HEADER HYDROLASE 22-MAY-14 3WVJ TITLE THE CRYSTAL STRUCTURE OF NATIVE GLYCOSIDIC HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 30-249; COMPND 5 SYNONYM: 1,3-1,4-BETA-D-GLUCAN 4-GLUCANOHYDROLASE, ENDO-BETA-1,3-1,4 COMPND 6 GLUCANASE, LAMINARINASE, LICHENASE; COMPND 7 EC: 3.2.1.73; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: LICB, LAM1, CTHE_0211; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21TRXB (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32 XA/LIC KEYWDS BETA-1, 3-1, 4-GLUCANASE, THERMOSTABILITY, INDUSTRIAL ENZYME, PICHIA KEYWDS 2 PASTORIS, A CLASSIC BETA-JELLYROLL FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.C.CHEN,J.W.HUANG,P.ZHAO,T.P.KO,C.H.HUANG,H.C.CHAN,Z.HUANG,W.LIU, AUTHOR 2 Y.S.CHENG,J.R.LIU,R.T.GUO REVDAT 2 08-NOV-23 3WVJ 1 REMARK REVDAT 1 24-JUN-15 3WVJ 0 JRNL AUTH C.C.CHEN,J.W.HUANG,P.ZHAO,T.P.KO,C.H.HUANG,H.C.CHAN,Z.HUANG, JRNL AUTH 2 W.LIU,Y.S.CHENG,J.R.LIU,R.T.GUO JRNL TITL STRUCTURAL ANALYSES AND YEAST PRODUCTION OF THE JRNL TITL 2 BETA-1,3-1,4-GLUCANASE CATALYTIC MODULE ENCODED BY THE LICB JRNL TITL 3 GENE OF CLOSTRIDIUM THERMOCELLUM. JRNL REF ENZYME.MICROB.TECHNOL. V. 71 1 2015 JRNL REFN ISSN 0141-0229 JRNL PMID 25765303 JRNL DOI 10.1016/J.ENZMICTEC.2015.01.002 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.80000 REMARK 3 B22 (A**2) : 1.80000 REMARK 3 B33 (A**2) : -2.70000 REMARK 3 B12 (A**2) : 0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3793 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5154 ; 2.258 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 8.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;36.126 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;17.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 495 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2994 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 248 REMARK 3 ORIGIN FOR THE GROUP (A): -18.1162 21.0299 -29.5831 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.1401 REMARK 3 T33: 0.2332 T12: -0.0584 REMARK 3 T13: -0.0904 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 1.5219 L22: 2.0663 REMARK 3 L33: 2.8522 L12: 0.0101 REMARK 3 L13: 0.2927 L23: -1.5511 REMARK 3 S TENSOR REMARK 3 S11: 0.3205 S12: 0.0992 S13: -0.0695 REMARK 3 S21: -0.3129 S22: -0.4263 S23: -0.0970 REMARK 3 S31: 0.6081 S32: 0.2383 S33: 0.1058 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 249 REMARK 3 ORIGIN FOR THE GROUP (A): -35.8429 20.2069 -2.5273 REMARK 3 T TENSOR REMARK 3 T11: 0.4911 T22: 0.1836 REMARK 3 T33: 0.2451 T12: -0.2346 REMARK 3 T13: -0.0682 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.8795 L22: 0.7693 REMARK 3 L33: 1.6036 L12: 0.0876 REMARK 3 L13: -0.0177 L23: -0.6368 REMARK 3 S TENSOR REMARK 3 S11: 0.0738 S12: -0.0160 S13: -0.0851 REMARK 3 S21: 0.1214 S22: 0.0161 S23: -0.0022 REMARK 3 S31: -0.0444 S32: -0.2219 S33: -0.0899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3WVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000096845. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43722 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 64.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M CITRIC ACID, 0.06M BIS-TRIS REMARK 280 PROPANE, PH 6.4, 18% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.97267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.94533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.94533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.97267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 447 O HOH B 572 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 43 ND2 ASN B 202 4565 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 153 CE2 TRP A 153 CD2 0.088 REMARK 500 TRP A 182 CE2 TRP A 182 CD2 0.073 REMARK 500 ARG B 96 CD ARG B 96 NE -0.117 REMARK 500 TRP B 182 CE2 TRP B 182 CD2 0.086 REMARK 500 TRP B 223 CE2 TRP B 223 CD2 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 96 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ARG A 96 NE - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG B 96 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 96 NE - CZ - NH1 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG B 96 NE - CZ - NH2 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG B 109 CG - CD - NE ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG B 109 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP B 228 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 43 99.77 -167.30 REMARK 500 SER A 58 -137.45 57.51 REMARK 500 ASN A 61 44.30 -97.12 REMARK 500 TYR A 103 151.62 -41.09 REMARK 500 ASN A 115 138.07 -172.82 REMARK 500 ASN B 43 86.38 -179.61 REMARK 500 SER B 58 -139.09 61.71 REMARK 500 ASN B 61 39.30 -92.45 REMARK 500 ASN B 115 143.18 176.40 REMARK 500 ASP B 145 89.18 -155.37 REMARK 500 THR B 146 20.37 -77.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 227 ASP B 228 -143.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B3P B 302 DBREF 3WVJ A 30 249 UNP A3DBX3 GUB_CLOTH 30 249 DBREF 3WVJ B 30 249 UNP A3DBX3 GUB_CLOTH 30 249 SEQRES 1 A 220 ALA THR VAL VAL ASN THR PRO PHE VAL ALA VAL PHE SER SEQRES 2 A 220 ASN PHE ASP SER SER GLN TRP GLU LYS ALA ASP TRP ALA SEQRES 3 A 220 ASN GLY SER VAL PHE ASN CYS VAL TRP LYS PRO SER GLN SEQRES 4 A 220 VAL THR PHE SER ASN GLY LYS MET ILE LEU THR LEU ASP SEQRES 5 A 220 ARG GLU TYR GLY GLY SER TYR PRO TYR LYS SER GLY GLU SEQRES 6 A 220 TYR ARG