HEADER HYDROLASE/DNA 21-MAY-14 3WVG TITLE TIME-RESOLVED CRYSTAL STRUCTURE OF HINDIII WITH 0SEC SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE-2 RESTRICTION ENZYME HINDIII; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: R.HINDIII, ENDONUCLEASE HINDIII, TYPE II RESTRICTION ENZYME COMPND 5 HINDIII; COMPND 6 EC: 3.1.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*GP*CP*TP*TP*GP*GP*C)-3'); COMPND 10 CHAIN: G, H, K, L, E, F, I, J; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THIS DNA SEQUENCE SYNTHESIZED CHEMICALLY CONTAINS COMPND 13 COGNATE HINDIIIR RECOGNITION SEQUENCE AND ELONGATED SCAFFOLDS ON BOTH COMPND 14 SIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: HINDIIIR, HI_1393; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS FREEZE-TRAP, TIME-RESOLVED, TYPE IIP RESTRICTION ENDONUCLEASE, KEYWDS 2 RESTRICTION ENDONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KAWAMURA,T.KOBAYASHI,N.WATANABE REVDAT 2 08-NOV-23 3WVG 1 REMARK LINK REVDAT 1 08-APR-15 3WVG 0 JRNL AUTH T.KAWAMURA,T.KOBAYASHI,N.WATANABE JRNL TITL ANALYSIS OF THE HINDIII-CATALYZED REACTION BY TIME-RESOLVED JRNL TITL 2 CRYSTALLOGRAPHY JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 256 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664735 JRNL DOI 10.1107/S1399004714025188 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 93315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6353 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2730 REMARK 3 BIN FREE R VALUE SET COUNT : 335 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9808 REMARK 3 NUCLEIC ACID ATOMS : 1944 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.020 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12167 ; 0.016 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 10946 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16771 ; 1.783 ; 1.809 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25314 ; 0.990 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1188 ; 6.243 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 488 ;40.884 ;25.656 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2000 ;16.657 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;14.695 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1795 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12264 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2760 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4764 ; 3.123 ; 3.540 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4763 ; 3.122 ; 3.540 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5948 ; 4.554 ; 5.296 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WVG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000096842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93316 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3A4K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG 3350, 300MM NASCN, 10% REMARK 280 GLYCEROL, 100MM TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.29150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 1 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 MET C 0 REMARK 465 LYS C 1 REMARK 465 MET D 0 REMARK 465 LYS D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 262 NH1 ARG B 264 1.96 REMARK 500 NH1 ARG A 264 O PHE B 262 2.07 REMARK 500 O4 DT I 8 N6 DA J 5 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 196 CD - CE - NZ ANGL. DEV. = 16.2 DEGREES REMARK 500 ASP C 123 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG D 116 