HEADER ISOMERASE 13-JUN-14 3WW3 TITLE X-RAY STRUCTURES OF CELLULOMONAS PARAHOMINIS L-RIBOSE ISOMERASE WITH TITLE 2 NO LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-RIBOSE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLULOMONAS PARAHOMINIS; SOURCE 3 ORGANISM_TAXID: 285079; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CUPIN-TYPE BETA-BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.TERAMI,H.YOSHIDA,G.TAKATA,S.KAMITORI REVDAT 2 24-AUG-22 3WW3 1 JRNL REMARK SEQADV LINK REVDAT 1 29-APR-15 3WW3 0 JRNL AUTH Y.TERAMI,H.YOSHIDA,K.UECHI,K.MORIMOTO,G.TAKATA,S.KAMITORI JRNL TITL ESSENTIALITY OF TETRAMER FORMATION OF CELLULOMONAS JRNL TITL 2 PARAHOMINIS L-RIBOSE ISOMERASE INVOLVED IN NOVEL L-RIBOSE JRNL TITL 3 METABOLIC PATHWAY. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 99 6303 2015 JRNL REFN ESSN 1432-0614 JRNL PMID 25661811 JRNL DOI 10.1007/S00253-015-6417-4 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 5312516.940 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4156 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3588 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 376 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 0.16000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.13 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.860 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.350 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.080 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.970 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 45.74 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : LIGAND.PARAM REMARK 3 PARAMETER FILE 7 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 7 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3WW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000096865. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : COLLIMATING MIRROR:RHODIUM REMARK 200 COATED SILICON SINGLE CRYSTAL, REMARK 200 FOCUSING MIRROR:RHODIUM COATED REMARK 200 SILICON SINGLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41433 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 46.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.9M AMMONIUM ACETATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.26000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.26000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.29000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.26000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.53500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.29000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.26000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.53500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 THR A 213 REMARK 465 GLU A 214 REMARK 465 HIS A 215 REMARK 465 ALA A 216 REMARK 465 HIS A 217 REMARK 465 ASP A 218 REMARK 465 LYS A 219 REMARK 465 ALA A 220 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLU B 214 REMARK 465 HIS B 215 REMARK 465 ALA B 216 REMARK 465 HIS B 217 REMARK 465 ASP B 218 REMARK 465 LYS B 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 103 N - CA - C ANGL. DEV. = -20.1 DEGREES REMARK 500 CYS B 103 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 77.56 -156.00 REMARK 500 SER A 88 -151.03 -109.89 REMARK 500 PHE A 141 -59.96 -145.22 REMARK 500 PRO A 143 152.03 -48.81 REMARK 500 ARG A 243 -16.35 179.46 REMARK 500 ASN B 70 78.55 -156.06 REMARK 500 SER B 88 -150.49 -109.04 REMARK 500 ASP B 135 40.11 -81.72 REMARK 500 PHE B 141 -57.01 -154.77 REMARK 500 ARG B 243 -4.56 -145.58 REMARK 500 LEU B 244 -110.41 -55.