . n B 1 93 LEU 93 186 186 LEU LEU B . n B 1 94 GLU 94 187 187 GLU GLU B . n B 1 95 ASP 95 188 188 ASP ASP B . n B 1 96 GLY 96 189 189 GLY GLY B . n B 1 97 LYS 97 190 190 LYS LYS B . n B 1 98 GLY 98 191 191 GLY GLY B . n B 1 99 ASN 99 192 192 ASN ASN B . n B 1 100 MET 100 193 193 MET MET B . n B 1 101 ASN 101 194 194 ASN ASN B . n B 1 102 CYS 102 195 195 CYS CYS B . n B 1 103 ALA 103 196 196 ALA ALA B . n B 1 104 TYR 104 197 197 TYR TYR B . n B 1 105 PHE 105 198 198 PHE PHE B . n B 1 106 HIS 106 199 199 HIS HIS B . n B 1 107 ASN 107 200 200 ASN ASN B . n B 1 108 GLY 108 201 201 GLY GLY B . n B 1 109 LYS 109 202 202 LYS LYS B . n B 1 110 MET 110 203 203 MET MET B . n B 1 111 HIS 111 204 204 HIS HIS B . n B 1 112 PRO 112 205 205 PRO PRO B . n B 1 113 THR 113 206 206 THR THR B . n B 1 114 PHE 114 207 207 PHE PHE B . n B 1 115 CYS 115 208 208 CYS CYS B . n B 1 116 GLU 116 209 209 GLU GLU B . n B 1 117 ASN 117 210 210 ASN ASN B . n B 1 118 LYS 118 211 211 LYS LYS B . n B 1 119 HIS 119 212 212 HIS HIS B . n B 1 120 TYR 120 213 213 TYR TYR B . n B 1 121 LEU 121 214 214 LEU LEU B . n B 1 122 MET 122 215 215 MET MET B . n B 1 123 CYS 123 216 216 CYS CYS B . n B 1 124 GLU 124 217 217 GLU GLU B . n B 1 125 ARG 125 218 218 ARG ARG B . n B 1 126 LYS 126 219 219 LYS LYS B . n B 1 127 ALA 127 220 220 ALA ALA B . n B 1 128 GLY 128 221 ? ? ? B . n C 2 1 GLU 1 38 ? ? ? C . n C 2 2 GLY 2 39 ? ? ? C . n C 2 3 GLY 3 40 ? ? ? C . n C 2 4 VAL 4 41 ? ? ? C . n C 2 5 ALA 5 42 ? ? ? C . n C 2 6 MET 6 43 ? ? ? C . n C 2 7 PRO 7 44 ? ? ? C . n C 2 8 GLY 8 45 ? ? ? C . n C 2 9 ALA 9 46 46 ALA ALA C . n C 2 10 GLU 10 47 47 GLU GLU C . n C 2 11 ASP 11 48 48 ASP ASP C . n C 2 12 ASP 12 49 49 ASP ASP C . n C 2 13 VAL 13 50 50 VAL VAL C . n C 2 14 VAL 14 51 51 VAL VAL C . n C 2 15 THR 15 52 52 THR THR C . n C 2 16 PRO 16 53 53 PRO PRO C . n C 2 17 GLY 17 54 54 GLY GLY C . n C 2 18 CYS 18 55 55 CYS CYS C . n D 2 1 GLU 1 38 ? ? ? D . n D 2 2 GLY 2 39 ? ? ? D . n D 2 3 GLY 3 40 ? ? ? D . n D 2 4 VAL 4 41 ? ? ? D . n D 2 5 ALA 5 42 ? ? ? D . n D 2 6 MET 6 43 ? ? ? D . n D 2 7 PRO 7 44 ? ? ? D . n D 2 8 GLY 8 45 45 GLY GLY D . n D 2 9 ALA 9 46 46 ALA ALA D . n D 2 10 GLU 10 47 47 GLU GLU D . n D 2 11 ASP 11 48 48 ASP ASP D . n D 2 12 ASP 12 49 49 ASP ASP D . n D 2 13 VAL 13 50 50 VAL VAL D . n D 2 14 VAL 14 51 51 VAL VAL D . n D 2 15 THR 15 52 52 THR THR D . n D 2 16 PRO 16 53 53 PRO PRO D . n D 2 17 GLY 17 54 54 GLY GLY D . n D 2 18 CYS 18 55 55 CYS CYS D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HOH 1 301 1 HOH HOH A . G 4 HOH 2 302 3 HOH HOH A . G 4 HOH 3 303 4 HOH HOH A . G 4 HOH 4 304 5 HOH HOH A . G 4 HOH 5 305 6 HOH HOH A . G 4 HOH 6 306 12 HOH HOH A . G 4 HOH 7 307 13 HOH HOH A . G 4 HOH 8 308 14 HOH HOH A . G 4 HOH 9 309 15 HOH HOH A . G 4 HOH 10 310 16 HOH HOH A . G 4 HOH 11 311 17 HOH HOH A . G 4 HOH 12 312 18 HOH HOH A . G 4 HOH 13 313 19 HOH HOH A . G 4 HOH 14 314 20 HOH HOH A . G 4 HOH 15 315 29 HOH HOH A . G 4 HOH 16 316 30 HOH HOH A . G 4 HOH 17 317 31 HOH HOH A . G 4 HOH 18 318 32 HOH HOH A . G 4 HOH 19 319 33 