HEADER HYDROLASE 18-AUG-14 3WY1 TITLE CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOMONAS SP. H11; SOURCE 3 ORGANISM_TAXID: 1076127; SOURCE 4 GENE: AGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG-CTS KEYWDS ALPHA-GLUCOSIDASE, TIM BARREL, GLUCOSIDASE, CARBOHYDRATE/SUGAR KEYWDS 2 BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SHEN,Z.GAI,K.KATO,M.YAO REVDAT 4 08-NOV-23 3WY1 1 REMARK LINK REVDAT 3 21-MAR-18 3WY1 1 JRNL REVDAT 2 22-NOV-17 3WY1 1 REMARK REVDAT 1 10-JUN-15 3WY1 0 JRNL AUTH X.SHEN,W.SABURI,Z.GAI,K.KATO,T.OJIMA-KATO,J.YU,K.KOMODA, JRNL AUTH 2 Y.KIDO,H.MATSUI,H.MORI,M.YAO JRNL TITL STRUCTURAL ANALYSIS OF THE ALPHA-GLUCOSIDASE HAG PROVIDES JRNL TITL 2 NEW INSIGHTS INTO SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 3 MECHANISM JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 1382 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26057678 JRNL DOI 10.1107/S139900471500721X REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1391) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 71076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5020 - 6.2810 0.99 2918 153 0.1643 0.1857 REMARK 3 2 6.2810 - 4.9876 1.00 2774 146 0.1503 0.1858 REMARK 3 3 4.9876 - 4.3577 0.99 2749 145 0.1346 0.1533 REMARK 3 4 4.3577 - 3.9596 1.00 2736 144 0.1384 0.1788 REMARK 3 5 3.9596 - 3.6759 1.00 2738 144 0.1582 0.1849 REMARK 3 6 3.6759 - 3.4593 1.00 2699 142 0.1707 0.1857 REMARK 3 7 3.4593 - 3.2861 1.00 2714 142 0.1849 0.2142 REMARK 3 8 3.2861 - 3.1431 1.00 2697 142 0.1902 0.2350 REMARK 3 9 3.1431 - 3.0221 1.00 2695 142 0.2006 0.2378 REMARK 3 10 3.0221 - 2.9178 1.00 2695 142 0.2036 0.2294 REMARK 3 11 2.9178 - 2.8266 1.00 2704 142 0.1996 0.2645 REMARK 3 12 2.8266 - 2.7458 1.00 2669 140 0.2052 0.2466 REMARK 3 13 2.7458 - 2.6736 1.00 2695 142 0.1937 0.2519 REMARK 3 14 2.6736 - 2.6083 1.00 2684 142 0.2040 0.2309 REMARK 3 15 2.6083 - 2.5490 1.00 2670 140 0.2023 0.2647 REMARK 3 16 2.5490 - 2.4948 1.00 2681 141 0.2112 0.2790 REMARK 3 17 2.4948 - 2.4449 1.00 2652 139 0.2194 0.2544 REMARK 3 18 2.4449 - 2.3988 1.00 2676 141 0.2062 0.2585 REMARK 3 19 2.3988 - 2.3559 1.00 2687 141 0.2243 0.2906 REMARK 3 20 2.3559 - 2.3160 1.00 2657 140 0.2147 0.2645 REMARK 3 21 2.3160 - 2.2786 1.00 2679 141 0.2342 0.2941 REMARK 3 22 2.2786 - 2.2436 1.00 2627 138 0.2284 0.2882 REMARK 3 23 2.2436 - 2.2106 1.00 2691 142 0.2532 0.2659 REMARK 3 24 2.2106 - 2.1795 1.00 2649 140 0.2458 0.2861 REMARK 3 25 2.1795 - 2.1500 1.00 2688 141 0.2692 0.3014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8889 REMARK 3 ANGLE : 1.131 12121 REMARK 3 CHIRALITY : 0.076 1258 REMARK 3 PLANARITY : 0.005 1614 REMARK 3 DIHEDRAL : 12.979 3206 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 5105 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-AUG-14. REMARK 100 THE DEPOSITION ID IS D_1000096935. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71192 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 99.