THR LYS SER PHE PHE GLY TYR GLY TYR TYR GLU SEQRES 7 A 220 VAL ARG MET LYS ALA ALA LYS ASN VAL GLY ILE VAL SER SEQRES 8 A 220 SER PHE PHE THR TYR THR GLY PRO SER ASP ASN ASN PRO SEQRES 9 A 220 TRP ASP GLU ILE ASP ILE GLU PHE LEU GLY LYS ASP THR SEQRES 10 A 220 THR LYS VAL GLN PHE ASN TRP TYR LYS ASN GLY VAL GLY SEQRES 11 A 220 GLY ASN GLU TYR LEU HIS ASN LEU GLY PHE ASP ALA SER SEQRES 12 A 220 GLN ASP PHE HIS THR TYR GLY PHE GLU TRP ARG PRO ASP SEQRES 13 A 220 TYR ILE ASP PHE TYR VAL ASP GLY LYS LYS VAL TYR ARG SEQRES 14 A 220 GLY THR ARG ASN ILE PRO VAL THR PRO GLY LYS ILE MET SEQRES 15 A 220 MET ASN LEU TRP PRO GLY ILE GLY VAL ASP GLU TRP LEU SEQRES 16 A 220 GLY ARG TYR ASP GLY ARG THR PRO LEU GLN ALA GLU TYR SEQRES 17 A 220 GLU TYR VAL LYS TYR TYR PRO ASN GLY VAL PRO GLN SEQRES 1 B 220 ALA THR VAL VAL ASN THR PRO PHE VAL ALA VAL PHE SER SEQRES 2 B 220 ASN PHE ASP SER SER GLN TRP GLU LYS ALA ASP TRP ALA SEQRES 3 B 220 ASN GLY SER VAL PHE ASN CYS VAL TRP LYS PRO SER GLN SEQRES 4 B 220 VAL THR PHE SER ASN GLY LYS MET ILE LEU THR LEU ASP SEQRES 5 B 220 ARG GLU TYR GLY GLY SER TYR PRO TYR LYS SER GLY GLU SEQRES 6 B 220 TYR ARG THR LYS SER PHE PHE GLY TYR GLY TYR TYR GLU SEQRES 7 B 220 VAL ARG MET LYS ALA ALA LYS ASN VAL GLY ILE VAL SER SEQRES 8 B 220 SER PHE PHE THR TYR THR GLY PRO SER ASP ASN ASN PRO SEQRES 9 B 220 TRP ASP GLU ILE ASP ILE GLU PHE LEU GLY LYS ASP THR SEQRES 10 B 220 THR LYS VAL GLN PHE ASN TRP TYR LYS ASN GLY VAL GLY SEQRES 11 B 220 GLY ASN GLU TYR LEU HIS ASN LEU GLY PHE ASP ALA SER SEQRES 12 B 220 GLN ASP PHE HIS THR TYR GLY PHE GLU TRP ARG PRO ASP SEQRES 13 B 220 TYR ILE ASP PHE TYR VAL ASP GLY LYS LYS VAL TYR ARG SEQRES 14 B 220 GLY THR ARG ASN ILE PRO VAL THR PRO GLY LYS ILE MET SEQRES 15 B 220 MET ASN LEU TRP PRO GLY ILE GLY VAL ASP GLU TRP LEU SEQRES 16 B 220 GLY ARG TYR ASP GLY ARG THR PRO LEU GLN ALA GLU TYR SEQRES 17 B 220 GLU TYR VAL LYS TYR TYR PRO ASN GLY VAL PRO GLN HET B3P A 301 19 HET B3P A 302 19 HET B3P B 301 19 HET B3P B 302 19 HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL FORMUL 3 B3P 4(C11 H26 N2 O6) FORMUL 7 HOH *342(H2 O) HELIX 1 1 ASP A 45 SER A 47 5 3 HELIX 2 2 GLY A 127 ASN A 131 5 5 HELIX 3 3 VAL A 220 GLY A 225 1 6 HELIX 4 4 ASP B 45 SER B 47 5 3 HELIX 5 5 GLY B 127 ASN B 131 5 5 HELIX 6 6 VAL B 220 GLY B 225 1 6 SHEET 1 A 4 PHE A 37 VAL A 40 0 SHEET 2 A 4 LEU A 233 TYR A 243 -1 O VAL A 240 N ALA A 39 SHEET 3 A 4 LYS A 75 ARG A 82 -1 N LEU A 78 O ALA A 235 SHEET 4 A 4 VAL A 69 SER A 72 -1 N THR A 70 O ILE A 77 SHEET 1 B 8 VAL A 63 TRP A 64 0 SHEET 2 B 8 TYR A 90 SER A 92 1 O SER A 92 N VAL A 63 SHEET 3 B 8 LYS A 75 ARG A 82 -1 N ASP A 81 O LYS A 91 SHEET 4 B 8 LEU A 233 TYR A 243 -1 O ALA A 235 N LEU A 78 SHEET 5 B 8 GLY A 104 LYS A 111 -1 N GLU A 107 O LYS A 241 SHEET 6 B 8 HIS A 176 ARG A 183 -1 O TYR A 178 N VAL A 108 SHEET 7 B 8 TYR A 186 VAL A 191 -1 O TYR A 190 N GLY A 179 SHEET 8 B 8 LYS A 194 GLY A 199 -1 O VAL A 196 N PHE A 189 SHEET 1 C 7 TRP A 49 LYS A 51 0 SHEET 2 C 7 GLU A 94 PHE A 101 -1 O ARG A 96 N GLU A 50 SHEET 3 C 7 GLY A 208 PRO A 216 -1 O MET A 212 N TYR A 95 SHEET 4 C 7 ILE A 118 THR A 126 -1 N TYR A 125 O LYS A 209 SHEET 5 C 7 ASP A 135 LEU A 142 -1 O PHE A 141 N SER A 120 SHEET 6 C 7 LYS A 148 TYR A 154 -1 O ASN A 152 N ASP A 138 SHEET 7 C 7 TYR A 163 ASN A 166 -1 O HIS A 165 N VAL A 149 SHEET 1 D 4 PHE B 37 VAL B 40 0 SHEET 2 D 4 LEU B 233 TYR B 243 -1 O VAL B 240 N ALA B 39 SHEET 3 D 4 LYS B 75 ARG B 82 -1 N LEU B 80 O LEU B 233 SHEET 4 D 4 VAL B 69 SER B 72 -1 N THR B 70 O ILE B 77 SHEET 1 E 8 VAL B 63 TRP B 64 0 SHEET 2 E 8 TYR B 90 SER B 92 1 O SER B 92 N VAL B 63 SHEET 3 E 8 LYS B 75 ARG B 82 -1 N ASP B 81 O LYS B 91 SHEET 4 E 8 LEU B 233 TYR B 243 -1 O LEU B 233 N LEU B 80 SHEET 5 E 8 GLY B 104 LYS B 111 -1 N ARG B 109 O GLU B 238 SHEET 6 E 8 HIS B 176 ARG B 183 -1 O PHE B 180 N TYR B 106 SHEET 7 E 8 TYR B 186 VAL B 191 -1 O ASP B 188 N GLU B 181 SHEET 8 E 8 LYS B 194 GLY B 199 -1 O TYR B 197 N PHE B 189 SHEET 1 F 7 TRP B 49 LYS B 51 0 SHEET 2 F 7 GLU B 94 THR B 97 -1 O ARG B 96 N GLU B 50 SHEET 3 F 7 LYS B 209 PRO B 216 -1 O ILE B 210 N THR B 97 SHEET 4 F 7 ILE B 118 THR B 126 -1 N PHE B 123 O MET B 211 SHEET 5 F 7 ASP B 135 LEU B 142 -1 O PHE B 141 N SER B 120 SHEET 6 F 7 LYS B 148 TYR B 154 -1 O ASN B 152 N ASP B 138 SHEET 7 F 7 TYR B 163 ASN B 166 -1 O HIS B 165 N VAL B 149 CISPEP 1 THR A 231 PRO A 232 0 -14.18 CISPEP 2 THR B 231 PRO B 232 0 -5.64 SITE 1 AC1 13 GLU A 140 TYR A 154 GLU A 162 TRP A 215 SITE 2 AC1 13 VAL A 220 TRP A 223 B3P A 302 HOH A 420 SITE 3 AC1 13 HOH A 427 HOH A 437 HOH A 468 HOH A 533 SITE 4 AC1 13 HOH A 559 SITE 1 AC2 16 ASN A 56 PHE A 60 GLU A 94 PHE A 123 SITE 2 AC2 16 TYR A 125 PRO A 128 TRP A 134 GLU A 136 SITE 3 AC2 16 ASN A 213 B3P A 301 HOH A 410 HOH A 413 SITE 4 AC2 16 HOH A 420 HOH A 490 HOH A 554 ASP B 53 SITE 1 AC3 10 GLU B 136 GLU B 140 TYR B 154 GLU B 162 SITE 2 AC3 10 TRP B 223 B3P B 302 HOH B 437 HOH B 463 SITE 3 AC3 10 HOH B 465 HOH B 546 SITE 1 AC4 15 ASP A 53 ASN B 56 PHE B 60 GLU B 94 SITE 2 AC4 15 ARG B 96 PHE B 123 TYR B 125 TRP B 134 SITE 3 AC4 15 GLU B 136 ASN B 213 B3P B 301 HOH B 415 SITE 4 AC4 15 HOH B 437 HOH B 465 HOH B 571 CRYST1 74.450 74.450 182.918 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013432 0.007755 0.000000 0.00000 SCALE2 0.000000 0.015510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005467 0.00000