HEADER MEMBRANE PROTEIN 10-MAY-14 3WV0 TITLE O-GLYCAN ATTACHED TO HERPES SIMPLEX VIRUS TYPE 1 GLYCOPROTEIN GB IS TITLE 2 RECOGNIZED BY THE IG V-SET DOMAIN OF HUMAN PAIRED IMMUNOGLOBULIN-LIKE TITLE 3 TYPE 2 RECEPTOR ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: V-SET DOMAIN, UNP RESIDUES 32-150; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ENVELOPE GLYCOPROTEIN B; COMPND 9 CHAIN: X, Y; COMPND 10 FRAGMENT: O-GLYCAN WITH ATTACHED PEPTIDE, UNP RESIDUES 50-56; COMPND 11 SYNONYM: GB, GB-1, GB1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PILRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 14 ORGANISM_COMMON: HHV-1; SOURCE 15 ORGANISM_TAXID: 10306; SOURCE 16 OTHER_DETAILS: O-GLYCAN WITH PEPTIDE DERIVED FROM HUMAN HERPESVIRUS SOURCE 17 1 KEYWDS IMMUNOGLOBULIN-LIKE, IMMUNOLOGICAL RECEPTOR, MEMBRANE, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KUROKI,J.WANG,T.OSE,M.YAMAGUCHI,S.TABATA,N.MAITA,S.NAKAMURA, AUTHOR 2 M.KAJIKAWA,A.KOGURE,T.SATOH,H.ARASE,K.MAENAKA REVDAT 5 08-NOV-23 3WV0 1 HETSYN REVDAT 4 29-JUL-20 3WV0 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 22-NOV-17 3WV0 1 REMARK REVDAT 2 17-DEC-14 3WV0 1 JRNL REVDAT 1 11-JUN-14 3WV0 0 JRNL AUTH K.KUROKI,J.WANG,T.OSE,M.YAMAGUCHI,S.TABATA,N.MAITA, JRNL AUTH 2 S.NAKAMURA,M.KAJIKAWA,A.KOGURE,T.SATOH,H.ARASE,K.MAENAKA JRNL TITL STRUCTURAL BASIS FOR SIMULTANEOUS RECOGNITION OF AN O-GLYCAN JRNL TITL 2 AND ITS ATTACHED PEPTIDE OF MUCIN FAMILY BY IMMUNE RECEPTOR JRNL TITL 3 PILR ALPHA JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 8877 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24889612 JRNL DOI 10.1073/PNAS.1324105111 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 584 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2796 REMARK 3 BIN FREE R VALUE : 0.4315 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 59 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2042 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53400 REMARK 3 B22 (A**2) : -6.26100 REMARK 3 B33 (A**2) : 7.79500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.850 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.16800 REMARK 200 R SYM (I) : 0.15600 REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : 0.51200 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3WUZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE 30% PEG 8000, REMARK 280 PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.67700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.67700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.15650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.94350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.15650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.94350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.67700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.15650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.94350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.67700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.15650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.94350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Y, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 150 REMARK 465 THR B 150 REMARK 465 GLY Y 50 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 89 124.72 -178.33 REMARK 500 ASN A 95 -2.41 70.54 REMARK 500 TRP A 101 149.88 -176.39 REMARK 500 SER A 121 -179.10 179.34 REMARK 500 PRO B 87 64.74 -61.80 REMARK 500 ARG B 96 37.38 -143.82 REMARK 500 GLU B 103 138.77 -37.49 REMARK 500 ASN B 114 58.15 39.53 REMARK 500 SER B 121 -164.53 -161.