HEADER GENE REGULATION 02-MAY-14 3WUR TITLE STRUCTURE OF DMP19 COMPLEX WITH 18-CROWN-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 GENE: NMB0541; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS HELIX BUNDLE, DNA MIMIC, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR C.C.LEE,H.C.WANG,A.H.J.WANG REVDAT 2 24-AUG-22 3WUR 1 JRNL REMARK SEQADV REVDAT 1 15-OCT-14 3WUR 0 JRNL AUTH C.C.LEE,M.MAESTRE-REYNA,K.C.HSU,H.C.WANG,C.I.LIU,W.Y.JENG, JRNL AUTH 2 L.L.LIN,R.WOOD,C.C.CHOU,J.M.YANG,A.H.WANG JRNL TITL CROWNING PROTEINS: MODULATING THE PROTEIN SURFACE PROPERTIES JRNL TITL 2 USING CROWN ETHERS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 53 13054 2014 JRNL REFN ESSN 1521-3773 JRNL PMID 25287606 JRNL DOI 10.1002/ANIE.201405664 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 67437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3570 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4961 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 234 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 488 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.32000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2787 ; 0.033 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2586 ; 0.007 ; 0.021 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3747 ; 3.025 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6002 ; 2.230 ; 3.044 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 5.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.502 ;25.224 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;11.293 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.939 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.282 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3051 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 1.735 ; 1.606 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1305 ; 1.722 ; 1.603 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1629 ; 2.422 ; 2.403 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1630 ; 2.422 ; 2.407 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1479 ; 3.569 ; 2.016 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1476 ; 3.571 ; 2.015 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2114 ; 5.100 ; 2.885 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3759 ; 7.045 ;16.352 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3758 ; 7.046 ;16.349 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 58.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE, 0.1M REMARK 280 NA CITRATE, 1.6M AMMONIUM SULFATE , PH 5.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.45500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.55000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.22750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.55000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.68250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.55000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.22750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.55000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 132.68250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 88.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 462 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 165 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 445 O HOH A 501 1.82 REMARK 500 O GLU B 142 CD PRO B 146 1.84 REMARK 500 O HOH A 444 O HOH A 445 1.85 REMARK 500 O HOH A 446 O HOH A 447 1.88 REMARK 500 O HOH A 474 O HOH A 498 1.89 REMARK 500 OG SER A 24 O HOH A 407 1.99 REMARK 500 O HOH A 313 O HOH B 466 2.01 REMARK 500 O HOH A 475 O HOH A 499 2.01 REMARK 500 O HOH B 407 O HOH B 490 2.04 REMARK 500 O HOH B 367 O HOH B 441 2.09 REMARK 500 N ALA A 3 O HOH A 395 2.09 REMARK 500 O HOH B 452 O HOH B 532 2.09 REMARK 500 O HOH A 502 O HOH A 506 2.13 REMARK 500 O HOH A 378 O HOH A 510 2.15 REMARK 500 OE1 GLU B 28 O HOH B 528 2.15 REMARK 500 O HOH A 402 