HEADER LYASE 23-JUN-14 3WWO TITLE S-SELECTIVE HYDROXYNITRILE LYASE FROM BALIOSPERMUM MONTANUM (APO1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: (S)-HYDROXYNITRILE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BALIOSPERMUM MONTANUM; SOURCE 3 ORGANISM_TAXID: 316758; SOURCE 4 GENE: BMHNL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLDI KEYWDS ALPHA/BETA HYDROLASE FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKANO,M.DADASHIPOUR,Y.ASANO REVDAT 2 20-MAR-24 3WWO 1 REMARK SEQADV LINK REVDAT 1 22-OCT-14 3WWO 0 JRNL AUTH S.NAKANO,M.DADASHIPOUR,Y.ASANO JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF HYDROXYNITRILE LYASE JRNL TITL 2 FROM BALIOSPERMUM MONTANUM WITH CRYSTAL STRUCTURE, MOLECULAR JRNL TITL 3 DYNAMICS AND ENZYME KINETICS JRNL REF BIOCHIM.BIOPHYS.ACTA V.1844 2059 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 25220808 JRNL DOI 10.1016/J.BBAPAP.2014.09.004 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1214 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4078 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4210 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3942 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5730 ; 1.104 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9077 ; 0.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 511 ; 5.495 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;37.721 ;25.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 682 ;18.563 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;25.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4765 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 971 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 256 B 3 256 16145 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-14. REMARK 100 THE DEPOSITION ID IS D_1000096886. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18347 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 23.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 0.1M SODIUM ACETIC ACID, REMARK 280 0.02M CALCIUM CHLORIDE, PH 4.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.05800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.26450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.05800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.26450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 ASN A -23 REMARK 465 HIS A -22 REMARK 465 LYS A -21 REMARK 465 VAL A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 ILE A -13 REMARK 465 GLU A -12 REMARK 465 GLY A -11 REMARK 465 ARG A -10 REMARK 465 HIS A -9 REMARK 465 MET A -8 REMARK 465 GLU A -7 REMARK 465 LEU A -6 REMARK 465 GLY A -5 REMARK 465 THR A -4 REMARK 465 LEU A -3 REMARK 465 GLU A -2 REMARK 465 GLY A -1 REMARK 465 PHE A 0 REMARK 465 MET A 1 REMARK 465 ASP A 258 REMARK 465 LEU A 259 REMARK 465 LEU A 260 REMARK 465 ALA A 261 REMARK 465 VAL A 262 REMARK 465 ALA A 263 REMARK 465 MET B -24 REMARK 465 ASN B -23 REMARK 465 HIS B -22 REMARK 465 LYS B -21 REMARK 465 VAL B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 ILE B -13 REMARK 465 GLU B -12 REMARK 465 GLY B -11 REMARK 465 ARG B -10 REMARK 465 HIS B -9 REMARK 465 MET B -8 REMARK 465 GLU B -7 REMARK 465 LEU B -6 REMARK 465 GLY B -5 REMARK 465 THR B -4 REMARK 465 LEU B -3 REMARK 465 GLU B -2 REMARK 465 GLY B -1 REMARK 465 PHE B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 