HEADER OXYGEN TRANSPORT 11-APR-14 3WTG TITLE CRYSTAL STRUCTURE OF EMU (DROMAIUS NOVAEHOLLANDIAE) HEMOGLOBIN AT 2.3 TITLE 2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA-A; COMPND 3 CHAIN: A, C; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEMOGLOBIN; COMPND 6 CHAIN: B, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROMAIUS NOVAEHOLLANDIAE; SOURCE 3 ORGANISM_COMMON: EMU; SOURCE 4 ORGANISM_TAXID: 8790; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: DROMAIUS NOVAEHOLLANDIAE; SOURCE 7 ORGANISM_COMMON: EMU; SOURCE 8 ORGANISM_TAXID: 8790 KEYWDS HEMOGLOBIN, OXYGEN AFFINITY, AVIAN, OXYGEN TRANSPORT, OXYGEN EXPDTA X-RAY DIFFRACTION AUTHOR M.M.ABUBAKKAR,V.MAHESHWARAN,M.N.PONNUSWAMY,K.SARABOJI REVDAT 2 08-NOV-23 3WTG 1 REMARK LINK REVDAT 1 02-JUL-14 3WTG 0 JRNL AUTH M.M.ABUBAKKAR,K.SARABOJI,M.N.PONNUSWAMY JRNL TITL PURIFICATION AND PRELIMINARY STRUCTURAL STUDIES OF JRNL TITL 2 HEMOGLOBIN FROM HIGH OXYGEN AFFINITY SPECIES EMU (DROMAIUS JRNL TITL 3 NOVAEHOLLANDIAE) AT NEUTRAL PH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23787 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1717 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 180 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : 0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.505 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.275 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4727 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3038 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6472 ; 1.579 ; 2.053 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7430 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 5.726 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;35.810 ;24.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 752 ;17.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 716 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5166 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 902 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 0.789 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 0.188 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4552 ; 1.483 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1894 ; 2.347 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1920 ; 3.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 138 REMARK 3 RESIDUE RANGE : A 201 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6816 6.4500 2.4989 REMARK 3 T TENSOR REMARK 3 T11: 0.0814 T22: 0.0225 REMARK 3 T33: 0.0240 T12: -0.0171 REMARK 3 T13: -0.0295 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.2887 L22: 2.0188 REMARK 3 L33: 1.8311 L12: 0.3389 REMARK 3 L13: -0.1034 L23: 0.1896 REMARK 3 S TENSOR REMARK 3 S11: -0.0723 S12: 0.1013 S13: 0.0574 REMARK 3 S21: -0.2357 S22: 0.0956 S23: 0.0461 REMARK 3 S31: -0.1282 S32: 0.0408 S33: -0.0233 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 RESIDUE RANGE : B 201 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2566 7.0154 26.5259 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.1010 REMARK 3 T33: 0.0227 T12: 0.0007 REMARK 3 T13: -0.0004 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.5524 L22: 1.1985 REMARK 3 L33: 1.5338 L12: 0.0138 REMARK 3 L13: -0.1020 L23: -0.1473 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: -0.4132 S13: 0.0057 REMARK 3 S21: 0.0710 S22: -0.0423 S23: -0.0006 REMARK 3 S31: 