HOH HOH A . G 4 HOH 20 320 34 HOH HOH A . G 4 HOH 21 321 26 HOH HOH A . H 4 HOH 1 301 8 HOH HOH B . H 4 HOH 2 302 9 HOH HOH B . H 4 HOH 3 303 10 HOH HOH B . H 4 HOH 4 304 11 HOH HOH B . H 4 HOH 5 305 22 HOH HOH B . H 4 HOH 6 306 23 HOH HOH B . H 4 HOH 7 307 24 HOH HOH B . H 4 HOH 8 308 25 HOH HOH B . H 4 HOH 9 309 27 HOH HOH B . H 4 HOH 10 310 28 HOH HOH B . H 4 HOH 11 311 35 HOH HOH B . H 4 HOH 12 312 36 HOH HOH B . I 4 HOH 1 1101 2 HOH HOH C . J 4 HOH 1 1101 7 HOH HOH D . J 4 HOH 2 1102 21 HOH HOH D . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 C THR 15 C THR 52 ? THR 'GLYCOSYLATION SITE' 2 D THR 15 D THR 52 ? THR 'GLYCOSYLATION SITE' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,E,G,I 2 1 B,D,F,H,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1720 ? 1 MORE 11 ? 1 'SSA (A^2)' 7550 ? 2 'ABSA (A^2)' 1820 ? 2 MORE 10 ? 2 'SSA (A^2)' 7440 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-22 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-11-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' atom_site 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' struct_asym 15 4 'Structure model' struct_conn 16 4 'Structure model' struct_ref_seq_dif 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 23 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.name' 2 4 'Structure model' '_atom_site.B_iso_or_equiv' 3 4 'Structure model' '_atom_site.Cartn_x' 4 4 'Structure model' '_atom_site.Cartn_y' 5 4 'Structure model' '_atom_site.Cartn_z' 6 4 'Structure model' '_atom_site.auth_asym_id' 7 4 'Structure model' '_atom_site.auth_atom_id' 8 4 'Structure model' '_atom_site.auth_comp_id' 9 4 'Structure model' '_atom_site.auth_seq_id' 10 4 'Structure model' '_atom_site.label_asym_id' 11 4 'Structure model' '_atom_site.label_atom_id' 12 4 'Structure model' '_atom_site.label_comp_id' 13 4 'Structure model' '_atom_site.label_entity_id' 14 4 'Structure model' '_atom_site.type_symbol' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_chem_comp.pdbx_synonyms' 36 5 'Structure model' '_database_2.pdbx_DOI' 37 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SERGUI 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.8.0049 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 315 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 316 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_645 _pdbx_validate_symm_contact.dist 1.98 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 LEU _pdbx_validate_rmsd_angle.auth_seq_id_1 214 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 LEU _pdbx_validate_rmsd_angle.auth_seq_id_2 214 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 LEU _pdbx_validate_rmsd_angle.auth_seq_id_3 214 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 131.04 _pdbx_validate_rmsd_angle.angle_target_value 115.30 _pdbx_validate_rmsd_angle.angle_deviation 15.74 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 192 ? ? 57.90 18.62 2 1 ASN B 105 ? ? 