HEADER TRANSFERASE 18-JUN-14 3WWH TITLE CRYSTAL STRUCTURE OF THE FIRST R-STEREOSELECTIVE -TRANSAMINASE TITLE 2 IDENTIFIED FROM ARTHROBACTER SP. KNK168 (FERM-BP-5228) COMPND MOL_ID: 1; COMPND 2 MOLECULE: (R)-AMINE TRANSAMINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: R-STEREOSELECTIVE -TRANSAMINASE; COMPND 5 EC: 2.6.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. KNK168; SOURCE 3 ORGANISM_TAXID: 1042534; SOURCE 4 GENE: TAS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3) KEYWDS TRANSAMINASE, AMINE-PYRUVATE AMINOTRANSFERASE, PYRIDOXAL-5'- KEYWDS 2 PHOSPHATE, MULTI-DOMAIN PROTEIN (ALPHA AND BETA), FOLD CLASS IV PLP- KEYWDS 3 DEPENDENT ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.GUAN,J.OHTSUKA,M.OKAI,T.MIYAKAWA,T.MASE,Y.ZHI,N.ITO,Y.YASOHARA, AUTHOR 2 M.TANOKURA REVDAT 2 21-NOV-18 3WWH 1 JRNL REVDAT 1 12-AUG-15 3WWH 0 JRNL AUTH L.J.GUAN,J.OHTSUKA,M.OKAI,T.MIYAKAWA,T.MASE,Y.ZHI,F.HOU, JRNL AUTH 2 N.ITO,A.IWASAKI,Y.YASOHARA,M.TANOKURA JRNL TITL A NEW TARGET REGION FOR CHANGING THE SUBSTRATE SPECIFICITY JRNL TITL 2 OF AMINE TRANSAMINASES. JRNL REF SCI REP V. 5 10753 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26030619 JRNL DOI 10.1038/SREP10753 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 35839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2534 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.0810 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.0900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2566 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 324 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.542 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2649 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2462 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3619 ; 1.209 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5658 ; 0.711 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.500 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;30.316 ;23.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;10.616 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.318 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 406 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3010 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 330 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8840 5.1320 20.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.1111 T22: 0.1376 REMARK 3 T33: 0.0040 T12: -0.0095 REMARK 3 T13: -0.0020 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1799 L22: 0.0944 REMARK 3 L33: 0.3385 L12: 0.0173 REMARK 3 L13: 0.0649 L23: 0.1122 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: 0.0128 S13: -0.0027 REMARK 3 S21: 0.0075 S22: -0.0189 S23: -0.0146 REMARK 3 S31: -0.0260 S32: 0.0195 S33: 0.0003 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000096879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37725 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M BIS REMARK 280 -TRIS, 22% (W/V) PEG 3350, PH 6.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.31000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.31000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.94000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.31000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.31000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.94000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.31000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.31000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.94000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.31000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.31000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.94000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 804 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 786 O HOH A 786 2555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 63 44.97 37.80 REMARK 500 SER A 182 -58.81 -120.45 REMARK 500 ALA A 220 -94.54 -113.40 REMARK 500 ARG A 240 -77.82 -88.76 REMARK 500 SER A 299 -120.75 53.15 REMARK 500 SER A 321 117.71 -165.