data_3WWS # _entry.id 3WWS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3WWS RCSB RCSB096890 WWPDB D_1000096890 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3WWS _pdbx_database_status.recvd_initial_deposition_date 2014-06-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lee, S.J.' 1 'Song, J.' 2 'Yamashita, E.' 3 # _citation.id primary _citation.title 'Crystal structure of Serine/threonine-protein kinase 3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lee, S.J.' 1 primary 'Song, J.' 2 primary 'Yamashita, E.' 3 # _cell.entry_id 3WWS _cell.length_a 128.831 _cell.length_b 32.678 _cell.length_c 55.830 _cell.angle_alpha 90.00 _cell.angle_beta 109.63 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3WWS _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Serine/threonine-protein kinase 3' 6279.653 1 2.7.11.1 ? 'UNP residues 436-484' ? 2 polymer man 'Serine/threonine-protein kinase 3' 6137.498 3 2.7.11.1 ? 'UNP residues 436-484' ? 3 water nat water 18.015 36 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Mammalian STE20-like protein kinase 2, MST-2, STE20-like kinase MST2, Serine/threonine-protein kinase Krs-1, Serine/threonine-protein kinase 3 36kDa subunit, MST2/N, Serine/threonine-protein kinase 3 20kDa subunit, MST2/C ; 2 ;Mammalian STE20-like protein kinase 2, MST-2, STE20-like kinase MST2, Serine/threonine-protein kinase Krs-1, Serine/threonine-protein kinase 3 36kDa subunit, MST2/N, Serine/threonine-protein kinase 3 20kDa subunit, MST2/C ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'AADFDFLKNLSLEELQ(MSE)RLKALDP(MSE)(MSE)EREIEELRQRYTAKRQPILDA(MSE)DAK' AADFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK A ? 2 'polypeptide(L)' no yes 'DFDFLKNLSLEELQ(MSE)RLKALDP(MSE)(MSE)EREIEELRQRYTAKRQPILDA(MSE)DAK' DFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK D,C,B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ASP n 1 4 PHE n 1 5 ASP n 1 6 PHE n 1 7 LEU n 1 8 LYS n 1 9 ASN n 1 10 LEU n 1 11 SER n 1 12 LEU n 1 13 GLU n 1 14 GLU n 1 15 LEU n 1 16 GLN n 1 17 MSE n 1 18 ARG n 1 19 LEU n 1 20 LYS n 1 21 ALA n 1 22 LEU n 1 23 ASP n 1 24 PRO n 1 25 MSE n 1 26 MSE n 1 27 GLU n 1 28 ARG n 1 29 GLU n 1 30 ILE n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 ARG n 1 35 GLN n 1 36 ARG n 1 37 TYR n 1 38 THR n 1 39 ALA n 1 40 LYS n 1 41 ARG n 1 42 GLN n 1 43 PRO n 1 44 ILE n 1 45 LEU n 1 46 ASP n 1 47 ALA n 1 48 MSE n 1 49 ASP n 1 50 ALA n 1 51 LYS n 2 1 ASP n 2 2 PHE n 2 3 ASP n 2 4 PHE n 2 5 LEU n 2 6 LYS n 2 7 ASN n 2 8 LEU n 2 9 SER n 2 10 LEU n 2 11 GLU n 2 12 GLU n 2 13 LEU n 2 14 GLN n 2 15 MSE n 2 16 ARG n 2 17 LEU n 2 18 LYS n 2 19 ALA n 2 20 LEU n 2 21 ASP n 2 22 PRO n 2 23 MSE n 2 24 MSE n 2 25 GLU n 2 26 ARG n 2 27 GLU n 2 28 ILE n 2 29 GLU n 2 30 GLU n 2 31 LEU n 2 32 ARG n 2 33 GLN n 2 34 ARG n 2 35 TYR n 2 36 THR n 2 37 ALA n 2 38 LYS n 2 39 ARG n 2 40 GLN n 2 41 PRO n 2 42 ILE n 2 43 LEU n 2 44 ASP n 2 45 ALA n 2 46 MSE n 2 47 ASP n 2 48 ALA n 2 49 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'STK3, KRS1, MST2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human ? 