75.56 -1.34 3 1 ILE B 140 ? ? -100.20 79.62 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 111 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 SER _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 112 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -147.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 94 ? A GLY 1 2 1 Y 1 A SER 95 ? A SER 2 3 1 Y 1 A GLY 96 ? A GLY 3 4 1 Y 1 A HIS 97 ? A HIS 4 5 1 Y 1 A LYS 98 ? A LYS 5 6 1 Y 1 A SER 99 ? A SER 6 7 1 Y 1 A SER 100 ? A SER 7 8 1 Y 1 A GLY 221 ? A GLY 128 9 1 Y 1 B GLY 94 ? B GLY 1 10 1 Y 1 B SER 95 ? B SER 2 11 1 Y 1 B GLY 96 ? B GLY 3 12 1 Y 1 B HIS 97 ? B HIS 4 13 1 Y 1 B LYS 98 ? B LYS 5 14 1 Y 1 B SER 99 ? B SER 6 15 1 Y 1 B SER 100 ? B SER 7 16 1 Y 1 B GLY 221 ? B GLY 128 17 1 Y 1 C GLU 38 ? C GLU 1 18 1 Y 1 C GLY 39 ? C GLY 2 19 1 Y 1 C GLY 40 ? C GLY 3 20 1 Y 1 C VAL 41 ? C VAL 4 21 1 Y 1 C ALA 42 ? C ALA 5 22 1 Y 1 C MET 43 ? C MET 6 23 1 Y 1 C PRO 44 ? C PRO 7 24 1 Y 1 C GLY 45 ? C GLY 8 25 1 Y 1 D GLU 38 ? D GLU 1 26 1 Y 1 D GLY 39 ? D GLY 2 27 1 Y 1 D GLY 40 ? D GLY 3 28 1 Y 1 D VAL 41 ? D VAL 4 29 1 Y 1 D ALA 42 ? D ALA 5 30 1 Y 1 D MET 43 ? D MET 6 31 1 Y 1 D PRO 44 ? D PRO 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A2G O5 O N N 1 A2G C1 C N S 2 A2G O1 O N N 3 A2G C2 C N R 4 A2G N2 N N N 5 A2G C3 C N R 6 A2G O3 O N N 7 A2G C4 C N R 8 A2G O4 O N N 9 A2G C5 C N R 10 A2G C6 C N N 11 A2G O6 O N N 12 A2G C7 C N N 13 A2G O7 O N N 14 A2G C8 C N N 15 A2G H1 H N N 16 A2G HO1 H N N 17 A2G H2 H N N 18 A2G HN2 H N N 19 A2G H3 H N N 20 A2G HO3 H N N 21 A2G H4 H N N 22 A2G HO4 H N N 23 A2G H5 H N N 24 A2G H61 H N N 25 A2G H81 H N N 26 A2G H82 H N N 27 A2G H83 H N N 28 A2G H62 H N N 29 A2G HO6 H N N 30 ALA N N N N 31 ALA CA C N S 32 ALA C C N N 33 ALA O O N N 34 ALA CB C N N 35 ALA OXT O N N 36 ALA H H N N 37 ALA H2 H N N 38 ALA HA H N N 39 ALA HB1 H N N 40 ALA HB2 H N N 41 ALA HB3 H N N 42 ALA HXT H N N 43 ARG N N N N 44 ARG CA C N S 45 ARG C C N N 46 ARG O O N N 47 ARG CB C N N 48 ARG CG C N N 49 ARG CD C N N 50 ARG NE N N N 51 ARG CZ C N N 52 ARG NH1 N N N 53 ARG NH2 N N N 54 ARG OXT O N N 55 ARG H H N N 56 ARG H2 H N N 57 ARG HA H N N 58 ARG HB2 H N N 59 ARG HB3 H N N 60 ARG HG2 H N N 61 ARG HG3 H N N 62 ARG HD2 H N N 63 ARG HD3 H N N 64 ARG HE H N N 65 ARG HH11 H N N 66 ARG HH12 H N N 67 ARG HH21 H N N 68 ARG HH22 H N N 69 ARG HXT H N N 70 ASN N N N N 71 ASN CA C N S 72 ASN C C N N 73 ASN O O N N 74 ASN CB C N N 75 ASN CG C N N 76 ASN OD1 O N N 77 ASN ND2 N N N 78 ASN OXT O N N 79 ASN H H N N 80 ASN H2 H N N 81 ASN HA H N N 82 ASN HB2 H N N 83 ASN HB3 H N N 84 ASN HD21 H N N 85 ASN HD22 H N N 86 ASN HXT H N N 87 ASP N N N N 88 ASP CA C N S 89 ASP C C N N 90 ASP O O N N 91 ASP CB C N N 92 ASP CG C N N 93 ASP OD1 O N N 94 ASP OD2 O N N 95 ASP OXT O N N 96 ASP H H N N 97 ASP H2 H N N 98 ASP HA H N N 99 ASP HB2 H N N 100 ASP HB3 H N N 101 ASP HD2 H N N 102 ASP HXT H N N 103 CYS N N N N 104 CYS CA C N R 105 CYS C C N N 106 CYS O O N N 107 CYS CB C N N 108 CYS SG S N N 109 CYS OXT O N N 110 CYS H H N N 111 CYS H2 H N N 112 CYS HA H N N 113 CYS HB2 H N N 114 CYS HB3 H N N 115 CYS HG H N N 116 CYS HXT H N N 117 GAL C1 C