0.0017 S32: 0.0134 S33: 0.0921 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 138 REMARK 3 RESIDUE RANGE : C 201 C 202 REMARK 3 ORIGIN FOR THE GROUP (A): -35.0472 -0.4100 10.3389 REMARK 3 T TENSOR REMARK 3 T11: 0.0180 T22: 0.0143 REMARK 3 T33: 0.0705 T12: 0.0066 REMARK 3 T13: -0.0055 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.8393 L22: 2.0096 REMARK 3 L33: 1.8046 L12: 0.6071 REMARK 3 L13: 0.5287 L23: 0.6702 REMARK 3 S TENSOR REMARK 3 S11: 0.0659 S12: -0.1112 S13: 0.2552 REMARK 3 S21: -0.0398 S22: -0.0841 S23: 0.0991 REMARK 3 S31: -0.0715 S32: -0.0823 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 146 REMARK 3 RESIDUE RANGE : D 201 D 202 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0377 -19.1356 14.2114 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0377 REMARK 3 T33: 0.0334 T12: 0.0086 REMARK 3 T13: 0.0012 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.6712 L22: 0.8571 REMARK 3 L33: 1.3141 L12: -0.2111 REMARK 3 L13: -0.4835 L23: -0.1629 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.2300 S13: -0.2118 REMARK 3 S21: 0.0106 S22: -0.0189 S23: -0.0176 REMARK 3 S31: 0.0560 S32: 0.0201 S33: 0.0868 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WTG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000096770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR-H REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25129 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06100 REMARK 200 R SYM FOR SHELL (I) : 0.06100 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.13550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.77950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.77950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.13550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 139 REMARK 465 TYR A 140 REMARK 465 ARG A 141 REMARK 465 MET C 0 REMARK 465 LYS C 139 REMARK 465 TYR C 140 REMARK 465 ARG C 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM D 201 O1 OXY D 202 1.56 REMARK 500 FE HEM A 201 O1 OXY A 202 1.62 REMARK 500 FE HEM C 201 O1 OXY C 202 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 72 48.82 -106.08 REMARK 500 ASP A 75 58.59 -142.60 REMARK 500 LEU A 80 42.35 -98.50 REMARK 500 TYR B 35 77.42 -119.86 REMARK 500 ASN B 77 74.05 -158.24 REMARK 500 ALA B 119 -130.74 51.57 REMARK 500 SER C 115 0.87 83.42 REMARK 500 ASN D 77 59.13 -159.43 REMARK 500 CYS D 93 -74.08 -84.11 REMARK 500 ALA D 119 -134.25 57.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 82 LEU A 83 143.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 95.1 REMARK 620 3 HEM A 201 NB 92.1 89.3 REMARK 620 4 HEM A 201 NC 86.5 177.5 92.6 REMARK 620 5 HEM A 201 ND 89.7 88.7 177.5 89.3 REMARK 620 6 OXY A 202 O2 165.2 98.8 93.1 79.4 85.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 84.0 REMARK 620 3 HEM B 201 NB 86.9 88.1 REMARK 620 4 HEM B 201 NC 95.9 178.0 89.9 REMARK 620 5 HEM B 201 ND 95.3 91.1 177.6 90.9 REMARK 620 6 OXY B 202 O1 166.0 84.6 84.5 95.1 93.1 REMARK 620 7 OXY B 202 O2 166.0 107.9 100.5 72.4 77.5 28.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 85.6 REMARK 620 3 HEM C 201 NB 89.3 87.9 REMARK 620 4 HEM C 201 NC 95.5 178.2 90.6 REMARK 620 5 HEM C 201 ND 91.8 91.6 178.7 89.8 REMARK 620 6 OXY C 202 O2 163.2 110.0 97.1 69.0 82.