'STK3, KRS1, MST2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP STK3_HUMAN Q13188 1 DFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK 436 ? 2 UNP STK3_HUMAN Q13188 2 DFDFLKNLSLEELQMRLKALDPMMEREIEELRQRYTAKRQPILDAMDAK 436 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3WWS A 3 ? 51 ? Q13188 436 ? 484 ? 436 484 2 2 3WWS D 1 ? 49 ? Q13188 436 ? 484 ? 436 484 3 2 3WWS C 1 ? 49 ? Q13188 436 ? 484 ? 436 484 4 2 3WWS B 1 ? 49 ? Q13188 436 ? 484 ? 436 484 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3WWS ALA A 1 ? UNP Q13188 ? ? 'EXPRESSION TAG' 434 1 1 3WWS ALA A 2 ? UNP Q13188 ? ? 'EXPRESSION TAG' 435 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 3WWS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl pH 7.4. 10%(m/v) PEG3350, 0.1M (NH4)3PO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date 2011-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL44XU' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL44XU _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 3WWS _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 60.67 _reflns.d_resolution_high 2 _reflns.number_obs 43771 _reflns.number_all 49626 _reflns.percent_possible_obs 58.55 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3WWS _refine.ls_number_reflns_obs 13815 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 60 _refine.ls_d_res_high 2.01 _refine.ls_percent_reflns_obs 96.83 _refine.ls_R_factor_obs 0.27108 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.26900 _refine.ls_R_factor_R_free 0.31141 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 736 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.918 _refine.correlation_coeff_Fo_to_Fc_free 0.895 _refine.B_iso_mean 41.248 _refine.aniso_B[1][1] -5.05 _refine.aniso_B[2][2] 3.65 _refine.aniso_B[3][3] 1.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.29 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.224 _refine.overall_SU_ML 0.144 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.634 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1645 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 1681 _refine_hist.d_res_high 2.01 _refine_hist.d_res_low 60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.008 0.022 ? 1661 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.100 2.017 ? 2214 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 4.604 5.000 ? 