HEADER HYDROLASE 18-AUG-14 3WY2 TITLE CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE IN COMPLEX WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOMONAS SP. H11; SOURCE 3 ORGANISM_TAXID: 1076127; SOURCE 4 GENE: AGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG-CTS KEYWDS ALPHA-GLUCOSIDASE, TIM BARREL, GLUCOSIDASE, CARBOHYDRATE/SUGAR KEYWDS 2 BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SHEN,Z.GAI,K.KATO,M.YAO REVDAT 5 25-DEC-24 3WY2 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 3WY2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 21-MAR-18 3WY2 1 JRNL REVDAT 2 22-NOV-17 3WY2 1 REMARK REVDAT 1 10-JUN-15 3WY2 0 JRNL AUTH X.SHEN,W.SABURI,Z.GAI,K.KATO,T.OJIMA-KATO,J.YU,K.KOMODA, JRNL AUTH 2 Y.KIDO,H.MATSUI,H.MORI,M.YAO JRNL TITL STRUCTURAL ANALYSIS OF THE ALPHA-GLUCOSIDASE HAG PROVIDES JRNL TITL 2 NEW INSIGHTS INTO SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 3 MECHANISM JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 1382 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26057678 JRNL DOI 10.1107/S139900471500721X REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 197027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1078 - 4.5689 1.00 6647 342 0.1494 0.1714 REMARK 3 2 4.5689 - 3.6270 1.00 6407 354 0.1271 0.1427 REMARK 3 3 3.6270 - 3.1686 1.00 6330 339 0.1430 0.1541 REMARK 3 4 3.1686 - 2.8790 1.00 6348 319 0.1550 0.1910 REMARK 3 5 2.8790 - 2.6726 1.00 6315 331 0.1627 0.1710 REMARK 3 6 2.6726 - 2.5151 1.00 6296 327 0.1589 0.1872 REMARK 3 7 2.5151 - 2.3891 1.00 6273 335 0.1615 0.1787 REMARK 3 8 2.3891 - 2.2851 1.00 6265 338 0.1557 0.1820 REMARK 3 9 2.2851 - 2.1972 1.00 6260 330 0.1564 0.1683 REMARK 3 10 2.1972 - 2.1213 1.00 6238 321 0.1544 0.1759 REMARK 3 11 2.1213 - 2.0550 1.00 6242 317 0.1556 0.1663 REMARK 3 12 2.0550 - 1.9963 1.00 6229 322 0.1526 0.1942 REMARK 3 13 1.9963 - 1.9437 1.00 6279 318 0.1552 0.1837 REMARK 3 14 1.9437 - 1.8963 1.00 6185 338 0.1598 0.1875 REMARK 3 15 1.8963 - 1.8532 1.00 6196 352 0.1593 0.1977 REMARK 3 16 1.8532 - 1.8137 1.00 6217 324 0.1616 0.1998 REMARK 3 17 1.8137 - 1.7775 1.00 6249 329 0.1648 0.1901 REMARK 3 18 1.7775 - 1.7439 1.00 6209 319 0.1693 0.2086 REMARK 3 19 1.7439 - 1.7128 1.00 6183 326 0.1596 0.1729 REMARK 3 20 1.7128 - 1.6837 1.00 6222 327 0.1582 0.1777 REMARK 3 21 1.6837 - 1.6566 1.00 6212 327 0.1621 0.2005 REMARK 3 22 1.6566 - 1.6311 1.00 6181 325 0.1634 0.1957 REMARK 3 23 1.6311 - 1.6071 1.00 6229 328 0.1674 0.2089 REMARK 3 24 1.6071 - 1.5845 1.00 6178 325 0.1788 0.2124 REMARK 3 25 1.5845 - 1.5630 1.00 6191 326 0.1805 0.2076 REMARK 3 26 1.5630 - 1.5427 1.00 6131 324 0.1814 0.1995 REMARK 3 27 1.5427 - 1.5235 1.00 6262 329 0.1900 0.2401 REMARK 3 28 1.5235 - 1.5051 1.00 6151 324 0.1984 0.2239 REMARK 3 29 1.5051 - 1.4876 1.00 6209 327 0.2046 0.2323 REMARK 3 30 1.4876 - 1.4709 0.95 5845 305 0.2372 0.2944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8902 REMARK 3 ANGLE : 1.060 12133 REMARK 3 CHIRALITY : 0.073 1258 REMARK 3 PLANARITY : 0.006 1610 REMARK 3 DIHEDRAL : 12.843 3225 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -40.8258 12.2212 -17.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0727 REMARK 3 T33: 0.0973 T12: 0.0058 REMARK 3 T13: 0.0024 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.4239 L22: 0.1875 REMARK 3 L33: 0.6543 L12: -0.0368 REMARK 3 L13: -0.1371 L23: 0.0708 REMARK 3 S TENSOR REMARK 3 S11: 0.0285 S12: 0.0293 S13: 0.0001 REMARK 3 S21: 0.0027 S22: -0.0339 S23: 0.0095 REMARK 3 S31: -0.0232 S32: -0.0673 S33: 0.0084 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -15.8766 -15.1580 22.