N R 118 GAL C2 C N R 119 GAL C3 C N S 120 GAL C4 C N R 121 GAL C5 C N R 122 GAL C6 C N N 123 GAL O1 O N N 124 GAL O2 O N N 125 GAL O3 O N N 126 GAL O4 O N N 127 GAL O5 O N N 128 GAL O6 O N N 129 GAL H1 H N N 130 GAL H2 H N N 131 GAL H3 H N N 132 GAL H4 H N N 133 GAL H5 H N N 134 GAL H61 H N N 135 GAL H62 H N N 136 GAL HO1 H N N 137 GAL HO2 H N N 138 GAL HO3 H N N 139 GAL HO4 H N N 140 GAL HO6 H N N 141 GLN N N N N 142 GLN CA C N S 143 GLN C C N N 144 GLN O O N N 145 GLN CB C N N 146 GLN CG C N N 147 GLN CD C N N 148 GLN OE1 O N N 149 GLN NE2 N N N 150 GLN OXT O N N 151 GLN H H N N 152 GLN H2 H N N 153 GLN HA H N N 154 GLN HB2 H N N 155 GLN HB3 H N N 156 GLN HG2 H N N 157 GLN HG3 H N N 158 GLN HE21 H N N 159 GLN HE22 H N N 160 GLN HXT H N N 161 GLU N N N N 162 GLU CA C N S 163 GLU C C N N 164 GLU O O N N 165 GLU CB C N N 166 GLU CG C N N 167 GLU CD C N N 168 GLU OE1 O N N 169 GLU OE2 O N N 170 GLU OXT O N N 171 GLU H H N N 172 GLU H2 H N N 173 GLU HA H N N 174 GLU HB2 H N N 175 GLU HB3 H N N 176 GLU HG2 H N N 177 GLU HG3 H N N 178 GLU HE2 H N N 179 GLU HXT H N N 180 GLY N N N N 181 GLY CA C N N 182 GLY C C N N 183 GLY O O N N 184 GLY OXT O N N 185 GLY H H N N 186 GLY H2 H N N 187 GLY HA2 H N N 188 GLY HA3 H N N 189 GLY HXT H N N 190 HIS N N N N 191 HIS CA C N S 192 HIS C C N N 193 HIS O O N N 194 HIS CB C N N 195 HIS CG C Y N 196 HIS ND1 N Y N 197 HIS CD2 C Y N 198 HIS CE1 C Y N 199 HIS NE2 N Y N 200 HIS OXT O N N 201 HIS H H N N 202 HIS H2 H N N 203 HIS HA H N N 204 HIS HB2 H N N 205 HIS HB3 H N N 206 HIS HD1 H N N 207 HIS HD2 H N N 208 HIS HE1 H N N 209 HIS HE2 H N N 210 HIS HXT H N N 211 HOH O O N N 212 HOH H1 H N N 213 HOH H2 H N N 214 ILE N N N N 215 ILE CA C N S 216 ILE C C N N 217 ILE O O N N 218 ILE CB C N S 219 ILE CG1 C N N 220 ILE CG2 C N N 221 ILE CD1 C N N 222 ILE OXT O N N 223 ILE H H N N 224 ILE H2 H N N 225 ILE HA H N N 226 ILE HB H N N 227 ILE HG12 H N N 228 ILE HG13 H N N 229 ILE HG21 H N N 230 ILE HG22 H N N 231 ILE HG23 H N N 232 ILE HD11 H N N 233 ILE HD12 H N N 234 ILE HD13 H N N 235 ILE HXT H N N 236 LEU N N N N 237 LEU CA C N S 238 LEU C C N N 239 LEU O O N N 240 LEU CB C N N 241 LEU CG C N N 242 LEU CD1 C N N 243 LEU CD2 C N N 244 LEU OXT O N N 245 LEU H H N N 246 LEU H2 H N N 247 LEU HA H N N 248 LEU HB2 H N N 249 LEU HB3 H N N 250 LEU HG H N N 251 LEU HD11 H N N 252 LEU HD12 H N N 253 LEU HD13 H N N 254 LEU HD21 H N N 255 LEU HD22 H N N 256 LEU HD23 H N N 257 LEU HXT H N N 258 LYS N N N N 259 LYS CA C N S 260 LYS C C N N 261 LYS O O N N 262 LYS CB C N N 263 LYS CG C N N 264 LYS CD C N N 265 LYS CE C N N 266 LYS NZ N N N 267 LYS OXT O N N 268 LYS H H N N 269 LYS H2 H N N 270 LYS HA H N N 271 LYS HB2 H N N 272 LYS HB3 H N N 273 LYS HG2 H N N 274 LYS HG3 H N N 275 LYS HD2 H N N 276 LYS HD3 H N N 277 LYS HE2 H N N 278 LYS HE3 H N N 279 LYS HZ1 H N N 280 LYS HZ2 H N N 281 LYS HZ3 H N N 282 LYS HXT H N N 283 MET N N N N 284 MET CA C N S 285 MET C C N N 286 MET O O N N 287 MET CB C N N 288 MET CG C N N 289 MET SD S N N 290 MET CE C N N 291 MET OXT O N N 292 MET H H N N 293 MET H2 