LEU B 260 REMARK 465 ALA B 261 REMARK 465 VAL B 262 REMARK 465 ALA B 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 259 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 410 O HOH A 417 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 111 NZ LYS A 241 3545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 13 -18.57 71.82 REMARK 500 HIS A 14 -166.52 -100.77 REMARK 500 GLU A 70 -147.25 46.72 REMARK 500 SER A 80 -129.92 48.18 REMARK 500 ASN A 104 48.67 38.15 REMARK 500 PRO A 108 -176.01 -67.63 REMARK 500 LYS A 129 -116.11 50.76 REMARK 500 PHE A 158 38.93 -95.30 REMARK 500 TYR A 222 84.42 -157.79 REMARK 500 LYS A 236 69.23 -100.42 REMARK 500 LYS A 241 59.02 -149.95 REMARK 500 CYS B 13 -19.60 71.71 REMARK 500 HIS B 14 -166.61 -100.95 REMARK 500 SER B 80 -129.23 48.88 REMARK 500 ASN B 104 47.53 39.10 REMARK 500 LYS B 129 -118.76 50.63 REMARK 500 PHE B 158 37.22 -94.58 REMARK 500 TYR B 222 85.27 -158.32 REMARK 500 LYS B 241 59.89 -151.49 REMARK 500 ASP B 258 36.98 74.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WWP RELATED DB: PDB DBREF 3WWO A 1 263 UNP D1MX73 D1MX73_9ROSI 1 263 DBREF 3WWO B 1 263 UNP D1MX73 D1MX73_9ROSI 1 263 SEQADV 3WWO MET A -24 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ASN A -23 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -22 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LYS A -21 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO VAL A -20 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -19 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -18 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -17 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -16 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -15 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -14 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ILE A -13 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU A -12 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY A -11 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ARG A -10 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS A -9 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO MET A -8 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU A -7 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LEU A -6 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY A -5 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO THR A -4 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LEU A -3 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU A -2 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY A -1 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO PHE A 0 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO MET B -24 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ASN B -23 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -22 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LYS B -21 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO VAL B -20 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -19 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -18 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -17 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -16 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -15 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -14 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ILE