HEADER TRANSFERASE 16-MAY-14 3WV7 TITLE HCGE FROM METHANOTHERMOBACTER MARBURGENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HMD CO-OCCURRING PROTEIN HCGE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.7.7.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER MARBURGENSIS; SOURCE 3 ORGANISM_TAXID: 79929; SOURCE 4 STRAIN: DSM 2133 / 14651 / NBRC 100331 / OCM 82 / MARBURG; SOURCE 5 GENE: HCGE, MTBMA_C15310; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS E1 ENZYME SUPERFAMILY, UBA/THIF-TYPE NAD/FAD BINDING FOLD, KEYWDS 2 ADENYLYLTRANSFERASE, ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,U.ERMLER,S.SHIMA REVDAT 2 08-NOV-23 3WV7 1 REMARK SEQADV REVDAT 1 29-APR-15 3WV7 0 JRNL AUTH T.FUJISHIRO,J.KAHNT,U.ERMLER,S.SHIMA JRNL TITL PROTEIN-PYRIDINOL THIOESTER PRECURSOR FOR BIOSYNTHESIS OF JRNL TITL 2 THE ORGANOMETALLIC ACYL-IRON LIGAND IN [FE]-HYDROGENASE JRNL TITL 3 COFACTOR JRNL REF NAT COMMUN V. 6 6895 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25882909 JRNL DOI 10.1038/NCOMMS7895 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 78334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3936 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 274 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.349 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4670 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 2.308 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.815 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.239 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 807 ;13.554 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;20.729 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3464 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2409 ; 2.161 ; 1.710 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3006 ; 3.092 ; 2.553 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2261 ; 3.817 ; 2.132 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 10 210 B 10 210 239 0.110 0.050 REMARK 3 2 A 10 210 C 10 210 241 0.090 0.050 REMARK 3 3 B 10 210 C 10 210 240 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4430 32.1672 46.8058 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0310 REMARK 3 T33: 0.0451 T12: 0.0281 REMARK 3 T13: -0.0089 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.7517 L22: 0.9033 REMARK 3 L33: 1.0975 L12: 0.3559 REMARK 3 L13: -0.0403 L23: 0.0451 REMARK 3 S TENSOR REMARK 3 S11: -0.0177 S12: 0.0102 S13: -0.1959 REMARK 3 S21: -0.0685 S22: -0.0414 S23: 0.0109 REMARK 3 S31: 0.1458 S32: 0.1274 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 50.3192 48.1051 49.7878 REMARK 3 T TENSOR REMARK 3 T11: 0.0330 T22: 0.0121 REMARK 3 T33: 0.0617 T12: 0.0073 REMARK 3 T13: -0.0291 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.2230 L22: 0.7488 REMARK 3 L33: 1.2259 L12: 0.3523 REMARK 3 L13: -0.1190 L23: 0.3665 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: -0.0316 S13: 0.1347 REMARK 3 S21: -0.0308 S22: -0.0196 S23: 0.1376 REMARK 3 S31: -0.0921 S32: -0.0194 S33: 0.0647 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 31.6316 25.0367 26.2721 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0547 REMARK 3 T33: 0.0207 T12: -0.0373 REMARK 3 T13: -0.0257 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.7309 L22: 0.8439 REMARK 3 L33: 1.6541 L12: -0.0411 REMARK 3 L13: 0.5322 L23: 0.1547 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: 0.0453 S13: -0.0586 REMARK 3 S21: 0.0600 S22: 0.0091 S23: 0.0098 REMARK 3 S31: 0.3734 S32: -0.0824 S33: -0.0822 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 114 