194 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 34.229 24.222 ? 90 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 18.233 15.000 ? 357 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 15.823 15.000 ? 20 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.078 0.200 ? 242 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.006 0.021 ? 1224 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.791 1.500 ? 992 ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1.550 2.000 ? 1583 ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 2.614 3.000 ? 669 ? 'X-RAY DIFFRACTION' r_scbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_it 4.180 4.500 ? 631 ? 'X-RAY DIFFRACTION' r_scangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_long_range_B_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.206 3.000 ? 1661 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.006 _refine_ls_shell.d_res_low 2.058 _refine_ls_shell.number_reflns_R_work 977 _refine_ls_shell.R_factor_R_work 0.355 _refine_ls_shell.percent_reflns_obs 94.07 _refine_ls_shell.R_factor_R_free 0.415 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3WWS _struct.title 'Crystal structure of Serine/threonine-protein kinase 3' _struct.pdbx_descriptor 'Serine/threonine-protein kinase 3 (E.C.2.7.11.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3WWS _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'WW45, Hippo pathway, Homodimerization, Heterodomerization, SARAH domain, SAV1, RASSF, LATS, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? LYS A 8 ? ASP A 436 LYS A 441 1 ? 6 HELX_P HELX_P2 2 SER A 11 ? ALA A 50 ? SER A 444 ALA A 483 1 ? 40 HELX_P HELX_P3 3 PHE B 2 ? LYS B 6 ? PHE D 437 LYS D 441 1 ? 5 HELX_P HELX_P4 4 SER B 9 ? ALA B 48 ? SER D 444 ALA D 483 1 ? 40 HELX_P HELX_P5 5 SER C 9 ? ALA C 48 ? SER C 444 ALA C 483 1 ? 40 HELX_P HELX_P6 6 SER D 9 ? LYS D 49 ? SER B 444 LYS B 484 1 ? 41 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLN 16 C ? ? ? 1_555 A MSE 17 N ? ? A GLN 449 A MSE 450 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 17 C ? ? ? 1_555 A ARG 18 N ? ? A MSE 450 A ARG 451 1_555 ? ? ? ? ? ? ? 1.333 ? covale3 covale ? ? A PRO 24 C ? ? ? 1_555 A MSE 25 N ? ? A PRO 457 A MSE 458 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale ? ? A MSE 25 C ? ? ? 1_555 A MSE 26 N ? ? A MSE 458 A MSE 459 1_555 ? ? ? ? ? ? ? 1.328 ? covale5 covale ? ? A MSE 26 C ? ? ? 1_555 A GLU 27 N ? ? A MSE 459 A GLU 460 1_555 ? ? ? ? ? ? ? 1.338 ? covale6 covale ? ? A ALA 47 C ? ? ? 1_555 A MSE 48 N ? ? A ALA 480 A MSE 481 1_555 ? ? ? ? ? ? ? 1.328 ? covale7 covale ? ? A MSE 48 C ? ? ? 1_555 A ASP 49 N ? ? A MSE 481 A ASP 482 1_555 ? ? ? ? ? ? ? 1.335 ? covale8 covale ? ? B GLN 14 C ? ? ? 