HEADER OXIDOREDUCTASE 04-AUG-14 3WXO TITLE CRYSTAL STRUCTURE OF ISONIAZID BOUND KATG CATALASE PEROXIDASE FROM TITLE 2 SYNECHOCOCCUS ELONGATUS PCC7942 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE-PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CP, PEROXIDASE/CATALASE; COMPND 5 EC: 1.11.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: KATG, SYNPCC7942_1656; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEROXIDASE FAMILY, PEROXIDASE, CATALASE SUBFAMILY, OXIDOREDUCTASE KEYWDS 2 PEROXIDASE, HEME B FE, CROSS-LINK, COVALENT TRP-TYR-MET ADDUCT, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.WADA,T.TADA,S.KAMACHI REVDAT 2 20-MAR-24 3WXO 1 REMARK LINK REVDAT 1 21-JAN-15 3WXO 0 JRNL AUTH S.KAMACHI,K.HIRABAYASHI,M.TAMOI,S.SHIGEOKA,T.TADA,K.WADA JRNL TITL THE CRYSTAL STRUCTURE OF ISONIAZID-BOUND KATG JRNL TITL 2 CATALASE-PEROXIDASE FROM SYNECHOCOCCUS ELONGATUS PCC7942. JRNL REF FEBS J. V. 282 54 2015 JRNL REFN ISSN 1742-464X JRNL PMID 25303560 JRNL DOI 10.1111/FEBS.13102 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 65956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3356 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.2370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5824 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5356 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7944 ; 1.950 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12287 ; 0.961 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 713 ; 6.463 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 285 ;34.629 ;24.175 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 905 ;16.113 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 824 ; 0.137 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6769 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1416 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2843 ; 3.431 ; 3.548 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2842 ; 3.430 ; 3.546 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3553 ; 4.600 ; 5.303 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES REMARK 4 REMARK 4 3WXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000096922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69586 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PH6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.44550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.32700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.32700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.72275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.32700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.32700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.16825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.32700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.32700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.72275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.32700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.32700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 