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG K 6 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC K 12 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG E 11 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG F 10 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG F 11 O5' - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 DC I 12 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 -2.44 72.86 REMARK 500 ASN A 79 48.12 82.64 REMARK 500 ARG A 88 -78.11 -102.12 REMARK 500 PHE A 101 -155.59 -138.19 REMARK 500 THR A 117 -103.05 -86.42 REMARK 500 GLU A 134 -122.47 54.66 REMARK 500 ASN A 184 -19.62 -49.85 REMARK 500 ASN A 276 58.55 32.47 REMARK 500 ASN B 79 41.56 80.94 REMARK 500 ARG B 88 -73.39 -101.77 REMARK 500 THR B 117 -103.08 -80.12 REMARK 500 GLU B 134 -118.01 53.39 REMARK 500 ASN C 79 37.65 78.69 REMARK 500 ARG C 88 -79.25 -95.25 REMARK 500 THR C 117 -104.81 -86.39 REMARK 500 GLU C 134 -124.14 51.54 REMARK 500 ASN C 261 58.91 -115.45 REMARK 500 ASN D 79 43.44 79.18 REMARK 500 ARG D 88 -70.62 -96.34 REMARK 500 PHE D 101 -155.21 -129.59 REMARK 500 THR D 117 -98.45 -82.05 REMARK 500 LYS D 125 50.49 36.13 REMARK 500 GLU D 134 -112.98 52.67 REMARK 500 ASN D 261 49.83 -81.60 REMARK 500 THR D 263 -153.38 -59.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 17 GLN B 18 -149.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD2 REMARK 620 2 ASP A 108 OD1 83.9 REMARK 620 3 ALA A 109 O 99.2 74.1 REMARK 620 4 HOH A 479 O 75.6 154.4 94.0 REMARK 620 5 DA E 5 OP1 100.6 98.9 158.1 99.8 REMARK 620 6 HOH E 218 O 166.2 82.3 75.8 117.3 82.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 HOH A 474 O 93.3 REMARK 620 3 HOH A 475 O 92.8 89.0 REMARK 620 4 HOH A 476 O 88.2 79.9 168.9 REMARK 620 5 DA E 4 O3' 156.9 109.5 91.4 92.0 REMARK 620 6 DA E 5 OP1 99.3 161.6 77.1 113.7 59.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD2 REMARK 620 2 ASP B 108 OD1 88.4 REMARK 620 3 ALA B 109 O 106.0 91.0 REMARK 620 4 HOH B 496 O 78.0 164.3 85.2 REMARK 620 5 DA F 5 OP1 100.9 91.3 153.0 99.0 REMARK 620 6 HOH F 221 O 168.7 80.6 76.9 113.2 77.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 93 OD1 REMARK 620 2 HOH B 497 O 80.0 REMARK 620 3 HOH B 498 O 89.2 79.5 REMARK 620 4 HOH B 499 O 97.8 168.6 89.3 REMARK 620 5 DA F 4 O3' 158.3 90.6 108.5 95.0 REMARK 620 6 DA F 5 OP1 103.8 108.0 165.9 83.4 60.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD2 REMARK 620 2 ASP C 108 OD1 93.0 REMARK 620 3 ALA C 109 O 105.2 82.8 REMARK 620 4 HOH C 471 O 76.3 163.3 87.6 REMARK 620 5 DA G 5 OP1 103.9 103.7 149.8 91.4 REMARK 620 6 HOH G 220 O 175.3 85.6 79.1 106.0 72.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA G 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 93 OD1 REMARK 620 2 HOH C 468 O 106.6 REMARK 620 3 HOH C 469 O 93.3 85.1 REMARK 620 4 HOH C 470 O 77.1 165.0 80.2 REMARK 620 5 DA G 4 O3' 158.5 86.5 105.0 94.8 REMARK 620 6 DA G 5 OP1 104.5 82.0 160.4 111.4 59.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD2 REMARK 620 2 ASP D 108 OD1 90.2 REMARK 620 3 ALA D 109 O 99.5 84.6 REMARK 620 4 HOH D 473 O 76.3 155.3 77.5 REMARK 620 5 DA H 5 OP1 103.3 102.7 156.0 100.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 93 OD1 REMARK 620 2 HOH D 474 O 101.3 REMARK 620 3 HOH D 475 O 84.3 87.2 REMARK 620 4 HOH D 476 O 82.6 156.7 70.2 REMARK 620 5 DA H 4 O3' 160.6 96.8 103.7 83.6 REMARK 620 6 DA H 5 OP1 111.1 91.8 164.4 108.4 61.