1_555 B MSE 15 N ? ? D GLN 449 D MSE 450 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? B MSE 15 C ? ? ? 1_555 B ARG 16 N ? ? D MSE 450 D ARG 451 1_555 ? ? ? ? ? ? ? 1.335 ? covale10 covale ? ? B PRO 22 C ? ? ? 1_555 B MSE 23 N ? ? D PRO 457 D MSE 458 1_555 ? ? ? ? ? ? ? 1.336 ? covale11 covale ? ? B MSE 23 C ? ? ? 1_555 B MSE 24 N ? ? D MSE 458 D MSE 459 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? B MSE 24 C ? ? ? 1_555 B GLU 25 N ? ? D MSE 459 D GLU 460 1_555 ? ? ? ? ? ? ? 1.334 ? covale13 covale ? ? B ALA 45 C ? ? ? 1_555 B MSE 46 N ? ? D ALA 480 D MSE 481 1_555 ? ? ? ? ? ? ? 1.341 ? covale14 covale ? ? B MSE 46 C ? ? ? 1_555 B ASP 47 N ? ? D MSE 481 D ASP 482 1_555 ? ? ? ? ? ? ? 1.333 ? covale15 covale ? ? C GLN 14 C ? ? ? 1_555 C MSE 15 N ? ? C GLN 449 C MSE 450 1_555 ? ? ? ? ? ? ? 1.331 ? covale16 covale ? ? C MSE 15 C ? ? ? 1_555 C ARG 16 N ? ? C MSE 450 C ARG 451 1_555 ? ? ? ? ? ? ? 1.336 ? covale17 covale ? ? C PRO 22 C ? ? ? 1_555 C MSE 23 N ? ? C PRO 457 C MSE 458 1_555 ? ? ? ? ? ? ? 1.334 ? covale18 covale ? ? C MSE 23 C ? ? ? 1_555 C MSE 24 N ? ? C MSE 458 C MSE 459 1_555 ? ? ? ? ? ? ? 1.332 ? covale19 covale ? ? C MSE 24 C ? ? ? 1_555 C GLU 25 N ? ? C MSE 459 C GLU 460 1_555 ? ? ? ? ? ? ? 1.331 ? covale20 covale ? ? C ALA 45 C ? ? ? 1_555 C MSE 46 N ? ? C ALA 480 C MSE 481 1_555 ? ? ? ? ? ? ? 1.329 ? covale21 covale ? ? C MSE 46 C ? ? ? 1_555 C ASP 47 N ? ? C MSE 481 C ASP 482 1_555 ? ? ? ? ? ? ? 1.335 ? covale22 covale ? ? D GLN 14 C ? ? ? 1_555 D MSE 15 N ? ? B GLN 449 B MSE 450 1_555 ? ? ? ? ? ? ? 1.332 ? covale23 covale ? ? D MSE 15 C ? ? ? 1_555 D ARG 16 N ? ? B MSE 450 B ARG 451 1_555 ? ? ? ? ? ? ? 1.333 ? covale24 covale ? ? D PRO 22 C ? ? ? 1_555 D MSE 23 N ? ? B PRO 457 B MSE 458 1_555 ? ? ? ? ? ? ? 1.336 ? covale25 covale ? ? D MSE 23 C ? ? ? 1_555 D MSE 24 N ? ? B MSE 458 B MSE 459 1_555 ? ? ? ? ? ? ? 1.333 ? covale26 covale ? ? D MSE 24 C ? ? ? 1_555 D GLU 25 N ? ? B MSE 459 B GLU 460 1_555 ? ? ? ? ? ? ? 1.335 ? covale27 covale ? ? D ALA 45 C ? ? ? 1_555 D MSE 46 N ? ? B ALA 480 B MSE 481 1_555 ? ? ? ? ? ? ? 1.330 ? covale28 covale ? ? D MSE 46 C ? ? ? 1_555 D ASP 47 N ? ? B MSE 481 B ASP 482 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 3WWS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3WWS _atom_sites.fract_transf_matrix[1][1] 0.007762 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002768 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019016 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 434 434 ALA ALA A . n A 1 2 ALA 2 435 435 ALA ALA A . n A 1 3 ASP 3 436 436 ASP ASP A . n A 1 4 PHE 4 437 437 PHE PHE A . n A 1 5 ASP 5 438 438 ASP ASP A . n A 1 6 PHE 6 439 439 PHE PHE A . n A 1 7 LEU 7 440 440 LEU LEU A . n A 1 8 LYS 8 441 441 LYS LYS A . n A 1 9 ASN 9 442 442 ASN ASN A . n A 1 