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.0806 REMARK 3 T33: 0.1225 T12: 0.0279 REMARK 3 T13: -0.0138 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 0.4191 L22: 0.3365 REMARK 3 L33: 1.1411 L12: -0.1872 REMARK 3 L13: 0.4372 L23: -0.2714 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.0051 S13: 0.0912 REMARK 3 S21: 0.0577 S22: -0.0126 S23: -0.0504 REMARK 3 S31: -0.1123 S32: 0.0072 S33: 0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000096936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 197034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.53900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 6000, 0.1M HEPES, 0.5M LITHIUM REMARK 280 CHLORIDE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.60950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.44500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.90450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.44500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.60950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.90450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 602 O HOH A 795 1.96 REMARK 500 OD2 ASP A 255 O HOH A 795 1.97 REMARK 500 O ALA A 428 O HOH A 1249 2.00 REMARK 500 O HOH B 890 O HOH B 1056 2.11 REMARK 500 O HOH A 1138 O HOH A 1466 2.11 REMARK 500 O HOH A 1057 O HOH A 1420 2.11 REMARK 500 O HOH B 1228 O HOH B 1328 2.11 REMARK 500 O ALA A 514 O HOH A 1346 2.15 REMARK 500 NE2 GLN A 499 O HOH A 922 2.16 REMARK 500 OD1 ASP A 202 C1 BGC A 605 2.16 REMARK 500 O HOH A 831 O HOH A 1343 2.16 REMARK 500 O HOH A 998 O HOH A 1228 2.16 REMARK 500 O HOH B 1028 O HOH B 1093 2.17 REMARK 500 O HOH B 1077 O HOH B 1246 2.17 REMARK 500 O HOH B 1309 O HOH B 1315 2.17 REMARK 500 O HOH A 874 O HOH A 1342 2.18 REMARK 500 O HOH B 978 O HOH B 1350 2.18 REMARK 500 O HOH A 1047 O HOH A 1244 2.18 REMARK 500 O HOH A 1249 O HOH A 1340 2.19 REMARK 500 OD1 ASN A 4 O HOH A 899 2.19 REMARK 500 O HOH A 865 O HOH A 1476 2.19 REMARK 500 O HOH A 1181 O HOH A 1268 2.19 REMARK 500 O HOH A 1417 O HOH A 1421 2.19 REMARK 500 O HOH B 1341 O HOH B 1352 2.19 REMARK 500 O HOH B 1136 O HOH B 1236 2.19 REMARK 500 O HOH A 957 O HOH A 1155 2.19 REMARK 500 O HOH A 1023 O HOH A 1093 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1014 O HOH B 907 2354 2.07 REMARK 500 O HOH A 1466 O HOH B 1346 2454 2.16 REMARK 500 O HOH A 1175 O HOH B 1195 2454 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 -68.14 -93.83 REMARK 500 VAL A 102 73.17 -107.62 REMARK 500 PHE A 166 -130.10 -115.82 REMARK 500 THR A 203 56.31 35.42 REMARK 500 LYS A 290 -130.21 -130.88 REMARK 500 ASN A 301 -156.94 -121.07 REMARK 500 HIS A 304 6.91 -155.04 REMARK 500 ASN A 331 -169.50 -161.60 REMARK 500 ASP A 464 26.44 -147.86 REMARK 500 PHE B 21 -69.26 -94.65 REMARK 500 PHE B 166 -128.41 -113.28 REMARK 500 THR B 203 53.78 38.25 REMARK 500 LYS B 290 -128.34 -131.38 REMARK 500 ASN B 301 -156.53 -120.62 REMARK 500 HIS B 304 4.91 -155.45 REMARK 500 GLN B 414 18.01 55.06 REMARK 500 ASP B 464 27.12 -151.25 REMARK 500 ALA B 514 -128.88 54.