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 HIS A 108 NE2 90.4 REMARK 620 3 GLU A 113 OE2 171.9 83.1 REMARK 620 4 HIS A 188 NE2 83.6 112.3 103.3 REMARK 620 5 HOH A 501 O 96.7 83.1 77.7 164.6 REMARK 620 6 HOH A 502 O 97.4 162.6 87.6 84.1 80.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 106 NE2 REMARK 620 2 HIS B 108 NE2 87.1 REMARK 620 3 GLU B 113 OE2 168.6 81.6 REMARK 620 4 HIS B 188 NE2 83.0 106.4 101.6 REMARK 620 5 HOH B 501 O 93.0 168.1 97.7 85.4 REMARK 620 6 HOH B 502 O 93.5 83.2 83.7 169.5 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WW1 RELATED DB: PDB REMARK 900 RELATED ID: 3WW2 RELATED DB: PDB REMARK 900 RELATED ID: 3WW4 RELATED DB: PDB DBREF 3WW3 A 2 249 UNP L0N3Y0 L0N3Y0_9CELL 2 249 DBREF 3WW3 B 2 249 UNP L0N3Y0 L0N3Y0_9CELL 2 249 SEQADV 3WW3 HIS A -6 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS A -5 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS A -4 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS A -3 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS A -2 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS A -1 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 GLY A 0 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 SER A 1 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 LEU A 119 UNP L0N3Y0 PHE 119 ENGINEERED MUTATION SEQADV 3WW3 PHE A 125 UNP L0N3Y0 LEU 125 ENGINEERED MUTATION SEQADV 3WW3 HIS B -6 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS B -5 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS B -4 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS B -3 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS B -2 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 HIS B -1 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 GLY B 0 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 SER B 1 UNP L0N3Y0 EXPRESSION TAG SEQADV 3WW3 LEU B 119 UNP L0N3Y0 PHE 119 ENGINEERED MUTATION SEQADV 3WW3 PHE B 125 UNP L0N3Y0 LEU 125 ENGINEERED MUTATION SEQRES 1 A 256 HIS HIS HIS HIS HIS HIS GLY SER THR ARG THR ALA ILE SEQRES 2 A 256 SER ARG ARG GLU TYR ASP GLU TRP LEU SER GLU ALA ALA SEQRES 3 A 256 SER LEU ALA ARG ALA LEU ARG TYR PRO VAL THR PRO GLU SEQRES 4 A 256 MET VAL ASN ASP SER ALA GLY ILE VAL PHE GLY ASP ASP SEQRES 5 A 256 GLN TYR GLU ALA PHE ALA HIS GLY LEU TRP SER ARG GLU SEQRES 6 A 256 PRO TYR GLU VAL MET VAL ILE LEU GLU SER LEU ASN GLU SEQRES 7 A 256 PRO ALA VAL ASP GLY LEU PRO ALA ALA GLY ALA ALA HIS SEQRES 8 A 256 ALA GLU TYR SER GLY LEU CYS ASP LYS LEU MET ILE VAL SEQRES 9 A 256 HIS PRO GLY LYS PHE CYS PRO PRO HIS PHE HIS GLN ARG SEQRES 10 A 256 LYS THR GLU SER TYR GLU VAL VAL LEU GLY GLU MET GLU SEQRES 11 A 256 VAL PHE TYR ALA PRO GLU PRO VAL THR VAL GLY ASP ASP SEQRES 12 A 256 ASP VAL LEU SER PHE SER PRO MET PRO GLU GLY SER PRO SEQRES 13 A 256 TRP PRO GLU GLY VAL ALA LEU PRO ALA GLY ARG GLU ASP SEQRES 14 A 256 SER TYR ALA GLY LEU THR SER TYR VAL ARG LEU ARG ALA SEQRES 15 A 256 GLY ASP PRO LYS PHE VAL MET HIS ARG LYS HIS LEU HIS SEQRES 16 A 256 ALA PHE ARG CYS PRO ALA ASP SER PRO VAL PRO LEU VAL SEQRES 17 A 256 VAL ARG GLU VAL SER THR TYR SER HIS GLU PRO THR GLU SEQRES 18 A 256 HIS ALA HIS ASP LYS ALA ALA PRO LEU PRO GLN TRP ARG SEQRES 19 A 256 GLY LEU HIS ASP ASN THR PHE VAL ALA GLU ALA ALA ASN SEQRES 20 A 256 SER GLY ARG LEU ALA THR ALA ILE ALA SEQRES 1 B 256 HIS HIS HIS HIS HIS HIS GLY SER THR ARG THR ALA ILE SEQRES 2 B 256 SER ARG ARG GLU TYR ASP GLU TRP LEU SER GLU ALA ALA SEQRES 3 B 256 SER LEU ALA ARG ALA LEU ARG TYR PRO VAL THR PRO GLU SEQRES 4 B 256 MET VAL ASN ASP SER ALA GLY ILE VAL PHE GLY ASP ASP SEQRES 5 B 256 GLN TYR GLU ALA PHE ALA HIS GLY LEU TRP SER ARG GLU SEQRES 6 B 256 PRO TYR GLU VAL MET VAL ILE LEU GLU SER LEU