B -13 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU B -12 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY B -11 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO ARG B -10 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO HIS B -9 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO MET B -8 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU B -7 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LEU B -6 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY B -5 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO THR B -4 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO LEU B -3 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLU B -2 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO GLY B -1 UNP D1MX73 EXPRESSION TAG SEQADV 3WWO PHE B 0 UNP D1MX73 EXPRESSION TAG SEQRES 1 A 288 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 A 288 GLY ARG HIS MET GLU LEU GLY THR LEU GLU GLY PHE MET SEQRES 3 A 288 VAL SER ALA HIS PHE ILE LEU ILE HIS THR ILE CYS HIS SEQRES 4 A 288 GLY ALA TRP LEU TRP TYR LYS LEU ILE PRO LEU LEU GLN SEQRES 5 A 288 SER ALA GLY HIS ASN ALA THR ALA ILE ASP LEU VAL ALA SEQRES 6 A 288 SER GLY ILE ASP PRO ARG GLN LEU GLU GLN ILE GLY THR SEQRES 7 A 288 TRP GLU GLN TYR SER GLU PRO LEU PHE THR LEU ILE GLU SEQRES 8 A 288 SER ILE PRO GLU GLY LYS LYS VAL ILE LEU VAL GLY GLU SEQRES 9 A 288 SER GLY GLY GLY ILE ASN ILE ALA LEU ALA ALA GLU LYS SEQRES 10 A 288 TYR PRO GLU LYS VAL SER ALA LEU VAL PHE HIS ASN ALA SEQRES 11 A 288 LEU MET PRO ASP ILE ASP HIS SER PRO ALA PHE VAL TYR SEQRES 12 A 288 LYS LYS PHE SER GLU VAL PHE THR ASP TRP LYS ASP SER SEQRES 13 A 288 ILE PHE SER ASN TYR THR TYR GLY ASN ASP THR VAL THR SEQRES 14 A 288 ALA VAL GLU LEU GLY ASP ARG THR LEU ALA GLU ASN ILE SEQRES 15 A 288 PHE SER ASN SER PRO ILE GLU ASP VAL GLU LEU ALA LYS SEQRES 16 A 288 HIS LEU VAL ARG LYS GLY SER PHE PHE GLU GLN ASP LEU SEQRES 17 A 288 ASP THR LEU PRO ASN PHE THR SER GLU GLY TYR GLY SER SEQRES 18 A 288 ILE ARG ARG VAL TYR VAL TYR GLY GLU GLU ASP GLN ILE SEQRES 19 A 288 PHE SER ARG ASP PHE GLN LEU TRP GLN ILE ASN ASN TYR SEQRES 20 A 288 LYS PRO ASP LYS VAL TYR CYS VAL PRO SER ALA ASP HIS SEQRES 21 A 288 LYS ILE GLN ILE SER LYS VAL ASN GLU LEU ALA GLN ILE SEQRES 22 A 288 LEU GLN GLU VAL ALA ASN SER ALA SER ASP LEU LEU ALA SEQRES 23 A 288 VAL ALA SEQRES 1 B 288 MET ASN HIS LYS VAL HIS HIS HIS HIS HIS HIS ILE GLU SEQRES 2 B 288 GLY ARG HIS MET GLU LEU GLY THR LEU GLU GLY PHE MET SEQRES 3 B 288 VAL SER ALA HIS PHE ILE LEU ILE HIS THR ILE CYS HIS SEQRES 4 B 288 GLY ALA TRP LEU TRP TYR LYS LEU ILE PRO LEU LEU GLN SEQRES 5 B 288 SER ALA GLY HIS ASN ALA THR ALA ILE ASP LEU VAL ALA SEQRES 6 B 288 SER GLY ILE ASP PRO ARG GLN LEU GLU GLN ILE GLY THR SEQRES 7 B 288 TRP GLU GLN TYR SER GLU PRO LEU PHE THR LEU ILE GLU SEQRES 8 B 288 SER ILE PRO GLU GLY LYS LYS VAL ILE LEU VAL GLY GLU SEQRES 9 B 288 SER GLY GLY GLY ILE ASN ILE ALA LEU ALA ALA GLU LYS SEQRES 10 B 288 TYR PRO GLU LYS VAL SER ALA LEU VAL PHE HIS ASN ALA SEQRES 11 B 288 LEU MET PRO ASP ILE ASP HIS SER PRO ALA PHE VAL TYR SEQRES 12 B 288 LYS LYS PHE SER GLU VAL PHE THR ASP TRP LYS ASP SER SEQRES 13 B 288 ILE PHE SER ASN TYR THR TYR GLY ASN ASP THR VAL THR SEQRES 14 B 288 ALA VAL GLU LEU GLY ASP ARG THR LEU ALA GLU ASN ILE SEQRES 15 B 288 PHE SER ASN SER PRO ILE GLU ASP