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1056 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1098 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1139 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A1185 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1428 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1166 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B1199 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B1221 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1234 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH B1281 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B1287 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH B1319 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1324 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1381 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B1401 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B1404 DISTANCE = 6.94 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 BGC A 605 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 VAL A 29 O 92.9 REMARK 620 3 ASP A 31 OD2 99.8 113.0 REMARK 620 4 HOH A 779 O 136.3 102.9 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 23 OD1 REMARK 620 2 ASP B 27 OD1 96.4 REMARK 620 3 VAL B 29 O 93.9 93.5 REMARK 620 4 ASP B 31 OD2 93.3 162.1 100.9 REMARK 620 5 HOH B 816 O 157.8 67.8 102.3 98.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WY1 RELATED DB: PDB REMARK 900 WILD TYPE APOPROTEIN REMARK 900 RELATED ID: 3WY3 RELATED DB: PDB REMARK 900 D202N MUTANT IN COMPLEXED WITH GLUCOSE AND GLYCEROL REMARK 900 RELATED ID: 3WY4 RELATED DB: PDB REMARK 900 E271Q MUTANT IN COMPLEXED WITH MALTOSE DBREF 3WY2 A 1 538 UNP H3K096 H3K096_9GAMM 1 538 DBREF 3WY2 B 1 538 UNP H3K096 H3K096_9GAMM 1 538 SEQRES 1 A 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 A 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 A 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 A 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 A 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 A 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 A 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 A 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 A 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 A 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 A 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 A 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 A 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 A 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 A 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 A 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 A 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 A 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 A 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 A 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 A 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLU ILE GLY SEQRES 22 A 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 A 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 A 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 A 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 A 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 A 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 A 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 A 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 A 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 A 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 A 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 A 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 A 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 A 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 A 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 A 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 A 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 A 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 A 