HEADER OXIDOREDUCTASE 09-APR-14 3WTC TITLE CRYSTAL STRUCTURE OF GOX2036 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLUCONOBACTER OXYDANS; SOURCE 3 ORGANISM_TAXID: 290633; SOURCE 4 STRAIN: 621H; SOURCE 5 GENE: GOX2036; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,J.P.LIN REVDAT 2 08-NOV-23 3WTC 1 SEQADV REVDAT 1 15-APR-15 3WTC 0 JRNL AUTH Y.A.YUAN,J.P.LIN JRNL TITL CRYSTAL STRUCTURE OF GOX0525 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3860 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.29000 REMARK 3 B22 (A**2) : 1.39000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3838 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3816 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5188 ; 2.071 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8770 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 5.953 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;34.793 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;14.549 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.023 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 626 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4358 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 784 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 68.4395 11.5357 24.8552 REMARK 3 T TENSOR REMARK 3 T11: 0.0182 T22: 0.0162 REMARK 3 T33: 0.0036 T12: -0.0043 REMARK 3 T13: -0.0064 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.3332 L22: 0.2597 REMARK 3 L33: 0.2261 L12: 0.2607 REMARK 3 L13: -0.0853 L23: -0.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.0321 S13: 0.0243 REMARK 3 S21: -0.0058 S22: 0.0300 S23: 0.0126 REMARK 3 S31: -0.0380 S32: 0.0103 S33: 0.0108 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 259 REMARK 3 ORIGIN FOR THE GROUP (A): 73.2518 6.0573 54.9207 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0352 REMARK 3 T33: 0.0036 T12: -0.0146 REMARK 3 T13: -0.0032 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.2214 L22: 0.1605 REMARK 3 L33: 0.2579 L12: 0.0313 REMARK 3 L13: 0.0233 L23: 0.0783 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0362 S13: -0.0016 REMARK 3 S21: 0.0018 S22: -0.0435 S23: -0.0198 REMARK 3 S31: -0.0161 S32: 0.0428 S33: 0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000096766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3V2G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, HEPES, PROLINE, PH 7.6, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 58.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.04900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.92000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.04900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.84000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 399 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 197 O HOH B 451 1.35 REMARK 500 CG ASP B 197 O HOH B 451 1.66 REMARK 500 O GLY A 145 CD ARG A 163 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 491 O HOH B 453 3656 1.