10 LEU 10 443 443 LEU LEU A . n A 1 11 SER 11 444 444 SER SER A . n A 1 12 LEU 12 445 445 LEU LEU A . n A 1 13 GLU 13 446 446 GLU GLU A . n A 1 14 GLU 14 447 447 GLU GLU A . n A 1 15 LEU 15 448 448 LEU LEU A . n A 1 16 GLN 16 449 449 GLN GLN A . n A 1 17 MSE 17 450 450 MSE MSE A . n A 1 18 ARG 18 451 451 ARG ARG A . n A 1 19 LEU 19 452 452 LEU LEU A . n A 1 20 LYS 20 453 453 LYS LYS A . n A 1 21 ALA 21 454 454 ALA ALA A . n A 1 22 LEU 22 455 455 LEU LEU A . n A 1 23 ASP 23 456 456 ASP ASP A . n A 1 24 PRO 24 457 457 PRO PRO A . n A 1 25 MSE 25 458 458 MSE MSE A . n A 1 26 MSE 26 459 459 MSE MSE A . n A 1 27 GLU 27 460 460 GLU GLU A . n A 1 28 ARG 28 461 461 ARG ARG A . n A 1 29 GLU 29 462 462 GLU GLU A . n A 1 30 ILE 30 463 463 ILE ILE A . n A 1 31 GLU 31 464 464 GLU GLU A . n A 1 32 GLU 32 465 465 GLU GLU A . n A 1 33 LEU 33 466 466 LEU LEU A . n A 1 34 ARG 34 467 467 ARG ARG A . n A 1 35 GLN 35 468 468 GLN GLN A . n A 1 36 ARG 36 469 469 ARG ARG A . n A 1 37 TYR 37 470 470 TYR TYR A . n A 1 38 THR 38 471 471 THR THR A . n A 1 39 ALA 39 472 472 ALA ALA A . n A 1 40 LYS 40 473 473 LYS LYS A . n A 1 41 ARG 41 474 474 ARG ARG A . n A 1 42 GLN 42 475 475 GLN GLN A . n A 1 43 PRO 43 476 476 PRO PRO A . n A 1 44 ILE 44 477 477 ILE ILE A . n A 1 45 LEU 45 478 478 LEU LEU A . n A 1 46 ASP 46 479 479 ASP ASP A . n A 1 47 ALA 47 480 480 ALA ALA A . n A 1 48 MSE 48 481 481 MSE MSE A . n A 1 49 ASP 49 482 482 ASP ASP A . n A 1 50 ALA 50 483 483 ALA ALA A . n A 1 51 LYS 51 484 484 LYS LYS A . n B 2 1 ASP 1 436 436 ASP ASP D . n B 2 2 PHE 2 437 437 PHE PHE D . n B 2 3 ASP 3 438 438 ASP ASP D . n B 2 4 PHE 4 439 439 PHE PHE D . n B 2 5 LEU 5 440 440 LEU LEU D . n B 2 6 LYS 6 441 441 LYS LYS D . n B 2 7 ASN 7 442 442 ASN ASN D . n B 2 8 LEU 8 443 443 LEU LEU D . n B 2 9 SER 9 444 444 SER SER D . n B 2 10 LEU 10 445 445 LEU LEU D . n B 2 11 GLU 11 446 446 GLU GLU D . n B 2 12 GLU 12 447 447 GLU GLU D . n B 2 13 LEU 13 448 448 LEU LEU D . n B 2 14 GLN 14 449 449 GLN GLN D . n B 2 15 MSE 15 450 450 MSE MSE D . n B 2 16 ARG 16 451 451 ARG ARG D . n B 2 17 LEU 17 452 452 LEU LEU D . n B 2 18 LYS 18 453 453 LYS LYS D . n B 2 19 ALA 19 454 454 ALA ALA D . n B 2 20 LEU 20 455 455 LEU LEU D . n B 2 21 ASP 21 456 456 ASP ASP D . n B 2 22 PRO 22 457 457 PRO PRO D . n B 2 23 MSE 23 458 458 MSE MSE D . n B 2 24 MSE 24 459 459 MSE MSE D . n B 2 25 GLU 25 460 460 GLU GLU D . n B 2 26 ARG 26 461 461 ARG ARG D . n B 2 27 GLU 27 462 462 GLU GLU D . n B 2 28 ILE 28 463 463 ILE ILE D . n B 2 29 GLU 29 464 464 GLU GLU D . n B 2 30 GLU 30 465 465 GLU GLU D . n B 2 31 LEU 31 466 466 LEU LEU D . n B 2 32 ARG 32 467 467 ARG ARG D . n B 2 33 GLN 33 468 468 GLN GLN D . n B 2 34 ARG 34 469 469 ARG ARG D . n B 2 35 TYR 35 470 470 TYR TYR D . n B 2 36 