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 A 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 A 538 PHE MET GLN VAL ALA SEQRES 1 B 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 B 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 B 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 B 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 B 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 B 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 B 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 B 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 B 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 B 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 B 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 B 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 B 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 B 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 B 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 B 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 B 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 B 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 B 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 B 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 B 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLU ILE GLY SEQRES 22 B 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 B 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 B 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 B 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 B 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 B 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 B 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 B 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 B 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 B 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 B 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 B 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 B 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 B 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 B 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 B 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 B 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 B 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 B 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 B 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 B 538 PHE MET GLN VAL ALA HET MG A 600 1 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET BGC A 605 11 HET GOL B 601 6 HET MG B 602 1 HET GOL B 603 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 MG 2(MG 2+) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 8 BGC C6 H12 O6 FORMUL 12 HOH *1503(H2 O) HELIX 1 1 TYR A 17 PHE A 21 5 5 HELIX 2 2 ASP A 31 LYS A 38 1 8 HELIX 3 3 LYS A 38 LEU A 45 1 8 HELIX 4 4 THR A 79 LEU A 93 1 15 HELIX 5 5 HIS A 110 ARG A 117 1 8 HELIX 6 6 HIS A 177 LEU A 194 1 18 HELIX 7 7 THR A 203 TYR A 207 5 5 HELIX 8 8 ASN A 233 GLN A 238 5 6 HELIX 9 9 PRO A 247 GLU A 262 1 16 HELIX 10 10 ASN A 276 ALA A 286 1 11 HELIX 11 11 SER A 305 GLN A 317 1 13 HELIX 12 12 ARG A 336 TRP A 341 1 6 HELIX 13 13 HIS A 348 PHE A 359 1 12 HELIX 14 14 GLY A 370 GLY A 374 5 5 HELIX 15 15 PRO A 381 ILE A 385 5 5 HELIX 16 16 ASP A 387 LYS A 391 5 5 HELIX 17 17 ARG A 400 ARG A 404 5 5 HELIX 18 18 GLY A 412 PHE A 417 5 6 HELIX 19 19 GLU A 427 LEU A 433 1 7 HELIX 20 20 ALA A 434 GLN A 439 1 6 HELIX 21 21 ALA A 444 SER A 458 1 15 HELIX 22 22 PRO A 460 GLY A 465 1 6 HELIX 23 23 TYR B 17 PHE