ASN GLU SEQRES 7 B 256 PRO ALA VAL ASP GLY LEU PRO ALA ALA GLY ALA ALA HIS SEQRES 8 B 256 ALA GLU TYR SER GLY LEU CYS ASP LYS LEU MET ILE VAL SEQRES 9 B 256 HIS PRO GLY LYS PHE CYS PRO PRO HIS PHE HIS GLN ARG SEQRES 10 B 256 LYS THR GLU SER TYR GLU VAL VAL LEU GLY GLU MET GLU SEQRES 11 B 256 VAL PHE TYR ALA PRO GLU PRO VAL THR VAL GLY ASP ASP SEQRES 12 B 256 ASP VAL LEU SER PHE SER PRO MET PRO GLU GLY SER PRO SEQRES 13 B 256 TRP PRO GLU GLY VAL ALA LEU PRO ALA GLY ARG GLU ASP SEQRES 14 B 256 SER TYR ALA GLY LEU THR SER TYR VAL ARG LEU ARG ALA SEQRES 15 B 256 GLY ASP PRO LYS PHE VAL MET HIS ARG LYS HIS LEU HIS SEQRES 16 B 256 ALA PHE ARG CYS PRO ALA ASP SER PRO VAL PRO LEU VAL SEQRES 17 B 256 VAL ARG GLU VAL SER THR TYR SER HIS GLU PRO THR GLU SEQRES 18 B 256 HIS ALA HIS ASP LYS ALA ALA PRO LEU PRO GLN TRP ARG SEQRES 19 B 256 GLY LEU HIS ASP ASN THR PHE VAL ALA GLU ALA ALA ASN SEQRES 20 B 256 SER GLY ARG LEU ALA THR ALA ILE ALA HET MN A 401 1 HET MN B 401 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *348(H2 O) HELIX 1 1 SER A 7 LEU A 25 1 19 HELIX 2 2 THR A 30 VAL A 34 5 5 HELIX 3 3 GLY A 43 TYR A 47 5 5 HELIX 4 4 GLU A 48 GLY A 53 1 6 HELIX 5 5 PRO A 78 SER A 88 5 11 HELIX 6 6 ARG A 160 ALA A 165 5 6 HELIX 7 7 LEU A 223 ARG A 227 5 5 HELIX 8 8 ALA A 236 GLY A 242 1 7 HELIX 9 9 ARG B 8 LEU B 25 1 18 HELIX 10 10 THR B 30 VAL B 34 5 5 HELIX 11 11 GLY B 43 TYR B 47 5 5 HELIX 12 12 GLU B 48 GLY B 53 1 6 HELIX 13 13 PRO B 78 SER B 88 5 11 HELIX 14 14 ARG B 160 ALA B 165 5 6 HELIX 15 15 LEU B 223 ARG B 227 5 5 HELIX 16 16 ALA B 236 SER B 241 1 6 SHEET 1 A 6 GLY A 39 VAL A 41 0 SHEET 2 A 6 VAL A 62 GLU A 71 -1 O MET A 63 N ILE A 40 SHEET 3 A 6 LEU A 90 VAL A 97 -1 O LEU A 90 N GLU A 71 SHEET 4 A 6 LEU A 200 SER A 206 -1 O GLU A 204 N LYS A 93 SHEET 5 A 6 GLU A 113 LEU A 119 -1 N VAL A 118 O VAL A 201 SHEET 6 A 6 PHE A 180 MET A 182 -1 O MET A 182 N GLU A 113 SHEET 1 B 5 SER A 169 ARG A 174 0 SHEET 2 B 5 GLU A 121 TYR A 126 -1 N VAL A 124 O VAL A 171 SHEET 3 B 5 HIS A 188 ARG A 191 -1 O ALA A 189 N PHE A 125 SHEET 4 B 5 PHE A 102 PHE A 107 -1 N CYS A 103 O PHE A 190 SHEET 5 B 5 THR A 233 PHE A 234 -1 O THR A 233 N PHE A 107 SHEET 1 C 2 ILE B 6 SER B 7 0 SHEET 2 C 2 ILE B 248 ALA B 249 1 O ALA B 249 N ILE B 6 SHEET 1 D 6 GLY B 39 VAL B 41 0 SHEET 2 D 6 VAL B 62 GLU B 71 -1 O MET B 63 N ILE B 40 SHEET 3 D 6 LEU B 90 VAL B 97 -1 O LEU B 90 N GLU B 71 SHEET 4 D 6 LEU B 200 SER B 206 -1 O LEU B 200 N VAL B 97 SHEET 5 D 6 GLU B 113 LEU B 119 -1 N VAL B 118 O VAL B 201 SHEET 6 D 6 PHE B 180 MET B 182 -1 O MET B 182 N GLU B 113 SHEET 1 E 5 SER B 169 ARG B 174 0 SHEET 2 E 5 GLU B 121 TYR B 126 -1 N MET B 122 O LEU B 173 SHEET 3 E 5 HIS B 188 ARG B 191 -1 O ALA B 189 N PHE B 125 SHEET 4 E 5 PHE B 102 PHE B 107 -1 N HIS B 106 O HIS B 188 SHEET 5 E 5 THR B 233 PHE B 234 -1 O THR B 233 N PHE B 107 LINK NE2 HIS A 106 MN MN A 401 1555 1555 2.25 LINK NE2 HIS A 108 MN MN A 401 1555 1555 2.16 LINK OE2 GLU A 113 MN MN A 401 1555 1555 2.33 LINK NE2 HIS A 188 MN MN A 401 1555 1555 2.33 LINK MN MN A 401 O HOH A 501 1555 1555 2.23 LINK MN MN A 401 O HOH A 502 1555 1555 2.27 LINK NE2 HIS B 106 MN MN B 401 1555 1555 2.29 LINK NE2 HIS B 108 MN MN B 401 1555 1555 2.12 LINK OE2 GLU B 113 MN MN B 401 1555 1555 2.21 LINK NE2 HIS B 188 MN MN B 401 1555 1555 2.43 LINK MN MN B 401 O HOH B 501 1555 1555 2.17 LINK MN MN B 401 O HOH B 502 1555 1555 2.37 SITE 1 AC1 6 HIS A 106 HIS A 108 GLU A 113 HIS A 188 SITE 2 AC1 6 HOH A 501 HOH A 502 SITE 1 AC2 6 HIS B 106 HIS B 108 GLU B 113 HIS B 188 SITE 2 AC2 6 HOH B 501 HOH B 502 CRYST1 76.520 89.070 152.580 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006554 0.00000