HEADER HYDROLASE 16-MAY-14 3WVB TITLE HCGF FROM METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0254 PROTEIN MJ1251; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.2.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 243232; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: MJ1251; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS THIOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,U.ERMLER,S.SHIMA REVDAT 3 08-NOV-23 3WVB 1 REMARK REVDAT 2 25-DEC-19 3WVB 1 SEQADV REVDAT 1 29-APR-15 3WVB 0 JRNL AUTH T.FUJISHIRO,J.KAHNT,U.ERMLER,S.SHIMA JRNL TITL PROTEIN-PYRIDINOL THIOESTER PRECURSOR FOR BIOSYNTHESIS OF JRNL TITL 2 THE ORGANOMETALLIC ACYL-IRON LIGAND IN [FE]-HYDROGENASE JRNL TITL 3 COFACTOR JRNL REF NAT COMMUN V. 6 6895 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25882909 JRNL DOI 10.1038/NCOMMS7895 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 31563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2196 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.1370 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.1750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.579 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2726 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3666 ; 2.286 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 5.936 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;40.798 ;24.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 531 ;14.922 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.353 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 415 ; 0.190 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1990 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1340 ; 0.926 ; 0.807 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1673 ; 1.357 ; 1.210 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1386 ; 2.363 ; 1.127 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 167 B 1 167 219 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 52 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7572 -0.1173 11.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0135 REMARK 3 T33: 0.0163 T12: -0.0024 REMARK 3 T13: 0.0024 T23: 0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.3234 L22: 0.5236 REMARK 3 L33: 1.0140 L12: -0.1521 REMARK 3 L13: -0.2329 L23: -0.0730 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.1134 S13: 0.0393 REMARK 3 S21: -0.0148 S22: -0.0149 S23: 0.0062 REMARK 3 S31: -0.0452 S32: 0.0384 S33: -0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9352 -0.1058 21.5943 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0076 REMARK 3 T33: 0.0020 T12: 0.0038 REMARK 3 T13: 0.0034 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.0673 L22: 0.4321 REMARK 3 L33: 0.3795 L12: -0.1868 REMARK 3 L13: 0.1483 L23: 0.2333 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0520 S13: -0.0004 REMARK 3 S21: 0.0231 S22: 0.0034 S23: 0.0243 REMARK 3 S31: 0.0157 S32: -0.0050 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8352 -7.3449 3.2485 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: 0.0128 REMARK 3 T33: 0.0269 T12: -0.0007 REMARK 3 T13: -0.0027 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.7967 L22: 0.8413 REMARK 3 L33: 0.6969 L12: -0.3063 REMARK 3 L13: -0.4066 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.1106 S13: 0.1262 REMARK 3 S21: -0.0661 S22: -0.0395 S23: 0.0368 REMARK 3 S31: -0.0631 S32: -0.0394 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1307 -17.7538 2.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.0304 T22: 0.0084 REMARK 3 T33: 0.0190 T12: -0.0076 REMARK 3 T13: 0.0101 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.7425 L22: 0.2767 REMARK 3 L33: 0.4176 L12: 0.0181 REMARK 3 L13: -0.1145 L23: 0.2467 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.0745 S13: -0.0522 REMARK 3 S21: 0.0075 S22: 0.0062 S23: 0.0122 REMARK 3 S31: 0.0073 S32: -0.0122 S33: 0.0274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3WVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000096837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.270 REMARK 200 MONOCHROMATOR : A SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31585 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.620 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.04200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 25.62 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEMET-LABELLED HCGF PDB ENTRY 3WVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%(W/V)PEG3000, 200MM SODIUM REMARK 280 CHLORIDE, 100MM HEPES-NAOH, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.55500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 