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WUZ RELATED DB: PDB REMARK 900 THE SAME PROTEIN FREE FORM DBREF 3WV0 A 32 150 UNP C9JGG1 C9JGG1_HUMAN 32 150 DBREF 3WV0 B 32 150 UNP C9JGG1 C9JGG1_HUMAN 32 150 DBREF 3WV0 X 50 56 UNP P06437 GB_HHV1K 50 56 DBREF 3WV0 Y 50 56 UNP P06437 GB_HHV1K 50 56 SEQADV 3WV0 MET A 31 UNP C9JGG1 EXPRESSION TAG SEQADV 3WV0 GLY A 78 UNP C9JGG1 ARG 78 ENGINEERED MUTATION SEQADV 3WV0 MET B 31 UNP C9JGG1 EXPRESSION TAG SEQADV 3WV0 GLY B 78 UNP C9JGG1 ARG 78 ENGINEERED MUTATION SEQRES 1 A 120 MET LEU TYR GLY VAL THR GLN PRO LYS HIS LEU SER ALA SEQRES 2 A 120 SER MET GLY GLY SER VAL GLU ILE PRO PHE SER PHE TYR SEQRES 3 A 120 TYR PRO TRP GLU LEU ALA THR ALA PRO ASP VAL ARG ILE SEQRES 4 A 120 SER TRP ARG ARG GLY HIS PHE HIS GLY GLN SER PHE TYR SEQRES 5 A 120 SER THR ARG PRO PRO SER ILE HIS LYS ASP TYR VAL ASN SEQRES 6 A 120 ARG LEU PHE LEU ASN TRP THR GLU GLY GLN LYS SER GLY SEQRES 7 A 120 PHE LEU ARG ILE SER ASN LEU GLN LYS GLN ASP GLN SER SEQRES 8 A 120 VAL TYR PHE CYS ARG VAL GLU LEU ASP THR ARG SER SER SEQRES 9 A 120 GLY ARG GLN GLN TRP GLN SER ILE GLU GLY THR LYS LEU SEQRES 10 A 120 SER ILE THR SEQRES 1 B 120 MET LEU TYR GLY VAL THR GLN PRO LYS HIS LEU SER ALA SEQRES 2 B 120 SER MET GLY GLY SER VAL GLU ILE PRO PHE SER PHE TYR SEQRES 3 B 120 TYR PRO TRP GLU LEU ALA THR ALA PRO ASP VAL ARG ILE SEQRES 4 B 120 SER TRP ARG ARG GLY HIS PHE HIS GLY GLN SER PHE TYR SEQRES 5 B 120 SER THR ARG PRO PRO SER ILE HIS LYS ASP TYR VAL ASN SEQRES 6 B 120 ARG LEU PHE LEU ASN TRP THR GLU GLY GLN LYS SER GLY SEQRES 7 B 120 PHE LEU ARG ILE SER ASN LEU GLN LYS GLN ASP GLN SER SEQRES 8 B 120 VAL TYR PHE CYS ARG VAL GLU LEU ASP THR ARG SER SER SEQRES 9 B 120 GLY ARG GLN GLN TRP GLN SER ILE GLU GLY THR LYS LEU SEQRES 10 B 120 SER ILE THR SEQRES 1 X 7 GLY PRO ALA THR PRO ALA PRO SEQRES 1 Y 7 GLY PRO ALA THR PRO ALA PRO MODRES 3WV0 THR Y 53 THR GLYCOSYLATION SITE MODRES 3WV0 THR X 53 THR GLYCOSYLATION SITE HET A2G C 1 14 HET SIA C 2 20 HET A2G D 1 14 HET SIA D 2 20 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM SO4 SULFATE ION HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 5 A2G 2(C8 H15 N O6) FORMUL 5 SIA 2(C11 H19 N O9) FORMUL 7 SO4 8(O4 S 2-) FORMUL 15 HOH *162(H2 O) HELIX 1 1 GLN A 116 GLN A 120 5 5 HELIX 2 2 GLN B 116 GLN B 120 5 5 SHEET 1 A 4 GLY A 34 THR A 36 0 SHEET 2 A 4 VAL A 49 TYR A 56 -1 O SER A 54 N THR A 36 SHEET 3 A 4 SER A 107 ILE A 112 -1 O LEU A 110 N ILE A 51 SHEET 4 A 4 LEU A 97 ASN A 100 -1 N ASN A 100 O PHE A 109 SHEET 1 B 6 HIS A 40 SER A 42 0 SHEET 2 B 6 THR A 145 SER A 148 1 O LYS A 146 N LEU A 41 SHEET 3 B 6 SER A 121 ASP A 130 -1 N TYR A 123 O THR A 145 SHEET 4 B 6 ARG A 68 ARG A 73 -1 N ARG A 72 O PHE A 124 SHEET 5 B 6 TYR A 82 SER A 83 -1 O TYR A 82 N TRP A 71 SHEET 6 B 6 SER A 88 ILE A 89 -1 O SER A 88 N SER A 83 SHEET 1 C 4 HIS A 40 SER A 42 0 SHEET 2 C 4 THR A 145 SER A 148 1 O LYS A 146 N LEU A 41 SHEET 3 C 4 SER A 121 ASP A 130 -1 N TYR A 123 O THR A 145 SHEET 4 C 4 ARG A 136 GLN A 140 -1 O TRP A 139 N VAL A 127 SHEET 1 D 4 GLY B 34 THR B 36 0 SHEET 2 D 4 VAL B 49 TYR B 56 -1 O SER B 54 N THR B 36 SHEET 3 D 4 SER B 107 ILE B 112 -1 O LEU B 110 N ILE B 51 SHEET 4 D 4 LEU B 97 ASN B 100 -1 N PHE B 98 O ARG B 111 SHEET 1 E 5 HIS B 40 SER B 42 0 SHEET 2 E 5 THR B 145 SER B 148 1 O LYS B 146 N LEU B 41 SHEET 3 E 5 VAL B 122 ASP B 130 -1 N TYR B 123 O THR B 145 SHEET 4 E 5 ARG B 68 ARG B 73 -1 N ARG B 72 O PHE B 124 SHEET 5 E 5 TYR B 82 SER B 83 -1 O TYR B 82 N TRP B 71 SHEET 1 F 4 HIS B 40 SER B 42 0 SHEET 2 F 4 THR B 145 SER B 148 1 O LYS B 146 N LEU B 41 SHEET 3 F 4 VAL B 122 ASP B 130 -1 N TYR B 123 O THR B 145 SHEET 4 F 4 ARG B 136 GLN B 140 -1 O TRP B 139 N VAL B 127 LINK OG1 THR X 53 C1 A2G C 1 1555 1555 1.39 LINK OG1 THR Y 53 C1 A2G D 1 1555 1555 1.39 LINK O6 A2G C 1 C2 SIA C 2 1555 1555 1.39 LINK O6 A2G D 1 C2 SIA D 2 1555 1555 1.39 CISPEP 1 ARG A 85 PRO A 86 0 -0.46 CISPEP 2 ARG B 85 PRO B 86 0 -0.51 CRYST1 50.313 155.887 67.354 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014847 0.00000