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 24 CD ARG A 24 NE -0.109 REMARK 500 ARG A 24 CZ ARG A 24 NH2 -0.118 REMARK 500 SER B 71 CB SER B 71 OG -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 CD - NE - CZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 24 NE - CZ - NH1 ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = -19.9 DEGREES REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 121 CG - SD - CE ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 163 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 163 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 163 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 54 CG - CD - NE ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 54 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP B 197 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -168.20 -164.91 REMARK 500 CYS A 141 -148.72 -113.66 REMARK 500 LEU A 151 -0.24 71.43 REMARK 500 VAL A 188 -73.98 -100.26 REMARK 500 ASP B 36 -163.28 -163.71 REMARK 500 VAL B 114 -61.11 -98.34 REMARK 500 CYS B 141 -146.59 -116.88 REMARK 500 LEU B 151 -0.35 74.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 24 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WTB RELATED DB: PDB DBREF 3WTC A 1 259 UNP Q5FPC4 Q5FPC4_GLUOX 1 259 DBREF 3WTC B 1 259 UNP Q5FPC4 Q5FPC4_GLUOX 1 259 SEQADV 3WTC GLY A -2 UNP Q5FPC4 EXPRESSION TAG SEQADV 3WTC SER A -1 UNP Q5FPC4 EXPRESSION TAG SEQADV 3WTC HIS A 0 UNP Q5FPC4 EXPRESSION TAG SEQADV 3WTC GLY B -2 UNP Q5FPC4 EXPRESSION TAG SEQADV 3WTC SER B -1 UNP Q5FPC4 EXPRESSION TAG SEQADV 3WTC HIS B 0 UNP Q5FPC4 EXPRESSION TAG SEQRES 1 A 262 GLY SER HIS MET SER LEU SER GLY LYS ILE ALA ALA VAL SEQRES 2 A 262 THR GLY ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA LEU SEQRES 3 A 262 ARG LEU ALA LYS ASP GLY ALA ASP VAL ILE LEU LEU ASP SEQRES 4 A 262 VAL LYS GLN ASP THR LEU ALA GLU THR ALA LYS GLU VAL SEQRES 5 A 262 GLU ALA LEU GLY ARG ARG ALA VAL ALA LEU THR ALA ASP SEQRES 6 A 262 ILE SER ASN ARG ASP GLN PHE ARG SER THR LEU ALA ASP SEQRES 7 A 262 ALA ALA LYS THR LEU GLY GLY LEU ASP ILE MET VAL ASN SEQRES 8 A 262 ASN ALA GLY ILE CYS GLN VAL LYS PRO ILE LEU ASP ILE SEQRES 9 A 262 GLU PRO ALA GLU ILE GLU LYS ILE PHE SER ILE ASN VAL SEQRES 10 A 262 GLN GLY VAL LEU TRP GLY MET GLN ALA ALA ALA THR LEU SEQRES 11 A 262 PHE LYS GLU LYS GLY THR LYS GLY LYS ILE ILE ASN ALA SEQRES 12 A 262 CYS SER ILE ALA GLY HIS GLU GLY TYR PRO LEU LEU GLY SEQRES 13 A 262 ALA TYR SER ALA THR LYS PHE ALA VAL ARG ALA LEU THR SEQRES 14 A 262 GLN SER ALA ALA LYS GLU LEU ALA SER SER GLY ILE THR SEQRES 15 A 262 VAL ASN SER TYR CYS PRO GLY ILE VAL GLY THR ASP MET SEQRES 16 A 262 TRP VAL THR ILE ASP LYS ARG MET ALA GLU ILE THR GLY SEQRES 17 A 262 THR GLU ILE GLY ALA THR TYR LYS LYS TYR VAL GLU GLY SEQRES 18 A 262 ILE ALA LEU GLY ARG VAL GLU THR ALA ASP ASP VAL ALA SEQRES 19 A 262 GLY PHE VAL ALA TYR LEU SER SER SER ASP ALA ASP TYR SEQRES 20 A 262 MET THR GLY GLN SER VAL LEU ILE ASP GLY GLY LEU VAL SEQRES 21 A 262 PHE ARG SEQRES 1 B 262 GLY SER HIS MET SER LEU SER GLY LYS ILE ALA ALA VAL SEQRES 2 B 262 THR GLY ALA