H N N 294 MET HA H N N 295 MET HB2 H N N 296 MET HB3 H N N 297 MET HG2 H N N 298 MET HG3 H N N 299 MET HE1 H N N 300 MET HE2 H N N 301 MET HE3 H N N 302 MET HXT H N N 303 PHE N N N N 304 PHE CA C N S 305 PHE C C N N 306 PHE O O N N 307 PHE CB C N N 308 PHE CG C Y N 309 PHE CD1 C Y N 310 PHE CD2 C Y N 311 PHE CE1 C Y N 312 PHE CE2 C Y N 313 PHE CZ C Y N 314 PHE OXT O N N 315 PHE H H N N 316 PHE H2 H N N 317 PHE HA H N N 318 PHE HB2 H N N 319 PHE HB3 H N N 320 PHE HD1 H N N 321 PHE HD2 H N N 322 PHE HE1 H N N 323 PHE HE2 H N N 324 PHE HZ H N N 325 PHE HXT H N N 326 PRO N N N N 327 PRO CA C N S 328 PRO C C N N 329 PRO O O N N 330 PRO CB C N N 331 PRO CG C N N 332 PRO CD C N N 333 PRO OXT O N N 334 PRO H H N N 335 PRO HA H N N 336 PRO HB2 H N N 337 PRO HB3 H N N 338 PRO HG2 H N N 339 PRO HG3 H N N 340 PRO HD2 H N N 341 PRO HD3 H N N 342 PRO HXT H N N 343 SER N N N N 344 SER CA C N S 345 SER C C N N 346 SER O O N N 347 SER CB C N N 348 SER OG O N N 349 SER OXT O N N 350 SER H H N N 351 SER H2 H N N 352 SER HA H N N 353 SER HB2 H N N 354 SER HB3 H N N 355 SER HG H N N 356 SER HXT H N N 357 SIA C1 C N N 358 SIA C2 C N R 359 SIA C3 C N N 360 SIA C4 C N S 361 SIA C5 C N R 362 SIA C6 C N R 363 SIA C7 C N R 364 SIA C8 C N R 365 SIA C9 C N N 366 SIA C10 C N N 367 SIA C11 C N N 368 SIA N5 N N N 369 SIA O1A O N N 370 SIA O1B O N N 371 SIA O2 O N N 372 SIA O4 O N N 373 SIA O6 O N N 374 SIA O7 O N N 375 SIA O8 O N N 376 SIA O9 O N N 377 SIA O10 O N N 378 SIA H32 H N N 379 SIA H31 H N N 380 SIA H4 H N N 381 SIA H5 H N N 382 SIA H6 H N N 383 SIA H7 H N N 384 SIA H8 H N N 385 SIA H92 H N N 386 SIA H91 H N N 387 SIA H111 H N N 388 SIA H113 H N N 389 SIA H112 H N N 390 SIA HN5 H N N 391 SIA HO1B H N N 392 SIA HO2 H N N 393 SIA HO4 H N N 394 SIA HO7 H N N 395 SIA HO8 H N N 396 SIA HO9 H N N 397 THR N N N N 398 THR CA C N S 399 THR C C N N 400 THR O O N N 401 THR CB C N R 402 THR OG1 O N N 403 THR CG2 C N N 404 THR OXT O N N 405 THR H H N N 406 THR H2 H N N 407 THR HA H N N 408 THR HB H N N 409 THR HG1 H N N 410 THR HG21 H N N 411 THR HG22 H N N 412 THR HG23 H N N 413 THR HXT H N N 414 TRP N N N N 415 TRP CA C N S 416 TRP C C N N 417 TRP O O N N 418 TRP CB C N N 419 TRP CG C Y N 420 TRP CD1 C Y N 421 TRP CD2 C Y N 422 TRP NE1 N Y N 423 TRP CE2 C Y N 424 TRP CE3 C Y N 425 TRP CZ2 C Y N 426 TRP CZ3 C Y N 427 TRP CH2 C Y N 428 TRP OXT O N N 429 TRP H H N N 430 TRP H2 H N N 431 TRP HA H N N 432 TRP HB2 H N N 433 TRP HB3 H N N 434 TRP HD1 H N N 435 TRP HE1 H N N 436 TRP HE3 H N N 437 TRP HZ2 H N N 438 TRP HZ3 H N N 439 TRP HH2 H N N 440 TRP HXT H N N 441 TYR N N N N 442 TYR CA C N S 443 TYR C C N N 444 TYR O O N N 445 TYR CB C N N 446 TYR CG C Y N 447 TYR CD1 C Y N 448 TYR CD2 C Y N 449 TYR CE1 C Y N 450 TYR CE2 C Y N 451 TYR CZ C Y N 452 TYR OH O N N 453 TYR OXT O N N 454 TYR H H N N 455 TYR H2 H N N 456 TYR HA H N N 457 TYR HB2 H N N 458 TYR HB3 H N N 459 TYR HD1 H N N 460 TYR HD2 H N N 461 TYR HE1 H N N 462 TYR HE2 H N N 463 TYR HH H N N 464 TYR HXT H N N 465 VAL N N N N 466 VAL CA C N S 467 VAL C C N N 468 VAL O O N N 469 