152.16825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.44550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -202.89100 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CH2 TRP A 94 CE2 TYR A 222 1.74 REMARK 500 CE1 TYR A 222 SD MET A 248 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 13 C GLY A 13 O 0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 242 CD - NE - CZ ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 242 NE - CZ - NH1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 242 NE - CZ - NH2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG A 327 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 327 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 394 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 412 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 412 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 MET A 414 CG - SD - CE ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 419 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 502 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 576 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 576 NE - CZ - NH1 ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 576 NE - CZ - NH2 ANGL. DEV. = -11.0 DEGREES REMARK 500 LEU A 608 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 THR A 628 CB - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 72.37 -112.42 REMARK 500 TRP A 78 79.04 -155.32 REMARK 500 ARG A 207 56.54 39.98 REMARK 500 TYR A 222 -72.81 -127.01 REMARK 500 ASP A 229 27.97 48.89 REMARK 500 ASP A 233 97.02 -172.27 REMARK 500 THR A 307 -87.71 -130.63 REMARK 500 ASP A 322 -169.74 -166.56 REMARK 500 ARG A 367 -135.56 -121.35 REMARK 500 ALA A 652 57.18 -143.16 REMARK 500 SER A 680 -52.05 -128.35 REMARK 500 ARG A 716 54.43 -92.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 15 THR A 16 -149.38 REMARK 500 GLU A 210 ASN A 211 -139.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 242 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 807 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 40 O REMARK 620 2 ASN A 43 O 92.6 REMARK 620 3 HOH A 953 O 175.2 86.5 REMARK 620 4 HOH A1024 O 94.3 91.9 81.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 805 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 105 O REMARK 620 2 GLY A 107 O 99.8 REMARK 620 3 SER A 476 O 88.2 159.6 REMARK 620 4 HOH A 955 O 165.9 77.4 90.3 REMARK 620 5 HOH A1031 O 103.2 99.6 96.7 90.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 263 NE2 REMARK 620 2 HEM A 801 NA 93.0 REMARK 620 3 HEM A 801 NB 90.2 92.4 REMARK 620 4 HEM A 801 NC 89.0 178.0 87.2 REMARK 620 5 HEM A 801 ND 91.2 87.7 178.7 92.6 REMARK 620 6 HOH A1387 O 168.8 77.7 84.1 100.3 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 806 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 264 O REMARK 620 2 THR A 315 OG1 77.5 REMARK 620 3 HIS A 317 O 120.1 81.2 REMARK 620 4 GLN A 320 O 94.8 163.7 90.6 REMARK 620 5 ASP A 322 OD2 153.1 108.9 86.7 84.5 REMARK 620 6 ASP A 322 OD1 105.1 106.6 134.6 89.2 48.