82 CB SER B 82 OG 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 9 CA - CB - SG ANGL. DEV. = -12.1 DEGREES REMARK 500 MET A 52 CG - SD - CE ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 146 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 CYS B 9 CA - CB - SG ANGL. DEV. = -13.6 DEGREES REMARK 500 LEU B 68 CB - CG - CD1 ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU B 137 CB - CG - CD1 ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 157 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 157 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG B 157 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 LYS B 164 CD - CE - NZ ANGL. DEV. = 24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 9 -81.39 -113.65 REMARK 500 CYS B 9 -80.79 -118.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WV7 RELATED DB: PDB REMARK 900 RELATED ID: 3WV8 RELATED DB: PDB REMARK 900 RELATED ID: 3WV9 RELATED DB: PDB REMARK 900 RELATED ID: 3WVA RELATED DB: PDB REMARK 900 RELATED ID: 3WVC RELATED DB: PDB DBREF 3WVB A 1 167 UNP Q58649 Y1251_METJA 1 167 DBREF 3WVB B 1 167 UNP Q58649 Y1251_METJA 1 167 SEQADV 3WVB GLY A -2 UNP Q58649 EXPRESSION TAG SEQADV 3WVB SER A -1 UNP Q58649 EXPRESSION TAG SEQADV 3WVB HIS A 0 UNP Q58649 EXPRESSION TAG SEQADV 3WVB GLY B -2 UNP Q58649 EXPRESSION TAG SEQADV 3WVB SER B -1 UNP Q58649 EXPRESSION TAG SEQADV 3WVB HIS B 0 UNP Q58649 EXPRESSION TAG SEQRES 1 A 170 GLY SER HIS MET ILE THR VAL ALA THR ALA GLU CYS PHE SEQRES 2 A 170 THR HIS ALA ASN ILE GLY LEU THR ILE HIS LYS ALA ALA SEQRES 3 A 170 ALA GLY TYR GLU ASP PHE GLU PHE LYS TYR LEU PHE SER SEQRES 4 A 170 GLU GLU ASP LEU LYS LEU MET LYS ASN VAL ARG VAL ILE SEQRES 5 A 170 SER ALA MET PHE VAL PRO SER ILE ILE GLY VAL GLU LYS SEQRES 6 A 170 LEU LEU ASP ILE LYS LEU PRO GLU PRO ASP PHE ASN TYR SEQRES 7 A 170 LYS TYR ALA LYS ALA TYR SER GLU GLU LYS ASP LEU GLU SEQRES 8 A 170 VAL ALA LYS LEU MET ALA GLU GLY LEU LYS LYS LYS LEU SEQRES 9 A 170 ASN VAL ASN ILE SER ILE GLY SER THR ALA GLY VAL GLY SEQRES 10 A 170 ARG GLY ALA ILE CYS ILE LEU THR ASP ASN ASN ARG TYR SEQRES 11 A 170 LEU PHE THR SER ASP VAL TYR ALA ASN LEU ILE THR PHE SEQRES 12 A 170 GLU ASN ILE LYS GLU ARG GLN LYS ASN GLY ILE GLU LYS SEQRES 13 A 170 GLY ILE LYS ARG PHE LEU GLU ILE LEU LYS LYS GLU TYR SEQRES 14 A 170 PHE SEQRES 1 B 170 GLY SER HIS MET ILE THR VAL ALA THR ALA GLU CYS PHE SEQRES 2 B 170 THR HIS ALA ASN ILE GLY LEU THR ILE HIS LYS ALA ALA SEQRES 3 B 170 ALA GLY TYR GLU ASP PHE GLU PHE LYS TYR LEU PHE SER SEQRES 4 B 170 GLU GLU ASP LEU LYS LEU MET LYS ASN VAL ARG VAL ILE SEQRES 5 B 170 SER ALA MET PHE VAL PRO SER ILE ILE GLY VAL GLU LYS SEQRES 6 B 170 LEU LEU ASP ILE LYS LEU PRO GLU PRO ASP PHE ASN TYR SEQRES 7 B 170 LYS TYR ALA LYS ALA TYR SER GLU GLU LYS ASP LEU GLU SEQRES 8 B 170 VAL ALA LYS LEU MET ALA GLU GLY LEU LYS LYS LYS LEU SEQRES 9 B 170 ASN VAL ASN ILE SER ILE GLY SER THR ALA GLY VAL GLY SEQRES 10 B 170 ARG GLY ALA ILE CYS ILE LEU THR ASP ASN ASN ARG TYR SEQRES 11 B 170 LEU PHE THR SER ASP VAL TYR ALA ASN LEU ILE THR PHE SEQRES 12 B 170 GLU ASN ILE LYS GLU ARG GLN LYS ASN GLY ILE GLU LYS SEQRES 13 B 170 GLY ILE LYS ARG PHE LEU GLU ILE LEU LYS LYS GLU TYR SEQRES 14 B 170 PHE FORMUL 3 HOH *333(H2 O) HELIX 1 1 ALA A 13 GLY A 25 1 13 HELIX 2 2 PHE A 31 PHE A 35 5 5 HELIX 3 3 SER A 36 LYS A 44 1 9 HELIX 4 4 SER A 56 ASP A 65 1 10 HELIX 5 5 SER A 82 ASN A 102 1 21 HELIX 6 6 ASN A 142 PHE A 167 1 26 HELIX 7 7 ALA B 13 ALA B 24 1 12 HELIX 8 8 PHE B 31 PHE B 35 5 5 HELIX 9 9 SER B 36 LYS B 44 1 9 HELIX 10 10 SER B 56 ASP B 65 1 10 HELIX 11 11 SER B 82 ASN B 102 1 21 HELIX 12 12 ASN B 142 PHE B 167 1 26 SHEET 1 A10 ARG A 126 PHE A 129 0 SHEET 2 A10 ALA A 117 LEU A 121 -1 N ILE A 120 O TYR A 127 SHEET 3 A10 ILE A 105 THR A 110 -1 N SER A 106 O LEU A 121 SHEET 4 A10 ILE A 2 GLU A 8 1 N ALA A 7 O ILE A 107 SHEET 5 A10 VAL A 46 PHE A 53 1 O MET A 52 N GLU A 8 SHEET 6 A10 VAL B 46 PHE B 53 -1 O PHE B 53 N ALA A 51 SHEET 7 A10 ILE B 2 GLU B 8 1 N GLU B 8 O MET B 52 SHEET 8 A10 ILE B 105 THR B 110 1 O ILE B 107 N ALA B 7 SHEET 9 A10 ALA B 117 LEU B 121 -1 O LEU B 121 N SER B 106 SHEET 10 A10 ARG B 126 PHE B 129 -1 O TYR B 127 N ILE B 120 SHEET 1 B 2 VAL A 113 GLY A 114 0 SHEET 2 B 2 ALA A 135 ASN A 136 -1 O ALA A 135 N GLY A 114 SHEET 1 C 2 VAL B 113 GLY B 114 0 SHEET 2 C 2 ALA B 135 ASN B 136 -1 O ALA B 135 N GLY B 114 CRYST1 45.310 73.110 45.530 90.00 102.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022070 0.000000 0.004780 0.00000 SCALE2 0.000000 0.013678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022473 0.00000