O HOH A 539 2.17 REMARK 500 O HOH B 487 O HOH B 539 2.18 REMARK 500 O HOH A 455 O HOH A 495 2.19 REMARK 500 O HOH A 327 O HOH A 485 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 11 NH1 ARG A 11 8554 1.23 REMARK 500 CG ARG A 11 NH1 ARG A 11 8554 1.38 REMARK 500 CD ARG A 11 CZ ARG A 11 8554 1.39 REMARK 500 NE ARG A 11 NE ARG A 11 8554 1.72 REMARK 500 CD ARG A 11 NE ARG A 11 8554 1.79 REMARK 500 CG ARG A 11 CZ ARG A 11 8554 1.99 REMARK 500 O HOH B 414 O HOH B 529 6544 2.00 REMARK 500 CB ARG A 11 NH2 ARG A 11 8554 2.03 REMARK 500 O HOH B 488 O HOH B 529 6544 2.07 REMARK 500 ND1 HIS A 106 CE LYS A 108 7555 2.12 REMARK 500 O HOH A 424 O HOH A 516 7555 2.16 REMARK 500 CD ARG A 11 CD ARG A 11 8554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 11 CZ ARG A 11 NH1 0.082 REMARK 500 SER A 16 CB SER A 16 OG -0.113 REMARK 500 GLU A 36 CB GLU A 36 CG -0.119 REMARK 500 GLU A 60 CD GLU A 60 OE2 0.080 REMARK 500 TYR A 71 CE1 TYR A 71 CZ -0.087 REMARK 500 GLU A 111 CD GLU A 111 OE1 0.066 REMARK 500 GLU A 132 CD GLU A 132 OE1 0.073 REMARK 500 GLU B 104 CD GLU B 104 OE2 -0.068 REMARK 500 ARG B 124 CZ ARG B 124 NH2 -0.089 REMARK 500 GLU B 129 CD GLU B 129 OE1 -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 43 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 71 CB - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 71 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU A 73 OE1 - CD - OE2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ASP A 82 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 97 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 GLU A 104 OE1 - CD - OE2 ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 GLU A 129 OE1 - CD - OE2 ANGL. DEV. = -8.0 DEGREES REMARK 500 GLU A 132 OE1 - CD - OE2 ANGL. DEV. = 7.5 DEGREES REMARK 500 PRO A 146 CA - N - CD ANGL. DEV. = -11.4 DEGREES REMARK 500 ASP B 9 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 PHE B 51 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 PHE B 51 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP B 55 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG B 77 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 77 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 97 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP B 97 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 LYS B 108 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP B 115 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 42.54 -144.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 137 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE O4B B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3VJZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DNA MIMIC PROTEIN DMP19 REMARK 900 RELATED ID: 3WH0 RELATED DB: PDB REMARK 900 RELATED ID: 3WHM RELATED DB: PDB DBREF 3WUR A 1 165 UNP Q9K0P4 Q9K0P4_NEIMB 1 165 DBREF 3WUR B 1 165 UNP Q9K0P4 Q9K0P4_NEIMB 1 165 SEQADV 3WUR HIS A -5 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS A -4 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS A -3 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS A -2 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS A -1 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS A 0 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B -5 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B -4 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B -3 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B -2 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B -1 UNP Q9K0P4 EXPRESSION TAG SEQADV 3WUR HIS B 0 UNP Q9K0P4 EXPRESSION TAG SEQRES 1 A 171 HIS HIS HIS HIS HIS HIS MET THR ALA LEU THR LEU PRO SEQRES 2 A 171 GLU ASP ILE ARG GLN GLN GLU PRO SER ALA LEU LEU TYR SEQRES 3 A 171 THR LEU VAL SER ALA TYR LEU GLU HIS THR ALA GLN THR SEQRES 4 A 171 GLY ASP GLU SER LEU SER CYS LEU SER ASP ASP GLN HIS SEQRES 5 A 171 THR LEU THR ALA PHE CYS TYR LEU ASP SER GLN VAL GLU SEQRES 