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA G 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WVH RELATED DB: PDB REMARK 900 RELATED ID: 3WVI RELATED DB: PDB REMARK 900 RELATED ID: 3WVK RELATED DB: PDB REMARK 900 RELATED ID: 3WVP RELATED DB: PDB DBREF 3WVG A 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVG B 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVG C 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVG D 0 299 UNP P43870 T2D3_HAEIN 1 300 DBREF 3WVG G 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG H 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG K 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG L 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG E 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG F 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG I 1 12 PDB 3WVG 3WVG 1 12 DBREF 3WVG J 1 12 PDB 3WVG 3WVG 1 12 SEQRES 1 A 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 A 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 A 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 A 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 A 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 A 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 A 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 A 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 A 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 A 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 A 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 A 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 A 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 A 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 A 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 A 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 A 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 A 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 A 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 A 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 A 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 A 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 A 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 A 300 LEU SEQRES 1 B 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 B 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 B 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 B 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 B 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 B 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 B 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 B 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 B 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 B 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 B 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 B 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 B 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 B 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 B 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 B 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 B 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 B 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 B 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 B 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 B 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 B 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 B 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 B 300 LEU SEQRES 1 C 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 C 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 C 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 C 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 C 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 C 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 C 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 C 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 C 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 C 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 C 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 C 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 C 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 C 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 C 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 C 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 C 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 C 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 C 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 C 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 C 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 C 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 C 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 C 300 LEU SEQRES 1 D 300 MET LYS LYS SER ALA LEU GLU LYS LEU LEU SER LEU ILE SEQRES 2 D 300 GLU ASN LEU THR ASN GLN GLU PHE LYS GLN ALA THR ASN SEQRES 3 D 300 SER LEU ILE SER PHE ILE TYR LYS LEU ASN ARG ASN GLU SEQRES 4 D 300 VAL ILE GLU LEU VAL ARG SER ILE GLY ILE LEU PRO GLU SEQRES 5 D 300 ALA ILE LYS PRO SER SER THR GLN GLU LYS LEU PHE SER SEQRES 6 D 300 LYS ALA GLY ASP ILE VAL LEU ALA LYS ALA PHE GLN LEU SEQRES 7 D 300 LEU ASN LEU ASN SER LYS PRO LEU GLU GLN ARG GLY ASN SEQRES 8 D 300 ALA GLY ASP VAL ILE ALA LEU SER LYS GLU PHE ASN TYR SEQRES 9 D 300 GLY LEU VAL ALA ASP ALA LYS SER PHE ARG LEU SER ARG SEQRES 10 D 300 THR ALA LYS ASN GLN LYS ASP PHE LYS VAL LYS ALA LEU SEQRES 11 D 300 SER GLU TRP ARG GLU ASP LYS ASP TYR ALA VAL LEU THR SEQRES 12 D 300 ALA PRO PHE PHE GLN TYR PRO THR THR LYS SER GLN ILE SEQRES 13 D 300 PHE LYS GLN SER LEU ASP GLU ASN VAL LEU LEU PHE SER SEQRES 14 D 300 TRP GLU HIS LEU ALA ILE LEU LEU GLN LEU ASP LEU GLU SEQRES 15 D 300 GLU THR ASN ILE PHE SER PHE GLU GLN LEU TRP ASN PHE SEQRES 16 D 300 PRO LYS LYS GLN SER LYS LYS THR SER VAL SER ASP ALA SEQRES 17 D 300 GLU ASN ASN PHE MET ARG ASP PHE ASN LYS TYR PHE MET SEQRES 18 D 300 ASP LEU PHE LYS ILE ASP LYS ASP THR LEU ASN GLN LEU SEQRES 19 D 300 LEU GLN LYS GLU ILE ASN PHE ILE GLU GLU ARG SER LEU SEQRES 20 D 300 ILE GLU LYS GLU TYR TRP LYS LYS GLN ILE ASN ILE ILE SEQRES 21 D 300 LYS ASN PHE THR ARG GLU GLU ALA ILE GLU ALA LEU LEU SEQRES 22 D 300 LYS ASP ILE ASN MET SER SER LYS ILE GLU THR ILE ASP SEQRES 23 D 300 SER PHE ILE LYS GLY ILE LYS SER ASN ASP ARG LEU TYR SEQRES 24 D 300 LEU SEQRES 1 G 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 H 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 K 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 L 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 E 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 F 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 I 12 DG DC DC DA DA DG DC DT DT DG DG DC SEQRES 1 J 12 DG DC DC DA DA DG DC DT DT DG DG DC HET NA A 301 1 HET NA B 301 1 HET GOL B 302 6 HET GOL B 303 6 HET NA C 301 1 HET GOL C 302 6 HET NA D 301 1 HET NA D 302 1 HET NA G 101 1 HET NA E 101 1 HET NA F 101 1 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 13 NA 8(NA 1+) FORMUL 15 GOL 3(C3 H8 O3) FORMUL 24 HOH *429(H2 O) HELIX 1 1 SER A 3 ASN A 14 1 12 HELIX 2 2 