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1M53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYACRYLIC ACID 5100 SODIUM SALT, REMARK 280 0.1M HEPES, 0.02M MAGNESIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.27000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.98500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.79500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.98500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.79500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 812 O HOH A 843 1.82 REMARK 500 O HOH B 850 O HOH B 977 1.83 REMARK 500 O HOH A 1009 O HOH A 1031 1.86 REMARK 500 O HOH B 849 O HOH B 865 1.89 REMARK 500 OE1 GLU B 279 O HOH B 925 1.91 REMARK 500 N VAL A 507 O HOH A 941 1.93 REMARK 500 O HOH A 827 O HOH A 1016 1.93 REMARK 500 O HOH B 922 O HOH B 987 1.93 REMARK 500 O HOH A 783 O HOH A 946 1.93 REMARK 500 O PHE B 516 O HOH B 966 1.96 REMARK 500 O HOH B 941 O HOH B 985 1.96 REMARK 500 OD2 ASP B 474 O HOH B 983 1.98 REMARK 500 O HOH B 793 O HOH B 981 2.00 REMARK 500 O HOH A 936 O HOH A 952 2.00 REMARK 500 O HOH B 850 O HOH B 928 2.01 REMARK 500 O HOH A 904 O HOH A 976 2.03 REMARK 500 O HOH A 886 O HOH A 940 2.03 REMARK 500 N THR A 502 O HOH A 1012 2.05 REMARK 500 OE1 GLN B 114 O HOH B 1008 2.08 REMARK 500 NH2 ARG A 25 O HOH A 955 2.09 REMARK 500 O PRO A 264 O HOH A 910 2.09 REMARK 500 O HOH A 942 O HOH A 1002 2.10 REMARK 500 O HOH B 821 O HOH B 956 2.11 REMARK 500 O HOH A 958 O HOH A 1002 2.14 REMARK 500 O HOH A 972 O HOH A 1006 2.14 REMARK 500 O HOH A 896 O HOH A 946 2.14 REMARK 500 O HOH B 820 O HOH B 930 2.17 REMARK 500 O HOH B 861 O HOH B 967 2.17 REMARK 500 O HOH B 934 O HOH B 987 2.17 REMARK 500 O VAL B 472 O HOH B 1000 2.17 REMARK 500 O HOH B 1010 O HOH B 1012 2.17 REMARK 500 O ALA A 454 O HOH A 1005 2.18 REMARK 500 O HOH A 987 O HOH A 1022 2.18 REMARK 500 O HOH B 935 O HOH B 955 2.18 REMARK 500 O HOH B 1002 O HOH B 1011 2.18 REMARK 500 O HOH B 911 O HOH B 912 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 -66.72 -94.61 REMARK 500 PHE A 166 -133.72 -111.25 REMARK 500 LYS A 290 -128.89 -126.62 REMARK 500 ASN A 301 -152.19 -119.85 REMARK 500 HIS A 304 5.61 -157.75 REMARK 500 ASP A 464 31.73 -150.61 REMARK 500 VAL A 472 16.32 -144.22 REMARK 500 HIS A 515 19.62 59.01 REMARK 500 PHE B 21 -66.25 -95.50 REMARK 500 PHE B 166 -133.95 -111.59 REMARK 500 LYS B 290 -128.41 -125.25 REMARK 500 ASN B 301 -150.17 -121.82 REMARK 500 HIS B 304 4.58 -157.13 REMARK 500 ASP B 464 30.33 -150.39 REMARK 500 VAL B 472 14.50 -145.39 REMARK 500 ALA B 514 -136.70 51.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASP A 27 OD1 78.3 REMARK 620 3 VAL A 29 O 90.5 86.5 REMARK 620 4 ASP A 31 OD2 87.0 160.6 106.4 REMARK 620 5 HOH A 934 O 151.1 89.6 115.2 97.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 23 OD1 REMARK 620 2 ASP B 27 OD1 79.6 REMARK 620 3 VAL B 29 O 87.4 87.7 REMARK 620 4 ASP B 31 OD1 83.7 154.1 111.3 REMARK 620 5 HOH B 705 O 147.0 84.9 121.1 99.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRU A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRU B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WY2 RELATED DB: PDB REMARK 900 WILD TYPE PROTEIN COMPLEXED WITH GLUCOSE REMARK 900 RELATED ID: 3WY3 RELATED DB: PDB REMARK 900 D202N MUTANT IN COMPLEXED WITH GLUCOSE AND GLYCEROL REMARK 900 RELATED ID: 3WY4 RELATED DB: PDB REMARK 900 E271Q MUTANT IN COMPLEXED WITH MALTOSE DBREF 3WY1 A 1 538 UNP H3K096 H3K096_9GAMM 1 538 DBREF 3WY1 B 1 538 UNP H3K096 H3K096_9GAMM 1 538 SEQRES 1 A 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 A 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 A 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 