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 808 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 695 O REMARK 620 2 ASN A 696 OD1 78.9 REMARK 620 3 HOH A1015 O 73.9 97.2 REMARK 620 4 HOH A1176 O 90.0 103.7 150.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIZ A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIZ A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NIZ A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 808 DBREF 3WXO A 11 720 UNP Q31MN3 KATG_SYNE7 11 720 SEQRES 1 A 710 MET HIS GLY GLY ALA THR THR VAL ASN ILE SER THR ALA SEQRES 2 A 710 GLU TRP TRP PRO LYS ALA LEU ASN LEU ASP ILE LEU SER SEQRES 3 A 710 GLN HIS ASP ARG LYS THR ASN PRO MET GLY PRO ASP PHE SEQRES 4 A 710 ASN TYR GLN GLU GLU VAL LYS LYS LEU ASP VAL ALA ALA SEQRES 5 A 710 LEU LYS GLN ASP LEU GLN ALA LEU MET THR ASP SER GLN SEQRES 6 A 710 ASP TRP TRP PRO ALA ASP TRP GLY HIS TYR GLY GLY LEU SEQRES 7 A 710 MET ILE ARG LEU THR TRP HIS ALA ALA GLY THR TYR ARG SEQRES 8 A 710 ILE ALA ASP GLY ARG GLY GLY ALA GLY THR GLY ASN GLN SEQRES 9 A 710 ARG PHE ALA PRO LEU ASN SER TRP PRO ASP ASN THR ASN SEQRES 10 A 710 LEU ASP LYS ALA ARG ARG LEU LEU TRP PRO ILE LYS GLN SEQRES 11 A 710 LYS TYR GLY ASN LYS LEU SER TRP ALA ASP LEU ILE ALA SEQRES 12 A 710 TYR ALA GLY THR ILE ALA TYR GLU SER MET GLY LEU LYS SEQRES 13 A 710 THR PHE GLY PHE ALA PHE GLY ARG GLU ASP ILE TRP HIS SEQRES 14 A 710 PRO GLU LYS ASP ILE TYR TRP GLY PRO GLU LYS GLU TRP SEQRES 15 A 710 VAL PRO PRO SER THR ASN PRO ASN SER ARG TYR THR GLY SEQRES 16 A 710 ASP ARG GLU LEU GLU ASN PRO LEU ALA ALA VAL THR MET SEQRES 17 A 710 GLY LEU ILE TYR VAL ASN PRO GLU GLY VAL ASP GLY ASN SEQRES 18 A 710 PRO ASP PRO LEU LYS THR ALA HIS ASP VAL ARG VAL THR SEQRES 19 A 710 PHE ALA ARG MET ALA MET ASN ASP GLU GLU THR VAL ALA SEQRES 20 A 710 LEU THR ALA GLY GLY HIS THR VAL GLY LYS CYS HIS GLY SEQRES 21 A 710 ASN GLY ASN ALA ALA LEU LEU GLY PRO GLU PRO GLU GLY SEQRES 22 A 710 ALA ASP VAL GLU ASP GLN GLY LEU GLY TRP ILE ASN LYS SEQRES 23 A 710 THR GLN SER GLY ILE GLY ARG ASN ALA VAL THR SER GLY SEQRES 24 A 710 LEU GLU GLY ALA TRP THR PRO HIS PRO THR GLN TRP ASP SEQRES 25 A 710 ASN GLY TYR PHE ARG MET LEU LEU ASN TYR ASP TRP GLU SEQRES 26 A 710 LEU LYS LYS SER PRO ALA GLY ALA TRP GLN TRP GLU PRO SEQRES 27 A 710 ILE ASN PRO ARG GLU GLU ASP LEU PRO VAL ASP VAL GLU SEQRES 28 A 710 ASP PRO SER ILE ARG ARG ASN LEU VAL MET THR ASP ALA SEQRES 29 A 710 ASP MET ALA MET LYS MET ASP PRO GLU TYR ARG LYS ILE SEQRES 30 A 710 SER GLU ARG PHE TYR GLN ASP PRO ALA TYR PHE ALA ASP SEQRES 31 A 710 VAL PHE ALA ARG ALA TRP PHE LYS LEU THR HIS ARG ASP SEQRES 32 A 710 MET GLY PRO LYS ALA ARG TYR ILE GLY PRO ASP VAL PRO SEQRES 33 A 710 GLN GLU ASP LEU ILE TRP GLN ASP PRO ILE PRO ALA