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 91.5 REMARK 620 3 HEM D 201 NB 95.5 90.3 REMARK 620 4 HEM D 201 NC 89.1 177.2 86.9 REMARK 620 5 HEM D 201 ND 86.9 90.2 177.5 92.6 REMARK 620 6 OXY D 202 O2 171.2 92.6 92.2 87.1 85.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY D 202 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THE CHAINS B AND D DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3WTG A 0 141 UNP C6L8R0 C6L8R0_DRONO 1 142 DBREF 3WTG C 0 141 UNP C6L8R0 C6L8R0_DRONO 1 142 DBREF 3WTG B 1 146 PDB 3WTG 3WTG 1 146 DBREF 3WTG D 1 146 PDB 3WTG 3WTG 1 146 SEQRES 1 A 142 MET VAL LEU SER ALA ALA ASP LYS THR ASN THR LYS SER SEQRES 2 A 142 VAL PHE ALA LYS ILE GLY PRO HIS ALA GLU GLU TYR GLY SEQRES 3 A 142 ALA GLU THR LEU GLU ARG LEU PHE THR THR TYR PRO GLN SEQRES 4 A 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU HIS HIS GLY SEQRES 5 A 142 SER ALA GLN VAL LYS ALA HIS GLY LYS LYS VAL ALA ALA SEQRES 6 A 142 ALA LEU VAL GLU ALA ALA ASN HIS ILE ASP ASP ILE SER SEQRES 7 A 142 THR ALA LEU SER LYS LEU SER ASP LEU HIS ALA GLN LYS SEQRES 8 A 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU GLY GLN SEQRES 9 A 142 CYS PHE LEU VAL VAL VAL ALA ILE HIS HIS PRO SER LEU SEQRES 10 A 142 LEU THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 A 142 CYS ALA VAL ALA ASN VAL LEU THR ALA LYS TYR ARG SEQRES 1 B 146 VAL GLN TRP SER ALA GLU GLU LYS GLN LEU ILE SER SER SEQRES 2 B 146 LEU TRP GLY LYS VAL ASN VAL ALA GLU CYS GLY ALA GLU SEQRES 3 B 146 ALA LEU ALA ARG LEU LEU ILE VAL TYR PRO TRP THR GLN SEQRES 4 B 146 ARG PHE PHE THR SER PHE GLY ASN LEU SER SER ALA SER SEQRES 5 B 146 ALA ILE ILE GLY ASN PRO MET VAL ARG ALA HIS GLY LYS SEQRES 6 B 146 LYS VAL LEU THR SER PHE GLY ASP ALA VAL LYS ASN LEU SEQRES 7 B 146 ASP ASN ILE LYS ASN THR PHE ALA GLN LEU SER GLU LEU SEQRES 8 B 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 B 146 LEU LEU GLY ASP ILE LEU ILE ILE VAL LEU ALA ALA HIS SEQRES 10 B 146 PHE ALA LYS GLU PHE THR PRO GLU CYS GLN ALA ALA TRP SEQRES 11 B 146 GLN LYS LEU VAL ARG VAL VAL ALA HIS ALA LEU ALA ARG SEQRES 12 B 146 LYS TYR HIS SEQRES 1 C 142 MET VAL LEU SER ALA ALA ASP LYS THR ASN THR LYS SER SEQRES 2 C 142 VAL PHE ALA LYS ILE GLY PRO HIS ALA GLU GLU TYR GLY SEQRES 3 C 142 ALA GLU THR LEU GLU ARG LEU PHE THR THR TYR PRO GLN SEQRES 4 C 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU HIS HIS GLY SEQRES 5 C 142 SER ALA GLN VAL LYS ALA HIS GLY LYS LYS VAL ALA ALA SEQRES 6 C 142 ALA LEU VAL GLU ALA ALA ASN HIS ILE ASP ASP ILE SER SEQRES 7 C 142 THR ALA LEU SER LYS LEU SER ASP LEU HIS ALA GLN LYS SEQRES 8 C 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU GLY GLN SEQRES 9 C 142 CYS PHE LEU VAL VAL VAL ALA ILE HIS HIS PRO SER LEU SEQRES 10 C 142 LEU THR PRO GLU VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 C 142 CYS ALA VAL ALA ASN VAL LEU THR ALA LYS TYR ARG SEQRES 1 D 146 VAL GLN TRP SER ALA GLU GLU LYS GLN LEU ILE SER SER SEQRES 2 D 146 LEU TRP GLY LYS VAL ASN VAL ALA GLU CYS GLY ALA GLU SEQRES 3 D 146 ALA LEU ALA ARG LEU LEU ILE VAL TYR PRO TRP THR GLN SEQRES 4 D 146 ARG PHE PHE THR SER PHE GLY ASN LEU SER SER ALA SER SEQRES 5 D 146 ALA ILE ILE GLY ASN PRO MET VAL ARG ALA HIS GLY LYS SEQRES 6 D 146 LYS VAL LEU THR SER PHE GLY ASP ALA VAL LYS ASN LEU SEQRES 7 D 146 ASP ASN ILE LYS ASN THR PHE ALA GLN LEU SER GLU LEU SEQRES 8 D 146 HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE ARG SEQRES 9 D 146 LEU LEU GLY ASP ILE LEU ILE ILE VAL LEU ALA ALA HIS SEQRES 10 D 146 