THR 36 471 471 THR THR D . n B 2 37 ALA 37 472 472 ALA ALA D . n B 2 38 LYS 38 473 473 LYS LYS D . n B 2 39 ARG 39 474 474 ARG ARG D . n B 2 40 GLN 40 475 475 GLN GLN D . n B 2 41 PRO 41 476 476 PRO PRO D . n B 2 42 ILE 42 477 477 ILE ILE D . n B 2 43 LEU 43 478 478 LEU LEU D . n B 2 44 ASP 44 479 479 ASP ASP D . n B 2 45 ALA 45 480 480 ALA ALA D . n B 2 46 MSE 46 481 481 MSE MSE D . n B 2 47 ASP 47 482 482 ASP ASP D . n B 2 48 ALA 48 483 483 ALA ALA D . n B 2 49 LYS 49 484 484 LYS LYS D . n C 2 1 ASP 1 436 436 ASP ASP C . n C 2 2 PHE 2 437 437 PHE PHE C . n C 2 3 ASP 3 438 438 ASP ASP C . n C 2 4 PHE 4 439 439 PHE PHE C . n C 2 5 LEU 5 440 440 LEU LEU C . n C 2 6 LYS 6 441 441 LYS LYS C . n C 2 7 ASN 7 442 442 ASN ASN C . n C 2 8 LEU 8 443 443 LEU LEU C . n C 2 9 SER 9 444 444 SER SER C . n C 2 10 LEU 10 445 445 LEU LEU C . n C 2 11 GLU 11 446 446 GLU GLU C . n C 2 12 GLU 12 447 447 GLU GLU C . n C 2 13 LEU 13 448 448 LEU LEU C . n C 2 14 GLN 14 449 449 GLN GLN C . n C 2 15 MSE 15 450 450 MSE MSE C . n C 2 16 ARG 16 451 451 ARG ARG C . n C 2 17 LEU 17 452 452 LEU LEU C . n C 2 18 LYS 18 453 453 LYS LYS C . n C 2 19 ALA 19 454 454 ALA ALA C . n C 2 20 LEU 20 455 455 LEU LEU C . n C 2 21 ASP 21 456 456 ASP ASP C . n C 2 22 PRO 22 457 457 PRO PRO C . n C 2 23 MSE 23 458 458 MSE MSE C . n C 2 24 MSE 24 459 459 MSE MSE C . n C 2 25 GLU 25 460 460 GLU GLU C . n C 2 26 ARG 26 461 461 ARG ARG C . n C 2 27 GLU 27 462 462 GLU GLU C . n C 2 28 ILE 28 463 463 ILE ILE C . n C 2 29 GLU 29 464 464 GLU GLU C . n C 2 30 GLU 30 465 465 GLU GLU C . n C 2 31 LEU 31 466 466 LEU LEU C . n C 2 32 ARG 32 467 467 ARG ARG C . n C 2 33 GLN 33 468 468 GLN GLN C . n C 2 34 ARG 34 469 469 ARG ARG C . n C 2 35 TYR 35 470 470 TYR TYR C . n C 2 36 THR 36 471 471 THR THR C . n C 2 37 ALA 37 472 472 ALA ALA C . n C 2 38 LYS 38 473 473 LYS LYS C . n C 2 39 ARG 39 474 474 ARG ARG C . n C 2 40 GLN 40 475 475 GLN GLN C . n C 2 41 PRO 41 476 476 PRO PRO C . n C 2 42 ILE 42 477 477 ILE ILE C . n C 2 43 LEU 43 478 478 LEU LEU C . n C 2 44 ASP 44 479 479 ASP ASP C . n C 2 45 ALA 45 480 480 ALA ALA C . n C 2 46 MSE 46 481 481 MSE MSE C . n C 2 47 ASP 47 482 482 ASP ASP C . n C 2 48 ALA 48 483 483 ALA ALA C . n C 2 49 LYS 49 484 484 LYS LYS C . n D 2 1 ASP 1 436 436 ASP ASP B . n D 2 2 PHE 2 437 437 PHE PHE B . n D 2 3 ASP 3 438 438 ASP ASP B . n D 2 4 PHE 4 439 439 PHE PHE B . n D 2 5 LEU 5 440 440 LEU LEU B . n D 2 6 LYS 6 441 441 LYS LYS B . n D 2 7 ASN 7 442 442 ASN ASN B . n D 2 8 LEU 8 443 443 LEU LEU B . n D 2 9 SER 9 444 444 SER SER B . n D 2 10 LEU 10 445 445 LEU LEU B . n D 2 11 GLU 11 446 446 GLU GLU B . n D 2 12 GLU 12 447 447 GLU GLU B . n D 2 13 LEU 13 448 448 LEU LEU B . n D 2 14 GLN 14 449 449 GLN GLN B . n D 2 15 MSE 15 450 450 MSE