GLY SEQRES 34 A 710 ASN ARG ASN TYR ASP VAL GLN ALA VAL LYS ASP ARG ILE SEQRES 35 A 710 ALA ALA SER GLY LEU SER ILE SER GLU LEU VAL SER THR SEQRES 36 A 710 ALA TRP ASP SER ALA ARG THR TYR ARG ASN SER ASP LYS SEQRES 37 A 710 ARG GLY GLY ALA ASN GLY ALA ARG ILE ARG LEU ALA PRO SEQRES 38 A 710 GLN LYS ASP TRP GLU GLY ASN GLU PRO ASP ARG LEU ALA SEQRES 39 A 710 LYS VAL LEU ALA VAL LEU GLU GLY ILE ALA ALA ALA THR SEQRES 40 A 710 GLY ALA SER VAL ALA ASP VAL ILE VAL LEU ALA GLY ASN SEQRES 41 A 710 VAL GLY VAL GLU GLN ALA ALA ARG ALA ALA GLY VAL GLU SEQRES 42 A 710 ILE VAL LEU PRO PHE ALA PRO GLY ARG GLY ASP ALA THR SEQRES 43 A 710 ALA GLU GLN THR ASP THR GLU SER PHE ALA VAL LEU GLU SEQRES 44 A 710 PRO ILE HIS ASP GLY TYR ARG ASN TRP LEU LYS GLN ASP SEQRES 45 A 710 TYR ALA ALA THR PRO GLU GLU LEU LEU LEU ASP ARG THR SEQRES 46 A 710 GLN LEU LEU GLY LEU THR ALA PRO GLU MET THR VAL LEU SEQRES 47 A 710 ILE GLY GLY LEU ARG VAL LEU GLY THR ASN HIS GLY GLY SEQRES 48 A 710 THR LYS HIS GLY VAL PHE THR ASP ARG GLU GLY VAL LEU SEQRES 49 A 710 THR ASN ASP PHE PHE VAL ASN LEU THR ASP MET ASN TYR SEQRES 50 A 710 LEU TRP LYS PRO ALA GLY LYS ASN LEU TYR GLU ILE CYS SEQRES 51 A 710 ASP ARG LYS THR ASN GLN VAL LYS TRP THR ALA THR ARG SEQRES 52 A 710 VAL ASP LEU VAL PHE GLY SER ASN SER ILE LEU ARG ALA SEQRES 53 A 710 TYR SER GLU LEU TYR ALA GLN ASP ASP ASN LYS GLU LYS SEQRES 54 A 710 PHE VAL ARG ASP PHE VAL ALA ALA TRP THR LYS VAL MET SEQRES 55 A 710 ASN ALA ASP ARG PHE ASP LEU ASP HET HEM A 801 43 HET NIZ A 802 10 HET NIZ A 803 10 HET NIZ A 804 10 HET NA A 805 1 HET NA A 806 1 HET NA A 807 1 HET NA A 808 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM NIZ PYRIDINE-4-CARBOHYDRAZIDE HETNAM NA SODIUM ION HETSYN HEM HEME HETSYN NIZ ISONICOTINIC ACID HYDRAZID FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 NIZ 3(C6 H7 N3 O) FORMUL 6 NA 4(NA 1+) FORMUL 10 HOH *487(H2 O) HELIX 1 1 SER A 21 TRP A 26 1 6 HELIX 2 2 ASN A 31 SER A 36 5 6 HELIX 3 3 ASN A 50 LYS A 56 1 7 HELIX 4 4 ASP A 59 THR A 72 1 14 HELIX 5 5 ALA A 80 HIS A 84 5 5 HELIX 6 6 TYR A 85 GLY A 98 1 14 HELIX 7 7 GLY A 112 PHE A 116 5 5 HELIX 8 8 PRO A 118 THR A 126 5 9 HELIX 9 9 ASN A 127 LEU A 135 1 9 HELIX 10 10 LEU A 135 GLY A 143 1 9 HELIX 11 11 ASN A 144 LEU A 146 5 3 HELIX 12 12 SER A 147 GLY A 164 1 18 HELIX 13 13 GLY A 227 ASN A 231 5 5 HELIX 14 14 ASP A 233 MET A 248 1 16 HELIX 15 15 ASN A 251 THR A 264 1 14 HELIX 16 16 ASN A 273 LEU A 277 5 5 HELIX 17 17 GLU A 280 ALA A 284 5 5 HELIX 18 18 ASP A 285 GLN A 289 5 5 HELIX 19 19 ILE A 301 ALA A 305 5 5 HELIX 20 20 ASN A 323 TYR A 332 1 10 HELIX 21 21 ARG A 352 LEU A 356 5 5 HELIX 22 22 THR A 372 ASP A 381 1 10 HELIX 23 23 ASP A 381 ASP A 394 1 14 HELIX 24 24 ASP A 394 ARG A 412 1 19 HELIX 25 25 PRO A 416 TYR A 420 5 5 HELIX 26 26 LEU A 430 ASP A 434 5 5 HELIX 27 27 ASP A 444 SER A 455 1 12 HELIX 28 28 SER A 458 ARG A 471 1 14 HELIX 29 29 ALA A 485 LEU A 489 5 5 HELIX 30 30 PRO A 491 ASN A 498 5 