ALA GLN GLY ILE GLY LYS ALA ILE ALA LEU SEQRES 3 B 262 ARG LEU ALA LYS ASP GLY ALA ASP VAL ILE LEU LEU ASP SEQRES 4 B 262 VAL LYS GLN ASP THR LEU ALA GLU THR ALA LYS GLU VAL SEQRES 5 B 262 GLU ALA LEU GLY ARG ARG ALA VAL ALA LEU THR ALA ASP SEQRES 6 B 262 ILE SER ASN ARG ASP GLN PHE ARG SER THR LEU ALA ASP SEQRES 7 B 262 ALA ALA LYS THR LEU GLY GLY LEU ASP ILE MET VAL ASN SEQRES 8 B 262 ASN ALA GLY ILE CYS GLN VAL LYS PRO ILE LEU ASP ILE SEQRES 9 B 262 GLU PRO ALA GLU ILE GLU LYS ILE PHE SER ILE ASN VAL SEQRES 10 B 262 GLN GLY VAL LEU TRP GLY MET GLN ALA ALA ALA THR LEU SEQRES 11 B 262 PHE LYS GLU LYS GLY THR LYS GLY LYS ILE ILE ASN ALA SEQRES 12 B 262 CYS SER ILE ALA GLY HIS GLU GLY TYR PRO LEU LEU GLY SEQRES 13 B 262 ALA TYR SER ALA THR LYS PHE ALA VAL ARG ALA LEU THR SEQRES 14 B 262 GLN SER ALA ALA LYS GLU LEU ALA SER SER GLY ILE THR SEQRES 15 B 262 VAL ASN SER TYR CYS PRO GLY ILE VAL GLY THR ASP MET SEQRES 16 B 262 TRP VAL THR ILE ASP LYS ARG MET ALA GLU ILE THR GLY SEQRES 17 B 262 THR GLU ILE GLY ALA THR TYR LYS LYS TYR VAL GLU GLY SEQRES 18 B 262 ILE ALA LEU GLY ARG VAL GLU THR ALA ASP ASP VAL ALA SEQRES 19 B 262 GLY PHE VAL ALA TYR LEU SER SER SER ASP ALA ASP TYR SEQRES 20 B 262 MET THR GLY GLN SER VAL LEU ILE ASP GLY GLY LEU VAL SEQRES 21 B 262 PHE ARG FORMUL 3 HOH *367(H2 O) HELIX 1 1 GLN A 15 ASP A 28 1 14 HELIX 2 2 LYS A 38 LEU A 52 1 15 HELIX 3 3 ASN A 65 GLY A 81 1 17 HELIX 4 4 PRO A 97 ILE A 101 5 5 HELIX 5 5 GLU A 102 VAL A 114 1 13 HELIX 6 6 VAL A 114 GLY A 132 1 19 HELIX 7 7 SER A 142 HIS A 146 5 5 HELIX 8 8 LEU A 152 ALA A 174 1 23 HELIX 9 9 SER A 175 GLY A 177 5 3 HELIX 10 10 THR A 190 GLY A 205 1 16 HELIX 11 11 GLY A 209 VAL A 216 1 8 HELIX 12 12 THR A 226 SER A 238 1 13 HELIX 13 13 SER A 239 ASP A 243 5 5 HELIX 14 14 GLN B 15 ASP B 28 1 14 HELIX 15 15 LYS B 38 LEU B 52 1 15 HELIX 16 16 ASN B 65 GLY B 81 1 17 HELIX 17 17 PRO B 97 ILE B 101 5 5 HELIX 18 18 GLU B 102 VAL B 114 1 13 HELIX 19 19 VAL B 114 GLY B 132 1 19 HELIX 20 20 SER B 142 HIS B 146 5 5 HELIX 21 21 LEU B 152 ALA B 174 1 23 HELIX 22 22 SER B 175 GLY B 177 5 3 HELIX 23 23 THR B 190 GLY B 205 1 16 HELIX 24 24 GLY B 209 GLY B 218 1 10 HELIX 25 25 THR B 226 SER B 238 1 13 HELIX 26 26 SER B 239 ASP B 243 5 5 SHEET 1 A 7 ALA A 56 THR A 60 0 SHEET 2 A 7 ASP A 31 ASP A 36 1 N LEU A 34 O VAL A 57 SHEET 3 A 7 ILE A 7 THR A 11 1 N ALA A 8 O ASP A 31 SHEET 4 A 7 ILE A 85 ASN A 88 1 O VAL A 87 N ALA A 9 SHEET 5 A 7 LYS A 136 ALA A 140 1 O ILE A 138 N MET A 86 SHEET 6 A 7 THR A 179 PRO A 185 1 O THR A 179 N ILE A 137 SHEET 7 A 7 SER A 249 ILE A 252 1 O VAL A 250 N CYS A 184 SHEET 1 B 7 ALA B 56 THR B 60 0 SHEET 2 B 7 ASP B 31 ASP B 36 1 N LEU B 34 O VAL B 57 SHEET 3 B 7 ILE B 7 THR B 11 1 N ALA B 8 O ILE B 33 SHEET 4 B 7 ILE B 85 ASN B 88 1 O VAL B 87 N ALA B 9 SHEET 5 B 7 LYS B 136 ALA B 140 1 O ILE B 138 N MET B 86 SHEET 6 B 7 THR B 179 PRO B 185 1 O THR B 179 N ILE B 137 SHEET 7 B 7 SER B 249 ILE B 252 1 O VAL B 250 N CYS B 184 CRYST1 117.840 58.098 67.246 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014871 0.00000