MSE B . n D 2 16 ARG 16 451 451 ARG ARG B . n D 2 17 LEU 17 452 452 LEU LEU B . n D 2 18 LYS 18 453 453 LYS LYS B . n D 2 19 ALA 19 454 454 ALA ALA B . n D 2 20 LEU 20 455 455 LEU LEU B . n D 2 21 ASP 21 456 456 ASP ASP B . n D 2 22 PRO 22 457 457 PRO PRO B . n D 2 23 MSE 23 458 458 MSE MSE B . n D 2 24 MSE 24 459 459 MSE MSE B . n D 2 25 GLU 25 460 460 GLU GLU B . n D 2 26 ARG 26 461 461 ARG ARG B . n D 2 27 GLU 27 462 462 GLU GLU B . n D 2 28 ILE 28 463 463 ILE ILE B . n D 2 29 GLU 29 464 464 GLU GLU B . n D 2 30 GLU 30 465 465 GLU GLU B . n D 2 31 LEU 31 466 466 LEU LEU B . n D 2 32 ARG 32 467 467 ARG ARG B . n D 2 33 GLN 33 468 468 GLN GLN B . n D 2 34 ARG 34 469 469 ARG ARG B . n D 2 35 TYR 35 470 470 TYR TYR B . n D 2 36 THR 36 471 471 THR THR B . n D 2 37 ALA 37 472 472 ALA ALA B . n D 2 38 LYS 38 473 473 LYS LYS B . n D 2 39 ARG 39 474 474 ARG ARG B . n D 2 40 GLN 40 475 475 GLN GLN B . n D 2 41 PRO 41 476 476 PRO PRO B . n D 2 42 ILE 42 477 477 ILE ILE B . n D 2 43 LEU 43 478 478 LEU LEU B . n D 2 44 ASP 44 479 479 ASP ASP B . n D 2 45 ALA 45 480 480 ALA ALA B . n D 2 46 MSE 46 481 481 MSE MSE B . n D 2 47 ASP 47 482 482 ASP ASP B . n D 2 48 ALA 48 483 483 ALA ALA B . n D 2 49 LYS 49 484 484 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 501 1 HOH HOH A . E 3 HOH 2 502 3 HOH HOH A . E 3 HOH 3 503 4 HOH HOH A . E 3 HOH 4 504 6 HOH HOH A . E 3 HOH 5 505 7 HOH HOH A . E 3 HOH 6 506 11 HOH HOH A . E 3 HOH 7 507 13 HOH HOH A . E 3 HOH 8 508 17 HOH HOH A . E 3 HOH 9 509 18 HOH HOH A . E 3 HOH 10 510 31 HOH HOH A . E 3 HOH 11 511 32 HOH HOH A . E 3 HOH 12 512 36 HOH HOH A . F 3 HOH 1 501 2 HOH HOH D . F 3 HOH 2 502 5 HOH HOH D . F 3 HOH 3 503 9 HOH HOH D . F 3 HOH 4 504 10 HOH HOH D . F 3 HOH 5 505 15 HOH HOH D . F 3 HOH 6 506 24 HOH HOH D . F 3 HOH 7 507 28 HOH HOH D . F 3 HOH 8 508 29 HOH HOH D . F 3 HOH 9 509 30 HOH HOH D . F 3 HOH 10 510 34 HOH HOH D . F 3 HOH 11 511 35 HOH HOH D . G 3 HOH 1 501 8 HOH HOH C . G 3 HOH 2 502 16 HOH HOH C . G 3 HOH 3 503 19 HOH HOH C . G 3 HOH 4 504 21 HOH HOH C . G 3 HOH 5 505 22 HOH HOH C . G 3 HOH 6 506 27 HOH HOH C . H 3 HOH 1 501 12 HOH HOH B . H 3 HOH 2 502 14 HOH HOH B . H 3 HOH 3 503 20 HOH HOH B . H 3 HOH 4 504 23 HOH HOH B . H 3 HOH 5 505 25 HOH HOH B . H 3 HOH 6 506 26 HOH HOH B . H 3 HOH 7 507 33 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 17 A MSE 450 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 458 ? MET SELENOMETHIONINE 3 A MSE 26 A MSE 459 ? MET SELENOMETHIONINE 4 A MSE 48 A MSE 481 ? MET SELENOMETHIONINE 5 B MSE 15 D MSE 450 ? MET SELENOMETHIONINE 6 B MSE 23 D MSE 458 ? MET SELENOMETHIONINE 7 B MSE 24 D MSE 459 ? MET SELENOMETHIONINE 8 B MSE 46 D MSE 481 ? MET SELENOMETHIONINE 9 C MSE 15 C MSE 450 ? MET SELENOMETHIONINE 10 C MSE 23 C MSE 458 ? MET SELENOMETHIONINE 11 C MSE 24 C MSE 459 ? MET SELENOMETHIONINE 12 C MSE 46 C MSE 481 ? MET SELENOMETHIONINE 13 D MSE 15 B MSE 450 ? MET SELENOMETHIONINE 14 D MSE 23 B MSE 458 ? MET SELENOMETHIONINE 15 D MSE 24 B MSE 459 ? MET SELENOMETHIONINE 16 D MSE 46 B MSE 481 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,E,H 2 1 B,C,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2910 ? 