8 HELIX 31 31 GLU A 499 GLY A 518 1 20 HELIX 32 32 SER A 520 ALA A 540 1 21 HELIX 33 33 THR A 556 THR A 560 5 5 HELIX 34 34 THR A 562 GLU A 569 5 8 HELIX 35 35 GLY A 574 ASN A 577 5 4 HELIX 36 36 THR A 586 GLY A 599 1 14 HELIX 37 37 THR A 601 GLY A 616 1 16 HELIX 38 38 ASN A 618 THR A 622 5 5 HELIX 39 39 ASN A 636 THR A 643 1 8 HELIX 40 40 THR A 672 VAL A 677 1 6 HELIX 41 41 PHE A 678 SER A 680 5 3 HELIX 42 42 ASN A 681 GLN A 693 1 13 HELIX 43 43 ASN A 696 ASN A 713 1 18 SHEET 1 A 2 TYR A 203 THR A 204 0 SHEET 2 A 2 GLU A 208 LEU A 209 -1 O GLU A 208 N THR A 204 SHEET 1 B 2 LYS A 267 CYS A 268 0 SHEET 2 B 2 GLY A 312 ALA A 313 -1 O GLY A 312 N CYS A 268 SHEET 1 C 2 TRP A 334 LYS A 338 0 SHEET 2 C 2 TRP A 344 PRO A 348 -1 O GLU A 347 N GLU A 335 SHEET 1 D 2 HIS A 572 ASP A 573 0 SHEET 2 D 2 TRP A 578 LEU A 579 -1 O TRP A 578 N ASP A 573 SHEET 1 E 3 TYR A 647 PRO A 651 0 SHEET 2 E 3 TYR A 657 ASP A 661 -1 O CYS A 660 N LEU A 648 SHEET 3 E 3 VAL A 667 ALA A 671 -1 O LYS A 668 N ILE A 659 LINK O ARG A 40 NA NA A 807 1555 1555 2.42 LINK O ASN A 43 NA NA A 807 1555 1555 2.34 LINK O GLY A 105 NA NA A 805 1555 1555 2.35 LINK O GLY A 107 NA NA A 805 1555 1555 2.34 LINK NE2 HIS A 263 FE HEM A 801 1555 1555 2.16 LINK O THR A 264 NA NA A 806 1555 1555 2.38 LINK OG1 THR A 315 NA NA A 806 1555 1555 2.77 LINK O HIS A 317 NA NA A 806 1555 1555 2.32 LINK O GLN A 320 NA NA A 806 1555 1555 2.38 LINK OD2 ASP A 322 NA NA A 806 1555 1555 2.55 LINK OD1 ASP A 322 NA NA A 806 1555 1555 2.85 LINK O SER A 476 NA NA A 805 1555 1555 2.31 LINK O ASP A 695 NA NA A 808 1555 1555 2.45 LINK OD1 ASN A 696 NA NA A 808 1555 1555 2.51 LINK FE HEM A 801 O HOH A1387 1555 1555 2.75 LINK NA NA A 805 O HOH A 955 1555 1555 2.33 LINK NA NA A 805 O HOH A1031 1555 1555 2.55 LINK NA NA A 807 O HOH A 953 1555 1555 2.45 LINK NA NA A 807 O HOH A1024 1555 1555 3.13 LINK NA NA A 808 O HOH A1015 1555 1555 2.41 LINK NA NA A 808 O HOH A1176 1555 1555 2.40 CISPEP 1 ALA A 117 PRO A 118 0 -7.93 CISPEP 2 ALA A 490 PRO A 491 0 -7.10 SITE 1 AC1 20 GLY A 87 LEU A 88 ILE A 90 TRP A 94 SITE 2 AC1 20 PHE A 245 LEU A 258 THR A 259 GLY A 262 SITE 3 AC1 20 HIS A 263 GLY A 266 LYS A 267 CYS A 268 SITE 4 AC1 20 HIS A 269 THR A 307 SER A 308 TRP A 314 SITE 5 AC1 20 HOH A 905 HOH A 913 HOH A 926 HOH A1387 SITE 1 AC2 8 TRP A 77 TRP A 78 LYS A 130 ILE A 294 SITE 2 AC2 8 ASN A 295 GLY A 300 ARG A 662 HOH A1373 SITE 1 AC3 6 PRO A 123 ASP A 124 VAL A 193 THR A 307 SITE 2 AC3 6 SER A 308 HOH A1321 SITE 1 AC4 3 ASN A 271 ARG A 367 HOH A1350 SITE 1 AC5 6 GLY A 105 ARG A 106 GLY A 107 SER A 476 SITE 2 AC5 6 HOH A 955 HOH A1031 SITE 1 AC6 5 THR A 264 THR A 315 HIS A 317 GLN A 320 SITE 2 AC6 5 ASP A 322 SITE 1 AC7 3 ARG A 40 ASN A 43 HOH A 953 SITE 1 AC8 5 ASN A 144 ASP A 695 ASN A 696 HOH A1015 SITE 2 AC8 5 HOH A1176 CRYST1 108.654 108.654 202.891 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009204 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004929 0.00000