A 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 A 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 A 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 A 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 A 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 A 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 A 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 A 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 A 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 A 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 A 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 A 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 A 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 A 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 A 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 A 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 A 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 A 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLU ILE GLY SEQRES 22 A 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 A 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 A 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 A 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 A 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 A 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 A 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 A 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 A 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 A 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 A 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 A 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 A 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 A 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 A 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 A 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 A 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 A 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 A 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 A 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 A 538 PHE MET GLN VAL ALA SEQRES 1 B 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 B 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 B 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 B 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 B 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 B 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 B 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 B 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 B 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 B 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 B 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 B 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 B 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 B 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 B 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 B 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 B 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 B 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 B 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 B 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 B 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLU ILE GLY SEQRES 22 B 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 B 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 B 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 B 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 B 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 B 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 B 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 B 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 B 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 B 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 B 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 B 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 B 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 B 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 B 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 B 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 B 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 B 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 B 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 B 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 B 538 PHE MET GLN VAL ALA HET MG A 600 1 HET GOL A 601 6 HET PRU A 602 20 HET MG B 601 1 HET PRU B 602 20 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PRU (3R,5R,7R)-OCTANE-1,3,5,7-TETRACARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PRU POLYACRYLIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 PRU 2(C12 H18 O8) FORMUL 8 HOH *649(H2 O) HELIX 1 1 TYR A 17 PHE A 21 5 5 HELIX 2 2 ASP A 31 LEU A 45 1 15 HELIX 3 3 THR A 79 LEU A 93 1 15 HELIX 4 4 HIS A 110 ARG A 117 1 8 HELIX 5 5 HIS A 177 ASP A 193 1 17 HELIX 6 6 THR A 203 TYR A 207 5 5 HELIX 7 7 ASN A 233 GLN A 238 5 6 HELIX 8 8 PRO A 247 GLU A 262 1 16 HELIX 9 9 ASN A 276 ALA A 286 1 11 HELIX 10 10 SER A 305 LEU A 319 1 15 HELIX 11 11 ARG A 336 TRP A 341 1 6 HELIX 12 12 ALA A 349 LEU A 361 1 13 HELIX 13 13 GLY A 370 GLY A 374 5 5 HELIX 14 14 PRO A 381 ILE A 385 5 5 HELIX 15 15 ASP A 387 LYS A 391 5 5 HELIX 16 16 ARG A 400 ARG A 404 5 5 HELIX 17 17 GLY A 412 PHE A 417 5 6 HELIX 18 18 GLU A 427 LEU A 433 5 7 HELIX 19 19 ALA A 434 GLN A 439 1 6 HELIX 20 20 ALA A 444 SER A 458 1 15 HELIX 21 21 PRO A 460 GLY A 465 1 6 HELIX 22 22 TYR B 17 PHE B 21 5 5 HELIX 23 23 ASP B 31 LEU B 45 1 15 HELIX 24 24 THR B 79 LEU B 93 1 15 HELIX 25 25 HIS B 110 ARG B 117 1 8 HELIX 26 26 HIS B 177 LEU B 194 1 18 HELIX 27 27 THR B 203 TYR B 207 5 5 HELIX 28 28 ASN B 233 GLN B 238 5 6 HELIX 29 29 PRO B 247 GLU B 262 1 16 HELIX 30 30 ASN B 276 ALA B 286 1 11 HELIX 31 31 GLY B 287 ASP B 289 5 3 HELIX 32 32 SER B 305 LEU B 319 1 15 HELIX 33 33 ARG B 336 TRP B 341 1 6 HELIX 34 34 ALA B 349 LEU B 361 1 13 HELIX 35 35 GLY B 370 GLY B 374 5 5 HELIX 36 36 PRO B 381 ILE B 385 5 5 HELIX 37 37 ASP B 387 LYS B 391 5 5 HELIX 38 38 ARG B 400 ARG B 404 5 5 HELIX 39 39 GLY B 412 PHE B 417 5 6 HELIX 40 40 GLU B 427 GLU B 432 1 6 HELIX 41 41 ALA B 434 GLN B 439 1 6 HELIX 42 42 ALA B 444 SER B 458 1 15 HELIX 43 43 PRO B 460 GLY B 465 1 6 SHEET 1 A 8 MET A 293 TYR A 295 0 SHEET 2 A 8 THR A 267 GLU A 271 1 N GLY A 270 O TYR A 295 SHEET 3 A 8 GLY A 198 LEU A 201 1 N LEU A 201 O VAL A 269 SHEET 4 A 8 LYS A 96 GLN A 101 1 N GLN A 101 O ARG A 200 SHEET 5 A 8 GLY