PHE ALA LYS GLU PHE THR PRO GLU CYS GLN ALA ALA TRP SEQRES 11 D 146 GLN LYS LEU VAL ARG VAL VAL ALA HIS ALA LEU ALA ARG SEQRES 12 D 146 LYS TYR HIS HET HEM A 201 43 HET OXY A 202 2 HET HEM B 201 43 HET OXY B 202 2 HET HEM C 201 43 HET OXY C 202 2 HET HEM D 201 43 HET OXY D 202 2 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM OXY OXYGEN MOLECULE HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 OXY 4(O2) FORMUL 13 HOH *360(H2 O) HELIX 1 1 SER A 3 GLY A 18 1 16 HELIX 2 2 HIS A 20 TYR A 36 1 17 HELIX 3 3 PRO A 37 PHE A 43 5 7 HELIX 4 4 SER A 52 HIS A 72 1 21 HELIX 5 5 ASP A 75 LEU A 80 1 6 HELIX 6 6 LEU A 83 GLN A 89 1 7 HELIX 7 7 PRO A 95 HIS A 113 1 19 HELIX 8 8 THR A 118 THR A 137 1 20 HELIX 9 9 SER B 4 GLY B 16 1 13 HELIX 10 10 ASN B 19 TYR B 35 1 17 HELIX 11 11 PRO B 36 GLY B 46 5 11 HELIX 12 12 SER B 50 GLY B 56 1 7 HELIX 13 13 ASN B 57 LYS B 76 1 20 HELIX 14 14 ASN B 77 ASP B 79 5 3 HELIX 15 15 ASN B 80 PHE B 85 1 6 HELIX 16 16 PHE B 85 LYS B 95 1 11 HELIX 17 17 PRO B 100 ALA B 119 1 20 HELIX 18 18 LYS B 120 PHE B 122 5 3 HELIX 19 19 THR B 123 ALA B 142 1 20 HELIX 20 20 ARG B 143 HIS B 146 5 4 HELIX 21 21 SER C 3 GLY C 18 1 16 HELIX 22 22 HIS C 20 TYR C 36 1 17 HELIX 23 23 PRO C 37 PHE C 43 5 7 HELIX 24 24 SER C 52 HIS C 72 1 21 HELIX 25 25 ASP C 75 LEU C 80 1 6 HELIX 26 26 LYS C 82 GLN C 89 1 8 HELIX 27 27 PRO C 95 HIS C 113 1 19 HELIX 28 28 THR C 118 THR C 137 1 20 HELIX 29 29 SER D 4 GLY D 16 1 13 HELIX 30 30 ASN D 19 TYR D 35 1 17 HELIX 31 31 PRO D 36 GLY D 46 5 11 HELIX 32 32 SER D 50 GLY D 56 1 7 HELIX 33 33 ASN D 57 LYS D 76 1 20 HELIX 34 34 ASN D 77 ASP D 79 5 3 HELIX 35 35 ASN D 80 PHE D 85 1 6 HELIX 36 36 PHE D 85 CYS D 93 1 9 HELIX 37 37 PRO D 100 ALA D 119 1 20 HELIX 38 38 LYS D 120 PHE D 122 5 3 HELIX 39 39 THR D 123 ALA D 142 1 20 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 1.96 LINK FE HEM A 201 O2 OXY A 202 1555 1555 2.62 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.08 LINK FE HEM B 201 O1 OXY B 202 1555 1555 1.90 LINK FE HEM B 201 O2 OXY B 202 1555 1555 2.51 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.07 LINK FE HEM C 201 O2 OXY C 202 1555 1555 2.69 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.01 LINK FE HEM D 201 O2 OXY D 202 1555 1555 2.66 SITE 1 AC1 15 TYR A 42 PHE A 43 PHE A 46 HIS A 58 SITE 2 AC1 15 LYS A 61 LEU A 66 LEU A 86 HIS A 87 SITE 3 AC1 15 LEU A 91 VAL A 93 ASN A 97 PHE A 98 SITE 4 AC1 15 LEU A 136 OXY A 202 HOH A 358 SITE 1 AC2 4 HIS A 58 VAL A 62 HIS A 87 HEM A 201 SITE 1 AC3 13 THR B 38 PHE B 41 PHE B 42 HIS B 63 SITE 2 AC3 13 LYS B 66 HIS B 92 LEU B 96 VAL B 98 SITE 3 AC3 13 ASN B 102 PHE B 103 LEU B 141 OXY B 202 SITE 4 AC3 13 HOH B 344 SITE 1 AC4 4 PHE B 42 HIS B 63 VAL B 67 HEM B 201 SITE 1 AC5 15 TYR C 42 PHE C 43 HIS C 45 HIS C 58 SITE 2 AC5 15 LYS C 61 LEU C 83 LEU C 86 HIS C 87 SITE 3 AC5 15 LEU C 91 VAL C 93 ASN C 97 PHE C 98 SITE 4 AC5 15 LEU C 101 LEU C 136 OXY C 202 SITE 1 AC6 4 PHE C 43 HIS C 58 VAL C 62 HEM C 201 SITE 1 AC7 16 LYS C 16 THR D 38 PHE D 41 PHE D 42 SITE 2 AC7 16 HIS D 63 LYS D 66 SER D 70 HIS D 92 SITE 3 AC7 16 LEU D 96 ASN D 102 PHE D 103 LEU D 106 SITE 4 AC7 16 LEU D 141 OXY D 202 HOH D 316 HOH D 368 SITE 1 AC8 4 HIS D 63 VAL D 67 HIS D 92 HEM D 201 CRYST1 66.271 80.010 103.559 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015090 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009656 0.00000