VAL CB C N N 470 VAL CG1 C N N 471 VAL CG2 C N N 472 VAL OXT O N N 473 VAL H H N N 474 VAL H2 H N N 475 VAL HA H N N 476 VAL HB H N N 477 VAL HG11 H N N 478 VAL HG12 H N N 479 VAL HG13 H N N 480 VAL HG21 H N N 481 VAL HG22 H N N 482 VAL HG23 H N N 483 VAL HXT H N N 484 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A2G O5 C5 sing N N 1 A2G C1 O5 sing N N 2 A2G C1 C2 sing N N 3 A2G C1 H1 sing N N 4 A2G O1 C1 sing N N 5 A2G O1 HO1 sing N N 6 A2G C2 C3 sing N N 7 A2G C2 H2 sing N N 8 A2G N2 C2 sing N N 9 A2G N2 HN2 sing N N 10 A2G C3 C4 sing N N 11 A2G C3 O3 sing N N 12 A2G C3 H3 sing N N 13 A2G O3 HO3 sing N N 14 A2G C4 O4 sing N N 15 A2G C4 H4 sing N N 16 A2G O4 HO4 sing N N 17 A2G C5 C4 sing N N 18 A2G C5 C6 sing N N 19 A2G C5 H5 sing N N 20 A2G C6 O6 sing N N 21 A2G C6 H61 sing N N 22 A2G C7 N2 sing N N 23 A2G O7 C7 doub N N 24 A2G C8 C7 sing N N 25 A2G C8 H81 sing N N 26 A2G C8 H82 sing N N 27 A2G C8 H83 sing N N 28 A2G C6 H62 sing N N 29 A2G O6 HO6 sing N N 30 ALA N CA sing N N 31 ALA N H sing N N 32 ALA N H2 sing N N 33 ALA CA C sing N N 34 ALA CA CB sing N N 35 ALA CA HA sing N N 36 ALA C O doub N N 37 ALA C OXT sing N N 38 ALA CB HB1 sing N N 39 ALA CB HB2 sing N N 40 ALA CB HB3 sing N N 41 ALA OXT HXT sing N N 42 ARG N CA sing N N 43 ARG N H sing N N 44 ARG N H2 sing N N 45 ARG CA C sing N N 46 ARG CA CB sing N N 47 ARG CA HA sing N N 48 ARG C O doub N N 49 ARG C OXT sing N N 50 ARG CB CG sing N N 51 ARG CB HB2 sing N N 52 ARG CB HB3 sing N N 53 ARG CG CD sing N N 54 ARG CG HG2 sing N N 55 ARG CG HG3 sing N N 56 ARG CD NE sing N N 57 ARG CD HD2 sing N N 58 ARG CD HD3 sing N N 59 ARG NE CZ sing N N 60 ARG NE HE sing N N 61 ARG CZ NH1 sing N N 62 ARG CZ NH2 doub N N 63 ARG NH1 HH11 sing N N 64 ARG NH1 HH12 sing N N 65 ARG NH2 HH21 sing N N 66 ARG NH2 HH22 sing N N 67 ARG OXT HXT sing N N 68 ASN N CA sing N N 69 ASN N H sing N N 70 ASN N H2 sing N N 71 ASN CA C sing N N 72 ASN CA CB sing N N 73 ASN CA HA sing N N 74 ASN C O doub N N 75 ASN C OXT sing N N 76 ASN CB CG sing N N 77 ASN CB HB2 sing N N 78 ASN CB HB3 sing N N 79 ASN CG OD1 doub N N 80 ASN CG ND2 sing N N 81 ASN ND2 HD21 sing N N 82 ASN ND2 HD22 sing N N 83 ASN OXT HXT sing N N 84 ASP N CA sing N N 85 ASP N H sing N N 86 ASP N H2 sing N N 87 ASP CA C sing N N 88 ASP CA CB sing N N 89 ASP CA HA sing N N 90 ASP C O doub N N 91 ASP C OXT sing N N 92 ASP CB CG sing N N 93 ASP CB HB2 sing N N 94 ASP CB HB3 sing N N 95 ASP CG OD1 doub N N 96 ASP CG OD2 sing N N 97 ASP OD2 HD2 sing N N 98 ASP OXT HXT sing N N 99 CYS N CA sing N N 100 CYS N H sing N N 101 CYS N H2 sing N N 102 CYS CA C sing N N 103 CYS CA CB sing N N 104 CYS CA HA sing N N 105 CYS C O doub N N 106 CYS C OXT sing N N 107 CYS CB SG sing N N 108 CYS CB HB2 sing N N 109 CYS CB HB3 sing N N 110 CYS SG HG sing N N 111 CYS OXT HXT sing N N 112 GAL C1 C2 sing N N 113 GAL C1 O1 sing N N 114 GAL C1 O5 sing N N 115 GAL C1 H1 sing N N 116 GAL C2 C3 sing N N 117 GAL C2 O2 sing N N 118 GAL C2 H2 sing N N 119 GAL C3 C4 sing N N 120 GAL C3 O3 sing N N 121 GAL C3 H3 sing N N 122 GAL