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3770 41.0953 20.1499 REMARK 3 T TENSOR REMARK 3 T11: 0.0473 T22: 0.0630 REMARK 3 T33: 0.0188 T12: -0.0086 REMARK 3 T13: -0.0222 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.5869 L22: 0.5326 REMARK 3 L33: 2.5974 L12: -0.0566 REMARK 3 L13: -0.0210 L23: -0.4992 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.0343 S13: 0.0401 REMARK 3 S21: 0.0396 S22: -0.0182 S23: -0.0297 REMARK 3 S31: -0.1277 S32: -0.0747 S33: 0.0471 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 99 REMARK 3 ORIGIN FOR THE GROUP (A): 26.5021 27.9202 56.1547 REMARK 3 T TENSOR REMARK 3 T11: 0.0382 T22: 0.0139 REMARK 3 T33: 0.0535 T12: -0.0017 REMARK 3 T13: 0.0014 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.4414 L22: 1.0308 REMARK 3 L33: 1.1027 L12: 0.0463 REMARK 3 L13: -0.3028 L23: -0.2198 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: -0.0076 S13: -0.1849 REMARK 3 S21: -0.0241 S22: 0.0044 S23: -0.0813 REMARK 3 S31: 0.1412 S32: 0.0572 S33: 0.0827 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 100 C 210 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3755 43.3102 51.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.0721 REMARK 3 T33: 0.0218 T12: -0.0007 REMARK 3 T13: -0.0107 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.7350 L22: 0.3186 REMARK 3 L33: 0.7391 L12: -0.2370 REMARK 3 L13: -0.6262 L23: 0.0693 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: 0.1761 S13: 0.0767 REMARK 3 S21: -0.0299 S22: -0.0128 S23: -0.0305 REMARK 3 S31: -0.0359 S32: -0.1394 S33: -0.0382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3WV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111)DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.350 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ZUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15%(W/V) PEG6000, 0.1M SODIUM CITRATE, REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.76000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 GLY A 8 REMARK 465 LYS A 9 REMARK 465 GLN A 211 REMARK 465 ARG A 212 REMARK 465 LEU A 213 REMARK 465 GLU A 214 REMARK 465 LEU A 215 REMARK 465 VAL A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ILE B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 LEU B 6 REMARK 465 GLU B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 211 REMARK 465 ARG B 212 REMARK 465 LEU B 213 REMARK 465 GLU B 214 REMARK 465 LEU B 215 REMARK 465 VAL B 216 REMARK 465 PRO B 217 REMARK 465 ARG B 218 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 ILE C 3 REMARK 465 SER C 4 REMARK 465 GLU C 5 REMARK 465 LEU C 6 REMARK 465 GLU C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 GLN C 211 REMARK 465 ARG C 212 REMARK 465 LEU C 213 REMARK 465 GLU C 214 REMARK 465 LEU C 215 REMARK 465 VAL C 216 REMARK 465 PRO C 217 REMARK 465 ARG C 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR C 124 CE1 TYR C 124 CZ -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 59 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 27 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 59 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 59 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG C 27 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 TYR C 124 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR C 124 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 77 67.56 -100.89 REMARK 500 CYS C 78 -173.95 -63.