6 A 171 GLU GLY GLY PHE VAL GLN LEU ILE ALA SER GLY TYR GLY SEQRES 7 A 171 GLU TYR ILE PHE ARG ASN PRO LEU ALA ASP SER LEU ARG SEQRES 8 A 171 ARG TRP LYS ILE LYS ALA VAL PRO LYS VAL LEU ASP LYS SEQRES 9 A 171 ALA LYS ALA LEU TYR GLU GLN HIS GLY LYS THR ILE GLU SEQRES 10 A 171 THR LEU ALA ASP GLY GLY ALA ASP ILE PRO SER LEU ARG SEQRES 11 A 171 LYS GLN PHE PRO GLU PHE GLU GLU TRP ASP GLY ALA TYR SEQRES 12 A 171 TYR GLU ALA ALA GLU GLN ASP LEU PRO LEU LEU ALA GLU SEQRES 13 A 171 HIS ILE GLN SER ASN TRP GLU THR PHE ALA HIS ILE GLY SEQRES 14 A 171 GLN ALA SEQRES 1 B 171 HIS HIS HIS HIS HIS HIS MET THR ALA LEU THR LEU PRO SEQRES 2 B 171 GLU ASP ILE ARG GLN GLN GLU PRO SER ALA LEU LEU TYR SEQRES 3 B 171 THR LEU VAL SER ALA TYR LEU GLU HIS THR ALA GLN THR SEQRES 4 B 171 GLY ASP GLU SER LEU SER CYS LEU SER ASP ASP GLN HIS SEQRES 5 B 171 THR LEU THR ALA PHE CYS TYR LEU ASP SER GLN VAL GLU SEQRES 6 B 171 GLU GLY GLY PHE VAL GLN LEU ILE ALA SER GLY TYR GLY SEQRES 7 B 171 GLU TYR ILE PHE ARG ASN PRO LEU ALA ASP SER LEU ARG SEQRES 8 B 171 ARG TRP LYS ILE LYS ALA VAL PRO LYS VAL LEU ASP LYS SEQRES 9 B 171 ALA LYS ALA LEU TYR GLU GLN HIS GLY LYS THR ILE GLU SEQRES 10 B 171 THR LEU ALA ASP GLY GLY ALA ASP ILE PRO SER LEU ARG SEQRES 11 B 171 LYS GLN PHE PRO GLU PHE GLU GLU TRP ASP GLY ALA TYR SEQRES 12 B 171 TYR GLU ALA ALA GLU GLN ASP LEU PRO LEU LEU ALA GLU SEQRES 13 B 171 HIS ILE GLN SER ASN TRP GLU THR PHE ALA HIS ILE GLY SEQRES 14 B 171 GLN ALA HET O4B A 201 18 HET O4B A 202 18 HET EDO A 203 4 HET SO4 A 204 5 HET O4B B 201 18 HET O4B B 202 18 HET O4B B 203 18 HET O4B B 204 18 HET EDO B 205 4 HET SO4 B 206 5 HET TLA B 207 10 HETNAM O4B 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM TLA L(+)-TARTARIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 O4B 6(C12 H24 O6) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 SO4 2(O4 S 2-) FORMUL 13 TLA C4 H6 O6 FORMUL 14 HOH *488(H2 O) HELIX 1 1 ASP A 9 GLN A 13 5 5 HELIX 2 2 GLU A 14 GLY A 34 1 21 HELIX 3 3 SER A 42 SER A 69 1 28 HELIX 4 4 TYR A 71 PHE A 76 1 6 HELIX 5 5 ARG A 77 TRP A 87 1 11 HELIX 6 6 LYS A 90 GLY A 116 1 27 HELIX 7 7 ASP A 119 PHE A 127 1 9 HELIX 8 8 PHE A 130 SER A 154 1 25 HELIX 9 9 ASN A 155 HIS A 161 1 7 HELIX 10 10 ASP B 9 GLN B 13 5 5 HELIX 11 11 GLU B 14 GLY B 34 1 21 HELIX 12 12 SER B 42 GLY B 70 1 29 HELIX 13 13 TYR B 71 PHE B 76 1 6 HELIX 14 14 ARG B 77 TRP B 87 1 11 HELIX 15 15 LYS B 90 GLY B 116 1 27 HELIX 16 16 ASP B 119 PHE B 127 1 9 HELIX 17 17 PHE B 130 SER B 154 1 25 HELIX 18 18 ASN B 155 ALA B 160 1 6 SITE 1 AC1 8 GLN A 32 GLY A 34 ARG A 124 LYS A 125 SITE 2 AC1 8 GLU A 131 HOH A 411 SER B 24 HOH B 482 SITE 1 AC2 9 ASP A 43 THR A 47 TYR A 74 ARG A 77 SITE 2 AC2 9 PRO A 79 HOH A 468 HOH A 470 ALA B 68 SITE 3 AC2 9 ALA B 114 SITE 1 AC3 7 PHE A 76 ARG A 77 LYS A 100 HOH A 318 SITE 2 AC3 7 GLU B 111 ASP B 115 HOH B 510 SITE 1 AC4 5 ALA A 3 LEU A 4 HIS A 161 ILE A 162 SITE 2 AC4 5 HOH A 371 SITE 1 AC5 9 LEU A 27 TYR A 53 TYR A 74 LEU B 27 SITE 2 AC5 9 TYR B 53 TYR B 71 TYR B 74 HOH B 483 SITE 3 AC5 9 HOH B 484 SITE 1 AC6 10 ALA A 68 ALA A 114 ASP B 43 HIS B 46 SITE 2 AC6 10 THR B 47 TYR B 74 ARG B 77 PRO B 79 SITE 3 AC6 10 HOH B 479 HOH B 525 SITE 1 AC7 11 GLU A 73 TYR A 103 GLY A 107 LYS A 108 SITE 2 AC7 11 GLU A 111 GLU B 73 TYR B 103 LYS B 108 SITE 3 AC7 11 HOH B 478 HOH B 485 HOH B 548 SITE 1 AC8 4 SER A 24 GLY B 34 LYS B 125 GLU B 131 SITE 1 AC9 7 GLU A 111 ASP A 115 PHE B 76 ARG B 77 SITE 2 AC9 7 LYS B 100 HOH B 418 HOH B 425 SITE 1 BC1 10 THR B 2 ALA B 3 LEU B 4 HIS B 161 SITE 2 BC1 10 ILE B 162 TLA B 207 HOH B 365 HOH B 383 SITE 3 BC1 10 HOH B 396 HOH B 397 SITE 1 BC2 17 MET B 1 THR B 2 ALA B 3 LEU B 113 SITE 2 BC2 17 ALA B 118 SER B 122 GLN B 126 SO4 B 206 SITE 3 BC2 17 HOH B 355 HOH B 370 HOH B 397 HOH B 408 SITE 4 BC2 17 HOH B 412 HOH B 413 HOH B 487 HOH B 505 SITE 5 BC2 17 HOH B 549 CRYST1 67.100 67.100 176.910 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005653 0.00000