A 49 LEU A 52 1 N ILE A 50 O MET A 98 SHEET 6 A 8 VAL A 12 ILE A 16 1 N TYR A 14 O GLY A 49 SHEET 7 A 8 SER A 364 TYR A 368 1 O LEU A 367 N ILE A 13 SHEET 8 A 8 CYS A 326 ALA A 328 1 N TRP A 327 O CYS A 366 SHEET 1 B 2 PHE A 56 THR A 57 0 SHEET 2 B 2 ASP A 69 VAL A 73 -1 N ASP A 69 O THR A 57 SHEET 1 C 3 TRP A 130 ALA A 131 0 SHEET 2 C 3 GLN A 160 LEU A 163 -1 O TYR A 161 N ALA A 131 SHEET 3 C 3 TRP A 152 ASP A 155 -1 N THR A 153 O TYR A 162 SHEET 1 D 5 ASP A 466 LEU A 469 0 SHEET 2 D 5 LEU A 477 LYS A 483 -1 O THR A 480 N SER A 468 SHEET 3 D 5 GLU A 486 PHE A 492 -1 O CYS A 490 N PHE A 479 SHEET 4 D 5 ALA A 532 VAL A 537 -1 O MET A 535 N LEU A 489 SHEET 5 D 5 VAL A 507 LEU A 511 -1 N ALA A 508 O GLN A 536 SHEET 1 E 3 GLN A 499 THR A 502 0 SHEET 2 E 3 THR A 524 LEU A 527 -1 O LEU A 525 N THR A 501 SHEET 3 E 3 THR A 519 ASP A 521 -1 N ASP A 521 O THR A 524 SHEET 1 F 8 MET B 293 TYR B 295 0 SHEET 2 F 8 THR B 267 GLU B 271 1 N GLY B 270 O MET B 293 SHEET 3 F 8 GLY B 198 LEU B 201 1 N LEU B 201 O GLU B 271 SHEET 4 F 8 LYS B 96 GLN B 101 1 N GLN B 101 O ARG B 200 SHEET 5 F 8 GLY B 49 LEU B 52 1 N ILE B 50 O MET B 98 SHEET 6 F 8 VAL B 12 ILE B 16 1 N ILE B 16 O TRP B 51 SHEET 7 F 8 SER B 364 TYR B 368 1 O VAL B 365 N ILE B 13 SHEET 8 F 8 CYS B 326 ALA B 328 1 N TRP B 327 O CYS B 366 SHEET 1 G 2 PHE B 56 THR B 57 0 SHEET 2 G 2 ASP B 69 VAL B 73 -1 N ASP B 69 O THR B 57 SHEET 1 H 3 TRP B 130 ALA B 131 0 SHEET 2 H 3 GLN B 160 LEU B 163 -1 O TYR B 161 N ALA B 131 SHEET 3 H 3 TRP B 152 ASP B 155 -1 N ASP B 155 O GLN B 160 SHEET 1 I 5 ASP B 466 LEU B 469 0 SHEET 2 I 5 LEU B 477 LYS B 483 -1 O THR B 480 N SER B 468 SHEET 3 I 5 GLU B 486 PHE B 492 -1 O CYS B 490 N PHE B 479 SHEET 4 I 5 ALA B 532 VAL B 537 -1 O MET B 535 N LEU B 489 SHEET 5 I 5 VAL B 507 LEU B 511 -1 N ALA B 508 O GLN B 536 SHEET 1 J 3 GLN B 499 THR B 502 0 SHEET 2 J 3 THR B 524 LEU B 527 -1 O LEU B 527 N GLN B 499 SHEET 3 J 3 THR B 519 ASP B 521 -1 N ASP B 521 O THR B 524 LINK OD1 ASP A 23 MG MG A 600 1555 1555 2.37 LINK OD1 ASP A 27 MG MG A 600 1555 1555 2.37 LINK O VAL A 29 MG MG A 600 1555 1555 2.22 LINK OD2 ASP A 31 MG MG A 600 1555 1555 2.41 LINK MG MG A 600 O HOH A 934 1555 1555 2.07 LINK OD1 ASP B 23 MG MG B 601 1555 1555 2.40 LINK OD1 ASP B 27 MG MG B 601 1555 1555 2.41 LINK O VAL B 29 MG MG B 601 1555 1555 2.14 LINK OD1 ASP B 31 MG MG B 601 1555 1555 2.24 LINK MG MG B 601 O HOH B 705 1555 1555 2.20 CISPEP 1 TRP A 394 PRO A 395 0 2.19 CISPEP 2 TRP B 394 PRO B 395 0 2.64 SITE 1 AC1 5 ASP A 23 ASP A 27 VAL A 29 ASP A 31 SITE 2 AC1 5 HOH A 934 SITE 1 AC2 10 SER A 104 VAL A 129 ASN A 165 ASP A 172 SITE 2 AC2 10 VAL A 173 PHE A 206 TYR A 207 HIS A 209 SITE 3 AC2 10 ASP A 243 HOH A 728 SITE 1 AC3 16 ASP A 62 TYR A 65 HIS A 105 PHE A 147 SITE 2 AC3 16 PHE A 166 ARG A 200 ASP A 202 THR A 203 SITE 3 AC3 16 GLY A 228 GLU A 271 PHE A 297 HIS A 332 SITE 4 AC3 16 ASP A 333 ARG A 400 HOH A 704 HOH A 816 SITE 1 AC4 5 ASP B 23 ASP B 27 VAL B 29 ASP B 31 SITE 2 AC4 5 HOH B 705 SITE 1 AC5 17 ASP B 62 TYR B 65 HIS B 105 ILE B 146 SITE 2 AC5 17 PHE B 147 PHE B 166 ARG B 200 ASP B 202 SITE 3 AC5 17 THR B 203 GLY B 228 GLU B 271 PHE B 297 SITE 4 AC5 17 HIS B 332 ASP B 333 ARG B 400 HOH B 748 SITE 5 AC5 17 HOH B 924 CRYST1 60.540 119.590 177.970 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005619 0.00000