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WV8 RELATED DB: PDB REMARK 900 RELATED ID: 3WV9 RELATED DB: PDB REMARK 900 RELATED ID: 3WVA RELATED DB: PDB REMARK 900 RELATED ID: 3WVB RELATED DB: PDB REMARK 900 RELATED ID: 3WVC RELATED DB: PDB DBREF 3WV7 A 1 212 UNP D9PY12 D9PY12_METTM 1 212 DBREF 3WV7 B 1 212 UNP D9PY12 D9PY12_METTM 1 212 DBREF 3WV7 C 1 212 UNP D9PY12 D9PY12_METTM 1 212 SEQADV 3WV7 LEU A 213 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 GLU A 214 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 LEU A 215 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 VAL A 216 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 PRO A 217 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 ARG A 218 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 LEU B 213 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 GLU B 214 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 LEU B 215 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 VAL B 216 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 PRO B 217 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 ARG B 218 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 LEU C 213 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 GLU C 214 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 LEU C 215 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 VAL C 216 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 PRO C 217 UNP D9PY12 EXPRESSION TAG SEQADV 3WV7 ARG C 218 UNP D9PY12 EXPRESSION TAG SEQRES 1 A 218 MET GLU ILE SER GLU LEU GLU GLY LYS LYS VAL PRO HIS SEQRES 2 A 218 GLY GLU VAL THR LEU VAL GLY ALA GLY ARG LEU GLY PHE SEQRES 3 A 218 ARG THR ALA LEU ASN LEU MET GLN ILE HIS ARG GLY GLY SEQRES 4 A 218 PRO GLU ARG ILE LYS VAL ILE ASP GLY GLN LYS VAL SER SEQRES 5 A 218 ALA ASP ASP LEU ILE PHE ARG LEU MET GLY ALA LYS ILE SEQRES 6 A 218 GLY GLU TYR LYS VAL LYS PHE ILE GLU SER LEU ALA CYS SEQRES 7 A 218 ASP GLY PHE SER ARG THR VAL GLN GLY ILE PRO GLU TYR SEQRES 8 A 218 ILE THR GLY ASP ASN LEU ARG LEU ILE GLY GLY ASP VAL SEQRES 9 A 218 VAL CYS VAL GLU ILE ALA GLY GLY ASP THR LEU PRO ILE SEQRES 10 A 218 THR THR GLU ILE ILE ARG TYR ALA GLN GLU ARG GLY ALA SEQRES 11 A 218 ALA THR ILE SER THR MET GLY VAL PHE GLY ILE GLY GLU SEQRES 12 A 218 GLU ASP VAL SER VAL VAL ASP ILE ASP GLU ALA ASP PRO SEQRES 13 A 218 GLU ASN PRO ILE ALA ALA TYR LEU GLN ALA GLU GLY ILE SEQRES 14 A 218 HIS GLU HIS VAL LEU VAL GLY THR GLY LYS LEU ILE ARG SEQRES 15 A 218 ASP TRP GLU PRO VAL THR PRO HIS VAL LEU ASP ARG VAL SEQRES 16 A 218 SER GLU VAL MET THR ALA GLU ILE LEU LYS LEU LEU ARG SEQRES 17 A 218 GLY ALA GLN ARG LEU GLU LEU VAL PRO ARG SEQRES 1 B 218 MET GLU ILE SER GLU LEU GLU GLY LYS LYS VAL PRO HIS SEQRES 2 B 218 GLY GLU VAL THR LEU VAL GLY ALA GLY ARG LEU GLY PHE SEQRES 3 B 218 ARG THR ALA LEU ASN LEU MET GLN ILE HIS ARG GLY GLY SEQRES 4 B 218 PRO GLU ARG ILE LYS VAL ILE ASP GLY GLN LYS VAL SER SEQRES 5 B 218 ALA ASP ASP LEU ILE PHE ARG LEU MET GLY ALA LYS ILE SEQRES 6 B 218 GLY GLU TYR LYS VAL LYS PHE ILE GLU SER LEU ALA CYS SEQRES 7 B 218 ASP GLY PHE SER ARG THR VAL GLN GLY ILE PRO GLU TYR SEQRES 8 B 218 ILE THR GLY ASP ASN LEU ARG LEU ILE GLY GLY ASP VAL SEQRES 9 B 218 VAL CYS VAL GLU ILE ALA GLY GLY ASP THR LEU PRO ILE SEQRES 10 B 218 THR THR GLU ILE ILE ARG TYR ALA GLN GLU ARG GLY ALA SEQRES 11 B 218 ALA THR ILE SER THR MET GLY VAL PHE GLY ILE GLY GLU SEQRES 12 B 218 GLU ASP VAL SER VAL VAL ASP ILE ASP GLU ALA ASP PRO SEQRES 13 B 218 GLU ASN PRO ILE ALA ALA TYR LEU GLN ALA GLU GLY ILE SEQRES 14 B 218 HIS GLU HIS VAL LEU VAL GLY THR GLY LYS LEU ILE ARG SEQRES 15 B 218 ASP TRP GLU PRO VAL THR PRO HIS VAL LEU ASP ARG VAL SEQRES 16 B 218 SER GLU VAL MET THR ALA GLU ILE LEU LYS LEU LEU ARG SEQRES 17 B 218 GLY ALA GLN ARG LEU GLU LEU VAL PRO ARG SEQRES 1 C 218 