C4 C5 sing N N 123 GAL C4 O4 sing N N 124 GAL C4 H4 sing N N 125 GAL C5 C6 sing N N 126 GAL C5 O5 sing N N 127 GAL C5 H5 sing N N 128 GAL C6 O6 sing N N 129 GAL C6 H61 sing N N 130 GAL C6 H62 sing N N 131 GAL O1 HO1 sing N N 132 GAL O2 HO2 sing N N 133 GAL O3 HO3 sing N N 134 GAL O4 HO4 sing N N 135 GAL O6 HO6 sing N N 136 GLN N CA sing N N 137 GLN N H sing N N 138 GLN N H2 sing N N 139 GLN CA C sing N N 140 GLN CA CB sing N N 141 GLN CA HA sing N N 142 GLN C O doub N N 143 GLN C OXT sing N N 144 GLN CB CG sing N N 145 GLN CB HB2 sing N N 146 GLN CB HB3 sing N N 147 GLN CG CD sing N N 148 GLN CG HG2 sing N N 149 GLN CG HG3 sing N N 150 GLN CD OE1 doub N N 151 GLN CD NE2 sing N N 152 GLN NE2 HE21 sing N N 153 GLN NE2 HE22 sing N N 154 GLN OXT HXT sing N N 155 GLU N CA sing N N 156 GLU N H sing N N 157 GLU N H2 sing N N 158 GLU CA C sing N N 159 GLU CA CB sing N N 160 GLU CA HA sing N N 161 GLU C O doub N N 162 GLU C OXT sing N N 163 GLU CB CG sing N N 164 GLU CB HB2 sing N N 165 GLU CB HB3 sing N N 166 GLU CG CD sing N N 167 GLU CG HG2 sing N N 168 GLU CG HG3 sing N N 169 GLU CD OE1 doub N N 170 GLU CD OE2 sing N N 171 GLU OE2 HE2 sing N N 172 GLU OXT HXT sing N N 173 GLY N CA sing N N 174 GLY N H sing N N 175 GLY N H2 sing N N 176 GLY CA C sing N N 177 GLY CA HA2 sing N N 178 GLY CA HA3 sing N N 179 GLY C O doub N N 180 GLY C OXT sing N N 181 GLY OXT HXT sing N N 182 HIS N CA sing N N 183 HIS N H sing N N 184 HIS N H2 sing N N 185 HIS CA C sing N N 186 HIS CA CB sing N N 187 HIS CA HA sing N N 188 HIS C O doub N N 189 HIS C OXT sing N N 190 HIS CB CG sing N N 191 HIS CB HB2 sing N N 192 HIS CB HB3 sing N N 193 HIS CG ND1 sing Y N 194 HIS CG CD2 doub Y N 195 HIS ND1 CE1 doub Y N 196 HIS ND1 HD1 sing N N 197 HIS CD2 NE2 sing Y N 198 HIS CD2 HD2 sing N N 199 HIS CE1 NE2 sing Y N 200 HIS CE1 HE1 sing N N 201 HIS NE2 HE2 sing N N 202 HIS OXT HXT sing N N 203 HOH O H1 sing N N 204 HOH O H2 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 SIA C1 C2 sing N N 344 SIA C1 O1A doub N N 345 SIA C1 O1B sing N N 346 SIA C2 C3 sing N N 347 SIA C2 O2 sing N N 348 SIA C2 O6 sing N N 349 SIA C3 C4 sing N N 350 SIA C3 H32 sing N N 351 SIA C3 H31 sing N N 352 SIA C4 C5 sing N N 353 SIA C4 O4 sing N N 354 SIA C4 H4 sing N N 355 SIA C5 C6 sing N N 356 SIA C5 N5 sing N N 357 SIA C5 H5 sing N N 358 SIA C6 C7 sing N N 359 SIA C6 O6 sing N N 360 SIA C6 H6 sing N N 361 SIA C7 C8 sing N N 362 SIA C7 O7 sing N N 363 SIA C7 H7 sing N N 364 SIA C8 C9 sing N N 365 SIA C8 O8 sing N N 366 SIA C8 H8 sing N N 367 SIA C9 O9 sing N N 368 SIA C9 H92 sing N N 369 SIA C9 H91 sing N N 370 SIA C10 C11 sing N N 371 SIA C10 N5 sing N N 372 SIA C10 O10 doub N N 373 SIA C11 H111 sing N N 374 SIA C11 H113 sing N N 375 SIA C11 H112 sing N N 376 SIA N5 HN5 sing N N 377 SIA O1B HO1B sing N N 378 SIA O2 HO2 sing N N 379 SIA O4 HO4 sing N N 380 SIA O7 HO7 sing N N 381 SIA O8 HO8 sing N N 382 SIA O9 HO9 sing N N 383 THR N CA sing N N 384 THR N H sing N N 385 THR N H2 sing N N 386 THR CA C sing N N 387 THR CA CB sing N N 388 THR CA HA sing N N 389 THR