GLU A 19 LEU A 34 1 16 HELIX 3 3 ASN A 35 GLY A 47 1 13 HELIX 4 4 SER A 57 LEU A 78 1 22 HELIX 5 5 ASN A 120 LYS A 125 1 6 HELIX 6 6 LYS A 125 ARG A 133 1 9 HELIX 7 7 PRO A 144 TYR A 148 5 5 HELIX 8 8 SER A 153 ASN A 163 1 11 HELIX 9 9 TRP A 169 LEU A 178 1 10 HELIX 10 10 PHE A 188 ASN A 193 1 6 HELIX 11 11 ASN A 193 LYS A 201 1 9 HELIX 12 12 THR A 202 ALA A 207 5 6 HELIX 13 13 PHE A 211 LYS A 224 1 14 HELIX 14 14 ASP A 226 ASN A 261 1 36 HELIX 15 15 THR A 263 ILE A 275 1 13 HELIX 16 16 ASN A 276 SER A 293 1 18 HELIX 17 17 ASN A 294 TYR A 298 5 5 HELIX 18 18 SER B 3 ASN B 14 1 12 HELIX 19 19 GLU B 19 LYS B 33 1 15 HELIX 20 20 ASN B 35 GLY B 47 1 13 HELIX 21 21 SER B 57 LEU B 78 1 22 HELIX 22 22 ASN B 120 LYS B 125 1 6 HELIX 23 23 LYS B 125 ARG B 133 1 9 HELIX 24 24 PRO B 144 TYR B 148 5 5 HELIX 25 25 SER B 153 ASN B 163 1 11 HELIX 26 26 TRP B 169 LEU B 178 1 10 HELIX 27 27 PHE B 188 ASN B 193 1 6 HELIX 28 28 ASN B 193 LYS B 201 1 9 HELIX 29 29 THR B 202 ALA B 207 5 6 HELIX 30 30 PHE B 211 LYS B 224 1 14 HELIX 31 31 ASP B 226 ASN B 261 1 36 HELIX 32 32 THR B 263 ASN B 276 1 14 HELIX 33 33 ASN B 276 LYS B 292 1 17 HELIX 34 34 SER B 293 TYR B 298 5 6 HELIX 35 35 SER C 3 THR C 16 1 14 HELIX 36 36 GLU C 19 LYS C 33 1 15 HELIX 37 37 ASN C 35 ILE C 46 1 12 HELIX 38 38 SER C 57 LEU C 78 1 22 HELIX 39 39 ASN C 120 LYS C 125 1 6 HELIX 40 40 LYS C 125 ARG C 133 1 9 HELIX 41 41 PRO C 144 TYR C 148 5 5 HELIX 42 42 SER C 153 ASN C 163 1 11 HELIX 43 43 TRP C 169 LEU C 178 1 10 HELIX 44 44 PHE C 188 ASN C 193 1 6 HELIX 45 45 ASN C 193 LYS C 201 1 9 HELIX 46 46 THR C 202 ALA C 207 5 6 HELIX 47 47 PHE C 211 LYS C 224 1 14 HELIX 48 48 ASP C 226 ASN C 261 1 36 HELIX 49 49 GLU C 265 ASN C 276 1 12 HELIX 50 50 ASN C 276 SER C 293 1 18 HELIX 51 51 ASN C 294 TYR C 298 5 5 HELIX 52 52 SER D 3 ASN D 14 1 12 HELIX 53 53 GLU D 19 LYS D 33 1 15 HELIX 54 54 ASN D 35 ILE D 46 1 12 HELIX 55 55 SER D 57 LEU D 78 1 22 HELIX 56 56 ASN D 120 PHE D 124 5 5 HELIX 57 57 LYS D 125 ARG D 133 1 9 HELIX 58 58 PRO D 144 TYR D 148 5 5 HELIX 59 59 SER D 153 ASN D 163 1 11 HELIX 60 60 TRP D 169 LEU D 178 1 10 HELIX 61 61 PHE D 188 ASN D 193 1 6 HELIX 62 62 ASN D 193 LYS D 201 1 9 HELIX 63 63 THR D 202 ALA D 207 5 6 HELIX 64 64 PHE D 211 LYS D 224 1 14 HELIX 65 65 ASP D 226 ASN D 261 1 36 HELIX 66 66 ARG D 264 ASN D 276 1 13 HELIX 67 67 ASN D 276 SER D 293 1 18 HELIX 68 68 ASN D 294 TYR D 298 5 5 SHEET 1 A 2 ILE A 48 LEU A 49 0 SHEET 2 A 2 PHE A 112 ARG A 113 1 O PHE A 112 N LEU A 49 SHEET 1 B 5 LEU A 80 PRO A 84 0 SHEET 2 B 5 VAL A 94 SER A 98 -1 O ILE A 95 N LYS A 83 SHEET 3 B 5 GLY A 104 ALA A 109 -1 O ALA A 107 N VAL A 94 SHEET 4 B 5 TYR A 138 ALA A 143 1 O THR A 142 N ASP A 108 SHEET 5 B 5 LEU A 165 SER A 168 1 O PHE A 167 N LEU A 141 SHEET 1 C 2 ILE B 48 LEU B 49 0 SHEET 2 C 2 PHE B 112 ARG B 113 1 N PHE B 112 O LEU B 49 SHEET 1 D 5 ASN B 81 PRO B 84 0 SHEET 2 D 5 VAL B 94 LEU B 97 -1 O ILE B 95 N LYS B 83 SHEET 3 D 5 GLY B 104 ALA B 109 -1 O ALA B 107 N VAL B 94 SHEET 4 D 5 TYR B 138 ALA B 143 1 O THR B 142 N ASP B 108 SHEET 5 D 5 VAL B 164 SER B 168 1 O LEU B 165 N LEU B 141 SHEET 1 E 2 ILE C 48 LEU C 49 0 SHEET 2 E 2 PHE C 112 ARG C 113 1 O PHE C 112 N LEU C 49 SHEET 1 F 5 LEU C 80 PRO C 84 0 SHEET 2 F 5 VAL C 94 SER C 98 -1 O LEU C 97 N ASN C 81 SHEET 3 F 5 GLY C 104 ALA C 109 -1 O ALA C 107 N VAL C 94 SHEET 4 F 5 TYR C 138 ALA C 143 1 O THR C 142 N ASP C 108 SHEET 5 F 5 LEU C 165 SER C 168 1 O LEU C 165 N LEU C 141 SHEET 1 G 2 ILE D 48 LEU D 49 0 SHEET 2 G 2 PHE D 112 ARG D 113 1 O PHE D 112 N