B 21 5 5 HELIX 24 24 ASP B 31 LYS B 38 1 8 HELIX 25 25 LYS B 38 LEU B 45 1 8 HELIX 26 26 PRO B 75 GLY B 78 5 4 HELIX 27 27 THR B 79 LEU B 93 1 15 HELIX 28 28 HIS B 110 ARG B 117 1 8 HELIX 29 29 HIS B 177 LEU B 194 1 18 HELIX 30 30 THR B 203 TYR B 207 5 5 HELIX 31 31 ASN B 233 GLN B 238 5 6 HELIX 32 32 PRO B 247 GLU B 262 1 16 HELIX 33 33 ASN B 276 ALA B 286 1 11 HELIX 34 34 SER B 305 ARG B 318 1 14 HELIX 35 35 ARG B 336 TRP B 341 1 6 HELIX 36 36 HIS B 348 PHE B 359 1 12 HELIX 37 37 GLY B 370 GLY B 374 5 5 HELIX 38 38 PRO B 381 ILE B 385 5 5 HELIX 39 39 ASP B 387 LYS B 391 5 5 HELIX 40 40 ARG B 400 ARG B 404 5 5 HELIX 41 41 GLY B 412 PHE B 417 5 6 HELIX 42 42 GLU B 427 GLU B 432 1 6 HELIX 43 43 ALA B 434 GLN B 439 1 6 HELIX 44 44 ALA B 444 HIS B 459 1 16 HELIX 45 45 PRO B 460 GLY B 465 1 6 SHEET 1 A 8 MET A 293 TYR A 295 0 SHEET 2 A 8 THR A 267 GLU A 271 1 N GLY A 270 O TYR A 295 SHEET 3 A 8 GLY A 198 LEU A 201 1 N LEU A 201 O VAL A 269 SHEET 4 A 8 LYS A 96 GLN A 101 1 N GLN A 101 O ARG A 200 SHEET 5 A 8 GLY A 49 LEU A 52 1 N ILE A 50 O MET A 98 SHEET 6 A 8 VAL A 12 ILE A 16 1 N ILE A 16 O TRP A 51 SHEET 7 A 8 SER A 364 TYR A 368 1 O VAL A 365 N ILE A 13 SHEET 8 A 8 CYS A 326 ALA A 328 1 N TRP A 327 O SER A 364 SHEET 1 B 2 PHE A 56 THR A 57 0 SHEET 2 B 2 ASP A 69 VAL A 73 -1 O ASP A 72 N THR A 57 SHEET 1 C 3 TRP A 130 ALA A 131 0 SHEET 2 C 3 GLN A 160 LEU A 163 -1 O TYR A 161 N ALA A 131 SHEET 3 C 3 TRP A 152 ASP A 155 -1 N ASP A 155 O GLN A 160 SHEET 1 D 5 ASP A 466 LEU A 469 0 SHEET 2 D 5 LEU A 477 LYS A 483 -1 O THR A 480 N SER A 468 SHEET 3 D 5 GLU A 486 PHE A 492 -1 O CYS A 490 N PHE A 479 SHEET 4 D 5 ALA A 532 VAL A 537 -1 O VAL A 537 N THR A 487 SHEET 5 D 5 VAL A 507 ASP A 510 -1 N ALA A 508 O GLN A 536 SHEET 1 E 3 GLN A 499 THR A 502 0 SHEET 2 E 3 THR A 524 LEU A 527 -1 O LEU A 527 N GLN A 499 SHEET 3 E 3 THR A 519 ASP A 521 -1 N THR A 519 O THR A 526 SHEET 1 F 8 MET B 293 TYR B 295 0 SHEET 2 F 8 THR B 267 GLU B 271 1 N GLY B 270 O TYR B 295 SHEET 3 F 8 GLY B 198 LEU B 201 1 N LEU B 201 O GLU B 271 SHEET 4 F 8 LYS B 96 GLN B 101 1 N GLN B 101 O ARG B 200 SHEET 5 F 8 GLY B 49 LEU B 52 1 N ILE B 50 O MET B 98 SHEET 6 F 8 VAL B 12 ILE B 16 1 N ILE B 16 O TRP B 51 SHEET 7 F 8 SER B 364 TYR B 368 1 O VAL B 365 N ILE B 13 SHEET 8 F 8 CYS B 326 ALA B 328 1 N TRP B 327 O SER B 364 SHEET 1 G 2 PHE B 56 THR B 57 0 SHEET 2 G 2 ASP B 69 VAL B 73 -1 N ASP B 69 O THR B 57 SHEET 1 H 3 TRP B 130 ALA B 131 0 SHEET 2 H 3 GLN B 160 LEU B 163 -1 O TYR B 161 N ALA B 131 SHEET 3 H 3 TRP B 152 ASP B 155 -1 N ASP B 155 O GLN B 160 SHEET 1 I 5 ASP B 466 LEU B 469 0 SHEET 2 I 5 LEU B 477 LYS B 483 -1 O THR B 480 N SER B 468 SHEET 3 I 5 GLU B 486 PHE B 492 -1 O CYS B 490 N PHE B 479 SHEET 4 I 5 ALA B 532 VAL B 537 -1 O VAL B 537 N THR B 487 SHEET 5 I 5 VAL B 507 LEU B 511 -1 N ALA B 508 O GLN B 536 SHEET 1 J 3 GLN B 499 THR B 502 0 SHEET 2 J 3 THR B 524 LEU B 527 -1 O LEU B 525 N THR B 501 SHEET 3 J 3 THR B 519 ASP B 521 -1 N THR B 519 O THR B 526 LINK OD1 ASP A 23 MG MG A 600 1555 1555 2.01 LINK O VAL A 29 MG MG A 600 1555 1555 2.12 LINK OD2 ASP A 31 MG MG A 600 1555 1555 2.03 LINK MG MG A 600 O HOH A 779 1555 1555 1.90 LINK OD1 ASP B 23 MG MG B 602 1555 1555 2.00 LINK OD1 ASP B 27 MG MG B 602 1555 1555 2.55 LINK O VAL B 29 MG MG B 602 1555 1555 2.19 LINK OD2 ASP B 31 MG MG B 602 1555 1555 2.39 LINK MG MG B 602 O HOH B 816 1555 1555 2.00 CISPEP 1 TRP A 394 PRO A 395 0 5.02 CISPEP 2 TRP B 394 PRO B 395 0 -0.15 CRYST1 63.219 103.809 176.890 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005653 0.00000