MET GLU ILE SER GLU LEU GLU GLY LYS LYS VAL PRO HIS SEQRES 2 C 218 GLY GLU VAL THR LEU VAL GLY ALA GLY ARG LEU GLY PHE SEQRES 3 C 218 ARG THR ALA LEU ASN LEU MET GLN ILE HIS ARG GLY GLY SEQRES 4 C 218 PRO GLU ARG ILE LYS VAL ILE ASP GLY GLN LYS VAL SER SEQRES 5 C 218 ALA ASP ASP LEU ILE PHE ARG LEU MET GLY ALA LYS ILE SEQRES 6 C 218 GLY GLU TYR LYS VAL LYS PHE ILE GLU SER LEU ALA CYS SEQRES 7 C 218 ASP GLY PHE SER ARG THR VAL GLN GLY ILE PRO GLU TYR SEQRES 8 C 218 ILE THR GLY ASP ASN LEU ARG LEU ILE GLY GLY ASP VAL SEQRES 9 C 218 VAL CYS VAL GLU ILE ALA GLY GLY ASP THR LEU PRO ILE SEQRES 10 C 218 THR THR GLU ILE ILE ARG TYR ALA GLN GLU ARG GLY ALA SEQRES 11 C 218 ALA THR ILE SER THR MET GLY VAL PHE GLY ILE GLY GLU SEQRES 12 C 218 GLU ASP VAL SER VAL VAL ASP ILE ASP GLU ALA ASP PRO SEQRES 13 C 218 GLU ASN PRO ILE ALA ALA TYR LEU GLN ALA GLU GLY ILE SEQRES 14 C 218 HIS GLU HIS VAL LEU VAL GLY THR GLY LYS LEU ILE ARG SEQRES 15 C 218 ASP TRP GLU PRO VAL THR PRO HIS VAL LEU ASP ARG VAL SEQRES 16 C 218 SER GLU VAL MET THR ALA GLU ILE LEU LYS LEU LEU ARG SEQRES 17 C 218 GLY ALA GLN ARG LEU GLU LEU VAL PRO ARG HET ADP A 301 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 HOH *366(H2 O) HELIX 1 1 GLY A 22 GLN A 34 1 13 HELIX 2 2 ASP A 55 MET A 61 1 7 HELIX 3 3 TYR A 68 LEU A 76 1 9 HELIX 4 4 THR A 93 ILE A 100 5 8 HELIX 5 5 THR A 114 ARG A 128 1 15 HELIX 6 6 ASP A 152 ALA A 154 5 3 HELIX 7 7 ASN A 158 GLU A 167 1 10 HELIX 8 8 THR A 188 ALA A 210 1 23 HELIX 9 9 GLY B 22 GLN B 34 1 13 HELIX 10 10 ASP B 55 MET B 61 1 7 HELIX 11 11 TYR B 68 LEU B 76 1 9 HELIX 12 12 ASN B 96 ILE B 100 5 5 HELIX 13 13 THR B 114 ARG B 128 1 15 HELIX 14 14 ASP B 152 ALA B 154 5 3 HELIX 15 15 ASN B 158 GLU B 167 1 10 HELIX 16 16 THR B 188 GLY B 209 1 22 HELIX 17 17 GLY C 22 GLN C 34 1 13 HELIX 18 18 ASP C 55 MET C 61 1 7 HELIX 19 19 TYR C 68 ALA C 77 1 10 HELIX 20 20 THR C 93 ILE C 100 5 8 HELIX 21 21 THR C 114 ARG C 128 1 15 HELIX 22 22 ASP C 152 ALA C 154 5 3 HELIX 23 23 ASN C 158 GLU C 167 1 10 HELIX 24 24 THR C 188 ARG C 208 1 21 SHEET 1 A 7 THR A 84 ILE A 88 0 SHEET 2 A 7 ARG A 42 ILE A 46 1 N VAL A 45 O ILE A 88 SHEET 3 A 7 GLU A 15 VAL A 19 1 N LEU A 18 O LYS A 44 SHEET 4 A 7 VAL A 104 VAL A 107 1 O VAL A 104 N THR A 17 SHEET 5 A 7 ALA A 131 THR A 135 1 O ALA A 131 N VAL A 105 SHEET 6 A 7 HIS A 172 GLY A 176 1 O VAL A 173 N THR A 132 SHEET 7 A 7 SER A 147 ASP A 150 -1 N VAL A 149 O LEU A 174 SHEET 1 B 7 THR B 84 ILE B 88 0 SHEET 2 B 7 ARG B 42 ILE B 46 1 N VAL B 45 O ILE B 88 SHEET 3 B 7 GLU B 15 VAL B 19 1 N LEU B 18 O LYS B 44 SHEET 4 B 7 VAL B 104 VAL B 107 1 O CYS B 106 N VAL B 19 SHEET 5 B 7 ALA B 131 THR B 135 1 O ALA B 131 N VAL B 105 SHEET 6 B 7 HIS B 172 GLY B 176 1 O VAL B 173 N THR B 132 SHEET 7 B 7 SER B 147 ASP B 150 -1 N VAL B 149 O LEU B 174 SHEET 1 C 7 THR C 84 ILE C 88 0 SHEET 2 C 7 ARG C 42 ILE C 46 1 N VAL C 45 O ILE C 88 SHEET 3 C 7 GLU C 15 VAL C 19 1 N LEU C 18 O LYS C 44 SHEET 4 C 7 VAL C 104 VAL C 107 1 O CYS C 106 N THR C 17 SHEET 5 C 7 ALA C 131 THR C 135 1 O ALA C 131 N VAL C 105 SHEET 6 C 7 VAL C 173 GLY C 176 1 O VAL C 173 N SER C 134 SHEET 7 C 7 SER C 147 ASP C 150 -1 N VAL C 149 O LEU C 174 SITE 1 AC1 17 GLY A 22 ARG A 23 LEU A 24 ILE A 46 SITE 2 AC1 17 ASP A 47 GLN A 49 LYS A 69 TYR A 91 SITE 3 AC1 17 ILE A 92 ILE A 109 ALA A 110 LEU A 192 SITE 4 AC1 17 HOH A 405 HOH A 409 HOH A 474 HIS C 36 SITE 5 AC1 17 HOH C 407 CRYST1 68.390 73.520 68.580 90.00 118.05 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014622 0.000000 0.007790 0.00000 SCALE2 0.000000 0.013602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016522 0.00000