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WWI RELATED DB: PDB REMARK 900 RELATED ID: 3WWJ RELATED DB: PDB DBREF 3WWH A 1 330 UNP F7J696 F7J696_9MICC 1 330 SEQRES 1 A 330 MET ALA PHE SER ALA ASP THR SER GLU ILE VAL TYR THR SEQRES 2 A 330 HIS ASP THR GLY LEU ASP TYR ILE THR TYR SER ASP TYR SEQRES 3 A 330 GLU LEU ASP PRO ALA ASN PRO LEU ALA GLY GLY ALA ALA SEQRES 4 A 330 TRP ILE GLU GLY ALA PHE VAL PRO PRO SER GLU ALA ARG SEQRES 5 A 330 ILE SER ILE PHE ASP GLN GLY TYR LEU HIS SER ASP VAL SEQRES 6 A 330 THR TYR THR VAL PHE HIS VAL TRP ASN GLY ASN ALA PHE SEQRES 7 A 330 ARG LEU ASP ASP HIS ILE GLU ARG LEU PHE SER ASN ALA SEQRES 8 A 330 GLU SER MET ARG ILE ILE PRO PRO LEU THR GLN ASP GLU SEQRES 9 A 330 VAL LYS GLU ILE ALA LEU GLU LEU VAL ALA LYS THR GLU SEQRES 10 A 330 LEU ARG GLU ALA PHE VAL SER VAL SER ILE THR ARG GLY SEQRES 11 A 330 TYR SER SER THR PRO GLY GLU ARG ASP ILE THR LYS HIS SEQRES 12 A 330 ARG PRO GLN VAL TYR MET TYR ALA VAL PRO TYR GLN TRP SEQRES 13 A 330 ILE VAL PRO PHE ASP ARG ILE ARG ASP GLY VAL HIS ALA SEQRES 14 A 330 MET VAL ALA GLN SER VAL ARG ARG THR PRO ARG SER SER SEQRES 15 A 330 ILE ASP PRO GLN VAL LYS ASN PHE GLN TRP GLY ASP LEU SEQRES 16 A 330 ILE ARG ALA VAL GLN GLU THR HIS ASP ARG GLY PHE GLU SEQRES 17 A 330 ALA PRO LEU LEU LEU ASP GLY ASP GLY LEU LEU ALA GLU SEQRES 18 A 330 GLY SER GLY PHE ASN VAL VAL VAL ILE LYS ASP GLY VAL SEQRES 19 A 330 VAL ARG SER PRO GLY ARG ALA ALA LEU PRO GLY ILE THR SEQRES 20 A 330 ARG LYS THR VAL LEU GLU ILE ALA GLU SER LEU GLY HIS SEQRES 21 A 330 GLU ALA ILE LEU ALA ASP ILE THR LEU ALA GLU LEU LEU SEQRES 22 A 330 ASP ALA ASP GLU VAL LEU GLY CYS THR THR ALA GLY GLY SEQRES 23 A 330 VAL TRP PRO PHE VAL SER VAL ASP GLY ASN PRO ILE SER SEQRES 24 A 330 ASP GLY VAL PRO GLY PRO ILE THR GLN SER ILE ILE ARG SEQRES 25 A 330 ARG TYR TRP GLU LEU ASN VAL GLU SER SER SER LEU LEU SEQRES 26 A 330 THR PRO VAL GLN TYR HET PLP A 401 15 HET GOL A 402 6 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *324(H2 O) HELIX 1 1 ASP A 6 ILE A 10 5 5 HELIX 2 2 PRO A 47 ALA A 51 5 5 HELIX 3 3 ASP A 57 HIS A 62 1 6 HELIX 4 4 ARG A 79 MET A 94 1 16 HELIX 5 5 THR A 101 GLU A 117 1 17 HELIX 6 6 PRO A 159 GLY A 166 1 8 HELIX 7 7 TRP A 192 GLY A 206 1 15 HELIX 8 8 GLY A 245 LEU A 258 1 14 HELIX 9 9 THR A 268 ASP A 274 1 7 HELIX 10 10 GLY A 304 ASN A 318 1 15 SHEET 1 A 7 ALA A 44 VAL A 46 0 SHEET 2 A 7 ALA A 38 ILE A 41 -1 N ALA A 39 O VAL A 46 SHEET 3 A 7 ARG A 144 PRO A 153 -1 O ALA A 151 N ALA A 38 SHEET 4 A 7 ALA A 121 TYR A 131 -1 N SER A 126 O TYR A 148 SHEET 5 A 7 VAL A 65 TRP A 73 -1 N THR A 68 O VAL A 125 SHEET 6 A 7 ASN A 76 PHE A 78 -1 O ASN A 76 N TRP A 73 SHEET 7 A 7 LEU A 325 PRO A 327 -1 O THR A 326 N ALA A 77 SHEET 1 B 8 LEU A 219 GLY A 222 0 SHEET 2 B 8 ALA A 209 LEU A 213 -1 N LEU A 212 O GLU A 221 SHEET 3 B 8 VAL A 167 VAL A 171 1 N MET A 170 O LEU A 211 SHEET 4 B 8 GLY A 286 VAL A 293 1 O SER A 292 N ALA A 169 SHEET 5 B 8 GLU A 277 THR A 282 -1 N VAL A 278 O PHE A 290 SHEET 6 B 8 ASN A 226 LYS A 231 -1 N ILE A 230 O GLU A 277 SHEET 7 B 8 VAL A 234 PRO A 238 -1 O ARG A 236 N VAL A 229 SHEET 8 B 8 ALA A 262 ALA A 265 1 O ILE A 263 N VAL A 235 SHEET 1 C 5 LEU A 219 GLY A 222 0 SHEET 2 C 5 ALA A 209 LEU A 213 -1 N LEU A 212 O GLU A 221 SHEET 3 C 5 VAL A 167 VAL A 171 1 N MET A 170 O LEU A 211 SHEET 4 C 5 GLY A 286 VAL A 293 1 O SER A 292 N ALA A 169 SHEET 5 C 5 ASN A 296 PRO A 297 -1 O ASN A 296 N VAL A 293 LINK NZ LYS A 188 C4A PLP A 401 1555 1555 1.75 SITE 1 AC1 14 ARG A 86 LYS A 188 GLU A 221 PHE A 225 SITE 2 AC1 14 LEU A 243 GLY A 245 ILE A 246 THR A 247 SITE 3 AC1 14 THR A 282 THR A 283 GOL A 402 HOH A 503 SITE 4 AC1 14 HOH A 554 HOH A 706 SITE 1 AC2 7 HIS A 62 TYR A 67 VAL A 69 ARG A 138 SITE 2 AC2 7 LYS A 188 PLP A 401 HOH A 556 CRYST1 80.620 80.620 93.880 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012404 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010652 0.00000