VAL GLU LEU ALA LYS SEQRES 16 B 288 HIS LEU VAL ARG LYS GLY SER PHE PHE GLU GLN ASP LEU SEQRES 17 B 288 ASP THR LEU PRO ASN PHE THR SER GLU GLY TYR GLY SER SEQRES 18 B 288 ILE ARG ARG VAL TYR VAL TYR GLY GLU GLU ASP GLN ILE SEQRES 19 B 288 PHE SER ARG ASP PHE GLN LEU TRP GLN ILE ASN ASN TYR SEQRES 20 B 288 LYS PRO ASP LYS VAL TYR CYS VAL PRO SER ALA ASP HIS SEQRES 21 B 288 LYS ILE GLN ILE SER LYS VAL ASN GLU LEU ALA GLN ILE SEQRES 22 B 288 LEU GLN GLU VAL ALA ASN SER ALA SER ASP LEU LEU ALA SEQRES 23 B 288 VAL ALA HET CA A 301 1 HET MPD A 302 8 HET MPD A 303 8 HET CA B 301 1 HET MPD B 302 8 HET MPD B 303 8 HETNAM CA CALCIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 MPD 4(C6 H14 O2) FORMUL 9 HOH *43(H2 O) HELIX 1 1 GLY A 15 TYR A 20 5 6 HELIX 2 2 LYS A 21 ALA A 29 1 9 HELIX 3 3 GLN A 47 ILE A 51 5 5 HELIX 4 4 THR A 53 SER A 58 1 6 HELIX 5 5 SER A 58 SER A 67 1 10 HELIX 6 6 GLY A 81 TYR A 93 1 13 HELIX 7 7 ALA A 115 PHE A 125 1 11 HELIX 8 8 GLY A 149 ASN A 156 1 8 HELIX 9 9 PRO A 162 HIS A 171 1 10 HELIX 10 10 PHE A 179 LEU A 186 1 8 HELIX 11 11 GLY A 193 ILE A 197 5 5 HELIX 12 12 SER A 211 TYR A 222 1 12 HELIX 13 13 LYS A 236 LYS A 241 1 6 HELIX 14 14 LYS A 241 SER A 257 1 17 HELIX 15 15 GLY B 15 TYR B 20 5 6 HELIX 16 16 LYS B 21 ALA B 29 1 9 HELIX 17 17 GLN B 47 ILE B 51 5 5 HELIX 18 18 THR B 53 SER B 58 1 6 HELIX 19 19 SER B 58 SER B 67 1 10 HELIX 20 20 GLY B 81 TYR B 93 1 13 HELIX 21 21 ALA B 115 PHE B 125 1 11 HELIX 22 22 GLY B 149 ASN B 156 1 8 HELIX 23 23 PRO B 162 HIS B 171 1 10 HELIX 24 24 PHE B 179 LEU B 186 1 8 HELIX 25 25 GLY B 193 ILE B 197 5 5 HELIX 26 26 SER B 211 TYR B 222 1 12 HELIX 27 27 LYS B 236 LYS B 241 1 6 HELIX 28 28 LYS B 241 SER B 257 1 17 SHEET 1 A 6 ASN A 32 ALA A 35 0 SHEET 2 A 6 HIS A 5 ILE A 9 1 N PHE A 6 O ASN A 32 SHEET 3 A 6 VAL A 74 GLU A 79 1 O VAL A 77 N ILE A 9 SHEET 4 A 6 VAL A 97 HIS A 103 1 O VAL A 101 N LEU A 76 SHEET 5 A 6 ARG A 198 GLY A 204 1 O VAL A 200 N PHE A 102 SHEET 6 A 6 LYS A 226 VAL A 230 1 O LYS A 226 N TYR A 201 SHEET 1 B 3 ILE A 132 TYR A 138 0 SHEET 2 B 3 ASP A 141 GLU A 147 -1 O VAL A 143 N TYR A 136 SHEET 3 B 3 GLY A 176 SER A 177 -1 O GLY A 176 N VAL A 146 SHEET 1 C 6 ASN B 32 ALA B 35 0 SHEET 2 C 6 HIS B 5 ILE B 9 1 N PHE B 6 O ASN B 32 SHEET 3 C 6 VAL B 74 GLU B 79 1 O VAL B 77 N ILE B 9 SHEET 4 C 6 VAL B 97 HIS B 103 1 O VAL B 101 N LEU B 76 SHEET 5 C 6 ARG B 198 GLY B 204 1 O ARG B 198 N LEU B 100 SHEET 6 C 6 LYS B 226 VAL B 230 1 O LYS B 226 N TYR B 201 SHEET 1 D 3 ILE B 132 TYR B 138 0 SHEET 2 D 3 ASP B 141 GLU B 147 -1 O VAL B 143 N TYR B 136 SHEET 3 D 3 GLY B 176 SER B 177 -1 O GLY B 176 N VAL B 146 LINK CA CA A 301 O2 MPD A 302 1555 1555 3.16 LINK CA CA B 301 O2 MPD B 302 1555 1555 2.54 SITE 1 AC1 5 THR A 11 SER A 80 HIS A 235 LYS A 236 SITE 2 AC1 5 MPD A 302 SITE 1 AC2 5 THR A 11 SER A 80 GLY A 81 ILE A 209 SITE 2 AC2 5 CA A 301 SITE 1 AC3 8 ILE A 12 TYR A 118 PHE A 133 THR A 144 SITE 2 AC3 8 ALA A 145 SER A 177 PHE A 178 HOH A 407 SITE 1 AC4 4 THR B 11 HIS B 235 LYS B 236 MPD B 302 SITE 1 AC5 7 THR B 11 ILE B 12 SER B 80 GLY B 81 SITE 2 AC5 7 LEU B 106 CA B 301 MPD B 303 SITE 1 AC6 6 TYR B 118 PHE B 133 THR B 144 ALA B 145 SITE 2 AC6 6 PHE B 178 MPD B 302 CRYST1 48.450 68.529 162.116 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020640 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006168 0.00000