C O doub N N 390 THR C OXT sing N N 391 THR CB OG1 sing N N 392 THR CB CG2 sing N N 393 THR CB HB sing N N 394 THR OG1 HG1 sing N N 395 THR CG2 HG21 sing N N 396 THR CG2 HG22 sing N N 397 THR CG2 HG23 sing N N 398 THR OXT HXT sing N N 399 TRP N CA sing N N 400 TRP N H sing N N 401 TRP N H2 sing N N 402 TRP CA C sing N N 403 TRP CA CB sing N N 404 TRP CA HA sing N N 405 TRP C O doub N N 406 TRP C OXT sing N N 407 TRP CB CG sing N N 408 TRP CB HB2 sing N N 409 TRP CB HB3 sing N N 410 TRP CG CD1 doub Y N 411 TRP CG CD2 sing Y N 412 TRP CD1 NE1 sing Y N 413 TRP CD1 HD1 sing N N 414 TRP CD2 CE2 doub Y N 415 TRP CD2 CE3 sing Y N 416 TRP NE1 CE2 sing Y N 417 TRP NE1 HE1 sing N N 418 TRP CE2 CZ2 sing Y N 419 TRP CE3 CZ3 doub Y N 420 TRP CE3 HE3 sing N N 421 TRP CZ2 CH2 doub Y N 422 TRP CZ2 HZ2 sing N N 423 TRP CZ3 CH2 sing Y N 424 TRP CZ3 HZ3 sing N N 425 TRP CH2 HH2 sing N N 426 TRP OXT HXT sing N N 427 TYR N CA sing N N 428 TYR N H sing N N 429 TYR N H2 sing N N 430 TYR CA C sing N N 431 TYR CA CB sing N N 432 TYR CA HA sing N N 433 TYR C O doub N N 434 TYR C OXT sing N N 435 TYR CB CG sing N N 436 TYR CB HB2 sing N N 437 TYR CB HB3 sing N N 438 TYR CG CD1 doub Y N 439 TYR CG CD2 sing Y N 440 TYR CD1 CE1 sing Y N 441 TYR CD1 HD1 sing N N 442 TYR CD2 CE2 doub Y N 443 TYR CD2 HD2 sing N N 444 TYR CE1 CZ doub Y N 445 TYR CE1 HE1 sing N N 446 TYR CE2 CZ sing Y N 447 TYR CE2 HE2 sing N N 448 TYR CZ OH sing N N 449 TYR OH HH sing N N 450 TYR OXT HXT sing N N 451 VAL N CA sing N N 452 VAL N H sing N N 453 VAL N H2 sing N N 454 VAL CA C sing N N 455 VAL CA CB sing N N 456 VAL CA HA sing N N 457 VAL C O doub N N 458 VAL C OXT sing N N 459 VAL CB CG1 sing N N 460 VAL CB CG2 sing N N 461 VAL CB HB sing N N 462 VAL CG1 HG11 sing N N 463 VAL CG1 HG12 sing N N 464 VAL CG1 HG13 sing N N 465 VAL CG2 HG21 sing N N 466 VAL CG2 HG22 sing N N 467 VAL CG2 HG23 sing N N 468 VAL OXT HXT sing N N 469 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero E 3 A2G 1 E A2G 1 X NGA 1001 n E 3 GAL 2 E GAL 2 X GAL 1003 n E 3 SIA 3 E SIA 3 X SIA 1002 n F 3 A2G 1 F A2G 1 Y NGA 1001 n F 3 GAL 2 F GAL 2 Y GAL 1003 n F 3 SIA 3 F SIA 3 Y SIA 1002 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A2G 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpNAca A2G 'COMMON NAME' GMML 1.0 N-acetyl-a-D-galactopyranosamine A2G 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GalpNAc A2G 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GalNAc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid' SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'DGalpb1-3[DNeup5Aca2-6]DGalpNAca1-' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_a6-c2' WURCS PDB2Glycan 1.1.0 3 3 '[]{[(3+1)][a-D-GalpNAc]{[(3+1)][b-D-Galp]{}[(6+2)][a-D-Neup5Ac]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 GAL C1 O1 1 A2G O3 HO3 sing ? 2 3 3 SIA C2 O2 1 A2G O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 A2G 1 n 3 GAL 2 n 3 SIA 3 n # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2C6U _pdbx_initial_refinement_model.details 'PDB code 2C6U' #