LEU D 49 SHEET 1 H 5 LEU D 80 PRO D 84 0 SHEET 2 H 5 VAL D 94 SER D 98 -1 O LEU D 97 N ASN D 81 SHEET 3 H 5 GLY D 104 ALA D 109 -1 O ALA D 107 N VAL D 94 SHEET 4 H 5 TYR D 138 ALA D 143 1 O THR D 142 N ASP D 108 SHEET 5 H 5 LEU D 165 SER D 168 1 O LEU D 165 N LEU D 141 LINK OD2 ASP A 93 NA NA A 301 1555 1555 2.30 LINK OD1 ASP A 93 NA NA E 101 1555 1555 2.32 LINK OD1 ASP A 108 NA NA A 301 1555 1555 2.70 LINK O ALA A 109 NA NA A 301 1555 1555 2.16 LINK NA NA A 301 O HOH A 479 1555 1555 2.32 LINK NA NA A 301 OP1 DA E 5 1555 1555 2.22 LINK NA NA A 301 O HOH E 218 1555 1555 2.58 LINK O HOH A 474 NA NA E 101 1555 1555 2.46 LINK O HOH A 475 NA NA E 101 1555 1555 2.59 LINK O HOH A 476 NA NA E 101 1555 1555 2.65 LINK OD2 ASP B 93 NA NA B 301 1555 1555 2.27 LINK OD1 ASP B 93 NA NA F 101 1555 1555 2.37 LINK OD1 ASP B 108 NA NA B 301 1555 1555 2.67 LINK O ALA B 109 NA NA B 301 1555 1555 2.16 LINK NA NA B 301 O HOH B 496 1555 1555 2.28 LINK NA NA B 301 OP1 DA F 5 1555 1555 2.24 LINK NA NA B 301 O HOH F 221 1555 1555 2.64 LINK O HOH B 497 NA NA F 101 1555 1555 2.45 LINK O HOH B 498 NA NA F 101 1555 1555 2.44 LINK O HOH B 499 NA NA F 101 1555 1555 2.43 LINK OD2 ASP C 93 NA NA C 301 1555 1555 2.35 LINK OD1 ASP C 93 NA NA G 101 1555 1555 2.36 LINK OD1 ASP C 108 NA NA C 301 1555 1555 2.53 LINK O ALA C 109 NA NA C 301 1555 1555 2.16 LINK NA NA C 301 O HOH C 471 1555 1555 2.27 LINK NA NA C 301 OP1 DA G 5 1555 1555 2.12 LINK NA NA C 301 O HOH G 220 1555 1555 2.51 LINK O HOH C 468 NA NA G 101 1555 1555 2.45 LINK O HOH C 469 NA NA G 101 1555 1555 2.56 LINK O HOH C 470 NA NA G 101 1555 1555 2.42 LINK OD2 ASP D 93 NA NA D 301 1555 1555 2.32 LINK OD1 ASP D 93 NA NA D 302 1555 1555 2.30 LINK OD1 ASP D 108 NA NA D 301 1555 1555 2.63 LINK O ALA D 109 NA NA D 301 1555 1555 2.16 LINK NA NA D 301 O HOH D 473 1555 1555 2.43 LINK NA NA D 301 OP1 DA H 5 1555 1555 2.12 LINK NA NA D 302 O HOH D 474 1555 1555 2.37 LINK NA NA D 302 O HOH D 475 1555 1555 2.68 LINK NA NA D 302 O HOH D 476 1555 1555 2.78 LINK NA NA D 302 O3' DA H 4 1555 1555 2.47 LINK NA NA D 302 OP1 DA H 5 1555 1555 2.25 LINK O3' DA G 4 NA NA G 101 1555 1555 2.44 LINK OP1 DA G 5 NA NA G 101 1555 1555 2.52 LINK O3' DA E 4 NA NA E 101 1555 1555 2.41 LINK OP1 DA E 5 NA NA E 101 1555 1555 2.44 LINK O3' DA F 4 NA NA F 101 1555 1555 2.49 LINK OP1 DA F 5 NA NA F 101 1555 1555 2.37 SITE 1 AC1 6 ASP A 93 ASP A 108 ALA A 109 HOH A 479 SITE 2 AC1 6 DA E 5 HOH E 218 SITE 1 AC2 6 ASP B 93 ASP B 108 ALA B 109 HOH B 496 SITE 2 AC2 6 DA F 5 HOH F 221 SITE 1 AC3 7 PHE A 145 PHE A 146 TYR A 148 ASN A 210 SITE 2 AC3 7 MET A 212 ARG B 296 TYR B 298 SITE 1 AC4 8 ARG A 296 TYR A 298 PHE B 145 PHE B 146 SITE 2 AC4 8 TYR B 148 PRO B 149 ASN B 210 MET B 212 SITE 1 AC5 6 ASP C 93 ASP C 108 ALA C 109 HOH C 471 SITE 2 AC5 6 DA G 5 HOH G 220 SITE 1 AC6 8 PHE C 145 PHE C 146 TYR C 148 PRO C 149 SITE 2 AC6 8 ASN C 210 MET C 212 ARG D 296 TYR D 298 SITE 1 AC7 6 ASP D 93 ASP D 108 ALA D 109 NA D 302 SITE 2 AC7 6 HOH D 473 DA H 5 SITE 1 AC8 7 ASP D 93 NA D 301 HOH D 474 HOH D 475 SITE 2 AC8 7 HOH D 476 DA H 4 DA H 5 SITE 1 AC9 6 ASP C 93 HOH C 468 HOH C 469 HOH C 470 SITE 2 AC9 6 DA G 4 DA G 5 SITE 1 BC1 6 ASP A 93 HOH A 474 HOH A 475 HOH A 476 SITE 2 BC1 6 DA E 4 DA E 5 SITE 1 BC2 6 ASP B 93 HOH B 497 HOH B 498 HOH B 499 SITE 2 BC2 6 DA F 4 DA F 5 CRYST1 80.656 140.583 96.294 90.00 112.10 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012398 0.000000 0.005034 0.00000 SCALE2 0.000000 0.007113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011208 0.00000