1 MORE -32 ? 1 'SSA (A^2)' 7200 ? 2 'ABSA (A^2)' 2760 ? 2 MORE -31 ? 2 'SSA (A^2)' 7490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-07-01 2 'Structure model' 1 1 2015-07-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Structure summary' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 13.7439 19.1518 44.7861 0.0928 0.0827 0.0769 0.0184 0.0016 -0.0079 4.5109 0.1127 0.6622 -0.2351 1.4343 -0.1883 0.1700 -0.0341 -0.1359 -0.0339 -0.2479 0.0471 0.0004 0.0056 0.0795 'X-RAY DIFFRACTION' 2 ? refined 53.6339 11.2479 32.0475 0.1023 0.0728 0.1198 0.0649 -0.0163 -0.0275 8.7025 1.2043 0.0895 -3.0245 0.6506 -0.2331 0.1622 -0.0644 -0.0978 0.0838 -0.3331 0.1375 -0.1417 0.0252 0.0334 'X-RAY DIFFRACTION' 3 ? refined 63.8925 16.2749 32.3427 0.0445 0.0558 0.1681 0.0461 0.0204 0.0109 10.5753 0.7647 0.2163 -2.7154 0.8028 -0.1733 0.1015 -0.0483 -0.0532 -0.0426 0.7065 -0.1917 -0.0653 0.0190 -0.0092 'X-RAY DIFFRACTION' 4 ? refined 3.3579 23.3057 49.5093 0.1012 0.1411 0.0655 0.0324 0.0117 -0.0589 13.0088 0.1258 0.5689 0.3453 2.6157 0.0185 -0.0160 -0.0079 0.0239 -0.7156 0.3174 -0.0013 0.0603 -0.0401 -0.1367 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 434 A 484 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 D 436 D 484 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 C 436 C 484 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 B 436 B 484 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' AutoSol ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing AutoSol ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 435 ? ? 79.84 -11.40 2 1 ASN B 442 ? ? -76.73 23.41 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D GLN 449 ? CG ? B GLN 14 CG 2 1 Y 1 D GLN 449 ? CD ? B GLN 14 CD 3 1 Y 1 D GLN 449 ? OE1 ? B GLN 14 OE1 4 1 Y 1 D GLN 449 ? NE2 ? B GLN 14 NE2 5 1 Y 1 C ALA 483 ? O ? C ALA 48 O 6 1 Y 1 C LYS 484 ? CG ? C LYS 49 CG 7 1 Y 1 C LYS 484 ? CD ? C LYS 49 CD 8 1 Y 1 C LYS 484 ? CE ? C LYS 49 CE 9 1 Y 1 C LYS 484 ? NZ ? C LYS 49 NZ 10 1 Y 1 B ASP 436 ? CG ? D ASP 1 CG 11 1 Y 1 B ASP 436 ? OD1 ? D ASP 1 OD1 12 1 Y 1 B ASP 436 ? OD2 ? D ASP 1 OD2 13 1 Y 1 B LYS 484 ? O ? D LYS 49 O 14 1 Y 1 B LYS 484 ? CG ? D LYS 49 CG 15 1 Y 1 B LYS 484 ? CD ? D LYS 49 CD 16 1 Y 1 B LYS 484 ? CE ? D LYS 49 CE 17 1 Y 1 B LYS 484 ? NZ ? D LYS 49 NZ # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #