HEADER HYDROLASE 18-AUG-14 3WY4 TITLE CRYSTAL STRUCTURE OF ALPHA-GLUCOSIDASE MUTANT E271Q IN COMPLEX WITH TITLE 2 MALTOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.2.1.20; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOMONAS SP. H11; SOURCE 3 ORGANISM_TAXID: 1076127; SOURCE 4 GENE: AGLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFLAG-CTS KEYWDS ALPHA-GLUCOSIDASE, TIM BARREL, GLUCOSIDASE, CARBOHYDRATE/SUGAR KEYWDS 2 BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.SHEN,Z.GAI,K.KATO,M.YAO REVDAT 5 20-MAR-24 3WY4 1 HETSYN REVDAT 4 29-JUL-20 3WY4 1 COMPND REMARK SEQADV HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 21-MAR-18 3WY4 1 JRNL REVDAT 2 22-NOV-17 3WY4 1 REMARK REVDAT 1 10-JUN-15 3WY4 0 JRNL AUTH X.SHEN,W.SABURI,Z.GAI,K.KATO,T.OJIMA-KATO,J.YU,K.KOMODA, JRNL AUTH 2 Y.KIDO,H.MATSUI,H.MORI,M.YAO JRNL TITL STRUCTURAL ANALYSIS OF THE ALPHA-GLUCOSIDASE HAG PROVIDES JRNL TITL 2 NEW INSIGHTS INTO SUBSTRATE SPECIFICITY AND CATALYTIC JRNL TITL 3 MECHANISM JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 1382 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26057678 JRNL DOI 10.1107/S139900471500721X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4683 - 5.8751 0.97 2837 149 0.1807 0.2035 REMARK 3 2 5.8751 - 4.6646 0.99 2782 147 0.1769 0.2270 REMARK 3 3 4.6646 - 4.0753 1.00 2748 144 0.1624 0.2219 REMARK 3 4 4.0753 - 3.7029 1.00 2718 143 0.1745 0.2079 REMARK 3 5 3.7029 - 3.4375 1.00 2717 143 0.1916 0.2209 REMARK 3 6 3.4375 - 3.2349 1.00 2690 141 0.2104 0.2608 REMARK 3 7 3.2349 - 3.0729 1.00 2697 142 0.2211 0.2448 REMARK 3 8 3.0729 - 2.9392 1.00 2711 143 0.2401 0.2760 REMARK 3 9 2.9392 - 2.8261 1.00 2695 140 0.2455 0.3337 REMARK 3 10 2.8261 - 2.7285 1.00 2644 140 0.2531 0.2658 REMARK 3 11 2.7285 - 2.6432 1.00 2725 146 0.2587 0.3000 REMARK 3 12 2.6432 - 2.5677 1.00 2672 126 0.2717 0.2739 REMARK 3 13 2.5677 - 2.5001 1.00 2657 161 0.2724 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7963 REMARK 3 ANGLE : 0.789 10850 REMARK 3 CHIRALITY : 0.056 1141 REMARK 3 PLANARITY : 0.005 1427 REMARK 3 DIHEDRAL : 12.019 2872 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3WY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000096938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.93300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYACRYLIC ACID 5100, 0.1M HEPES, REMARK 280 0.02M MAGNESIUM CHLORIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.73200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 90.53100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.73200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 90.53100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 ASP A 3 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 23 REMARK 465 SER B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 ASP B 27 REMARK 465 GLY B 28 REMARK 465 VAL B 29 REMARK 465 GLY B 64 REMARK 465 TYR B 65 REMARK 465 ASP B 66 REMARK 465 VAL B 67 REMARK 465 SER B 68 REMARK 465 ASP B 69 REMARK 465 TYR B 70 REMARK 465 ARG B 71 REMARK 465 ASP B 72 REMARK 465 VAL B 73 REMARK 465 ASP B 74 REMARK 465 PRO B 75 REMARK 465 MET B 76 REMARK 465 PHE B 77 REMARK 465 GLY B 78 REMARK 465 GLY B 222 REMARK 465 GLU B 223 REMARK 465 ALA B 224 REMARK 465 LYS B 225 REMARK 465 THR B 226 REMARK 465 LEU B 227 REMARK 465 GLY B 228 REMARK 465 ALA B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 331 REMARK 465 HIS B 332 REMARK 465 ASP B 333 REMARK 465 VAL B 334 REMARK 465 VAL B 335 REMARK 465 ARG B 336 REMARK 465 SER B 337 REMARK 465 ALA B 338 REMARK 465 THR B 339 REMARK 465 ARG B 340 REMARK 465 TRP B 341 REMARK 465 GLY B 342 REMARK 465 ALA B 343 REMARK 465 ASP B 344 REMARK 465 GLU B 345 REMARK 465 LEU B 373 REMARK 465 GLY B 374 REMARK 465 LEU B 375 REMARK 465 PRO B 376 REMARK 465 GLU B 377 REMARK 465 ALA B 378 REMARK 465 ASP B 379 REMARK 465 VAL B 380 REMARK 465 PRO B 381 REMARK 465 PHE B 382 REMARK 465 GLU B 383 REMARK 465 ARG B 384 REMARK 465 ILE B 385 REMARK 465 GLN B 386 REMARK 465 ASP B 387 REMARK 465 PRO B 388 REMARK 465 TYR B 389 REMARK 465 GLY B 390 REMARK 465 LYS B 391 REMARK 465 VAL B 392 REMARK 465 LEU B 393 REMARK 465 TRP B 394 REMARK 465 PRO B 395 REMARK 465 GLU B 396 REMARK 465 PHE B 397 REMARK 465 LYS B 398 REMARK 465 GLY B 399 REMARK 465 ARG B 400 REMARK 465 ASP B 401 REMARK 465 GLY B 402 REMARK 465 CYS B 403 REMARK 465 ARG B 404 REMARK 465 THR B 405 REMARK 465 PRO B 406 REMARK 465 MET B 407 REMARK 465 PRO B 408 REMARK 465 TRP B 409 REMARK 465 THR B 410 REMARK 465 ASP B 411 REMARK 465 GLY B 412 REMARK 465 GLU B 413 REMARK 465 GLN B 414 REMARK 465 GLY B 415 REMARK 465 GLY B 416 REMARK 465 PHE B 417 REMARK 465 SER B 418 REMARK 465 PRO B 419 REMARK 465 VAL B 420 REMARK 465 GLU B 421 REMARK 465 PRO B 422 REMARK 465 TRP B 423 REMARK 465 LEU B 424 REMARK 465 PRO B 425 REMARK 465 MET B 426 REMARK 465 GLU B 427 REMARK 465 ALA B 428 REMARK 465 ARG B 429 REMARK 465 HIS B 430 REMARK 465 LEU B 431 REMARK 465 GLU B 432 REMARK 465 LEU B 433 REMARK 465 ALA B 434 REMARK 465 VAL B 435 REMARK 465 SER B 436 REMARK 465 ARG B 437 REMARK 465 GLN B 438 REMARK 465 GLN B 439 REMARK 465 ASP B 440 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 44 O HOH B 800 1.81 REMARK 500 O HOH A 926 O HOH A 933 1.87 REMARK 500 O HOH A 968 O HOH A 984 1.94 REMARK 500 OG1 THR B 480 O HOH B 729 1.95 REMARK 500 O ALA A 514 O HOH A 873 1.96 REMARK 500 O PRO B 139 O HOH B 795 1.96 REMARK 500 O HOH A 838 O HOH A 850 1.99 REMARK 500 OE1 GLU A 396 O HOH A 934 2.03 REMARK 500 O HOH A 891 O HOH A 929 2.03 REMARK 500 OE1 GLN B 499 O HOH B 731 2.05 REMARK 500 OE1 GLU B 179 O HOH B 777 2.06 REMARK 500 O HOH B 704 O HOH B 761 2.06 REMARK 500 O HOH A 849 O HOH A 984 2.06 REMARK 500 O HOH B 774 O HOH B 798 2.07 REMARK 500 O HOH B 797 O HOH B 839 2.07 REMARK 500 OE1 GLU A 311 O HOH A 827 2.07 REMARK 500 O ALA A 328 O HOH A 802 2.07 REMARK 500 O HOH A 990 O HOH A 993 2.08 REMARK 500 OD2 ASP A 289 O HOH A 888 2.09 REMARK 500 O HOH B 791 O HOH B 826 2.10 REMARK 500 O HOH B 752 O HOH B 775 2.10 REMARK 500 O HOH A 752 O HOH A 783 2.12 REMARK 500 OD1 ASP A 172 O HOH A 710 2.13 REMARK 500 O HOH A 963 O HOH A 966 2.14 REMARK 500 O HOH A 885 O HOH A 886 2.14 REMARK 500 O HOH B 807 O HOH B 858 2.15 REMARK 500 O HIS A 105 O HOH A 703 2.16 REMARK 500 O HOH A 795 O HOH A 963 2.17 REMARK 500 O HOH B 798 O HOH B 852 2.18 REMARK 500 O GLU B 372 O HOH B 848 2.18 REMARK 500 O HOH B 759 O HOH B 792 2.19 REMARK 500 O HOH A 945 O HOH A 947 2.19 REMARK 500 NH1 ARG A 315 O HOH A 962 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 442 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 21 -62.87 -95.96 REMARK 500 VAL A 102 77.38 -102.36 REMARK 500 ASN A 119 -168.40 -160.51 REMARK 500 PRO A 139 150.64 -45.77 REMARK 500 PHE A 166 -127.83 -128.10 REMARK 500 LYS A 290 -131.99 -130.21 REMARK 500 ASN A 301 -154.37 -117.02 REMARK 500 HIS A 304 7.10 -157.19 REMARK 500 ASN A 331 -160.86 -160.75 REMARK 500 ASP A 464 29.92 -149.93 REMARK 500 HIS A 515 13.00 56.07 REMARK 500 PRO B 54 36.95 -71.57 REMARK 500 SER B 58 -23.38 99.98 REMARK 500 LEU B 61 -55.81 -148.95 REMARK 500 ASP B 62 11.85 137.13 REMARK 500 PRO B 139 153.29 -49.41 REMARK 500 PHE B 166 -125.19 -118.90 REMARK 500 PRO B 220 -123.38 2.88 REMARK 500 ASN B 276 77.66 -117.15 REMARK 500 LYS B 290 -116.77 -132.72 REMARK 500 PHE B 297 122.39 60.34 REMARK 500 ASP B 298 -160.17 106.08 REMARK 500 LEU B 299 66.83 -44.23 REMARK 500 ASN B 301 -106.23 -130.09 REMARK 500 MET B 302 -130.37 -116.10 REMARK 500 HIS B 304 140.34 150.47 REMARK 500 SER B 305 127.38 167.36 REMARK 500 LEU B 319 -63.23 -96.13 REMARK 500 ALA B 320 96.70 -63.97 REMARK 500 PRO B 347 -108.56 -65.09 REMARK 500 HIS B 348 -34.94 52.44 REMARK 500 PRO B 442 117.04 -17.40 REMARK 500 ASN B 443 -49.12 67.44 REMARK 500 ASP B 464 31.85 -153.04 REMARK 500 ALA B 514 -126.93 53.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 58 PRO B 59 149.62 REMARK 500 PRO B 59 MET B 60 -149.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 600 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASP A 27 OD1 69.4 REMARK 620 3 VAL A 29 O 85.7 85.5 REMARK 620 4 ASP A 31 OD2 92.0 153.5 112.6 REMARK 620 5 HOH A 729 O 142.9 79.9 112.7 108.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WY1 RELATED DB: PDB REMARK 900 WILD TYPE APOPROTEIN REMARK 900 RELATED ID: 3WY2 RELATED DB: PDB REMARK 900 WILD TYPE PROTEIN COMPLEXED WITH GLUCOSE REMARK 900 RELATED ID: 3WY3 RELATED DB: PDB REMARK 900 D202N MUTANT IN COMPLEXED WITH GLUCOSE AND GLYCEROL DBREF 3WY4 A 1 538 UNP H3K096 H3K096_9GAMM 1 538 DBREF 3WY4 B 1 538 UNP H3K096 H3K096_9GAMM 1 538 SEQADV 3WY4 GLN A 271 UNP H3K096 GLU 271 ENGINEERED MUTATION SEQADV 3WY4 GLN B 271 UNP H3K096 GLU 271 ENGINEERED MUTATION SEQRES 1 A 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 A 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 A 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 A 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 A 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 A 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 A 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 A 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 A 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 A 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 A 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 A 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 A 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 A 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 A 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 A 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 A 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 A 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 A 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 A 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 A 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLN ILE GLY SEQRES 22 A 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 A 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 A 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 A 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 A 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 A 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 A 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 A 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 A 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 A 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 A 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 A 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 A 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 A 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 A 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 A 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 A 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 A 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 A 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 A 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 A 538 PHE MET GLN VAL ALA SEQRES 1 B 538 MET GLN ASP ASN MET MET TRP TRP ARG GLY GLY VAL ILE SEQRES 2 B 538 TYR GLN ILE TYR PRO ARG SER PHE LEU ASP SER ARG GLY SEQRES 3 B 538 ASP GLY VAL GLY ASP LEU ASN GLY ILE THR GLU LYS LEU SEQRES 4 B 538 ASP TYR VAL ALA SER LEU ASN VAL ASP GLY ILE TRP LEU SEQRES 5 B 538 SER PRO PHE PHE THR SER PRO MET LEU ASP PHE GLY TYR SEQRES 6 B 538 ASP VAL SER ASP TYR ARG ASP VAL ASP PRO MET PHE GLY SEQRES 7 B 538 THR LEU GLU ASP PHE LYS ALA LEU LEU GLU LYS ALA HIS SEQRES 8 B 538 SER LEU GLY LEU LYS VAL MET ILE ASP GLN VAL ILE SER SEQRES 9 B 538 HIS THR SER ASP GLN HIS PRO TRP PHE GLN GLU SER ARG SEQRES 10 B 538 GLN ASN ARG THR ASN PRO LYS ALA ASP TRP PHE VAL TRP SEQRES 11 B 538 ALA ASP PRO LYS PRO ASP GLY THR PRO PRO ASN ASN TRP SEQRES 12 B 538 LEU SER ILE PHE GLY GLY SER ALA TRP THR PHE ASP SER SEQRES 13 B 538 ARG ARG GLN GLN TYR TYR LEU HIS ASN PHE LEU THR SER SEQRES 14 B 538 GLN PRO ASP VAL ASN PHE HIS HIS PRO GLU ALA ARG GLN SEQRES 15 B 538 ALA GLN LEU ASP ASN MET ARG PHE TRP LEU ASP LEU GLY SEQRES 16 B 538 VAL ASP GLY PHE ARG LEU ASP THR VAL ASN PHE TYR PHE SEQRES 17 B 538 HIS ASP ALA GLU LEU ARG ASP ASN PRO PRO VAL PRO LYS SEQRES 18 B 538 GLY GLU ALA LYS THR LEU GLY ALA PRO GLU ALA ASN PRO SEQRES 19 B 538 TYR THR TRP GLN ARG HIS VAL TYR ASP LEU SER ARG PRO SEQRES 20 B 538 GLU ASN LEU ASP PHE LEU LYS ASP LEU ARG ALA LEU MET SEQRES 21 B 538 ASP GLU TYR PRO GLY THR THR THR VAL GLY GLN ILE GLY SEQRES 22 B 538 ASP ASP ASN PRO LEU GLU ARG MET ALA GLU TYR THR ALA SEQRES 23 B 538 GLY GLY ASP LYS LEU HIS MET ALA TYR THR PHE ASP LEU SEQRES 24 B 538 LEU ASN MET PRO HIS SER ALA SER TYR LEU ARG GLU VAL SEQRES 25 B 538 ILE GLU ARG PHE GLN ARG LEU ALA GLY ASP ALA TRP PRO SEQRES 26 B 538 CYS TRP ALA THR SER ASN HIS ASP VAL VAL ARG SER ALA SEQRES 27 B 538 THR ARG TRP GLY ALA ASP GLU ASP PRO HIS ALA TYR PRO SEQRES 28 B 538 LYS VAL MET LEU ALA VAL LEU PHE SER LEU ARG GLY SER SEQRES 29 B 538 VAL CYS LEU TYR GLN GLY GLU GLU LEU GLY LEU PRO GLU SEQRES 30 B 538 ALA ASP VAL PRO PHE GLU ARG ILE GLN ASP PRO TYR GLY SEQRES 31 B 538 LYS VAL LEU TRP PRO GLU PHE LYS GLY ARG ASP GLY CYS SEQRES 32 B 538 ARG THR PRO MET PRO TRP THR ASP GLY GLU GLN GLY GLY SEQRES 33 B 538 PHE SER PRO VAL GLU PRO TRP LEU PRO MET GLU ALA ARG SEQRES 34 B 538 HIS LEU GLU LEU ALA VAL SER ARG GLN GLN ASP ASP PRO SEQRES 35 B 538 ASN ALA THR LEU ASN THR VAL ARG ALA LEU LEU ALA PHE SEQRES 36 B 538 ARG ARG SER HIS PRO ALA LEU PHE ASP GLY ASP LEU SER SEQRES 37 B 538 LEU VAL ASP VAL GLY ASP ASP LEU LEU GLY PHE THR ARG SEQRES 38 B 538 GLN LYS GLY ASP GLU THR LEU LEU CYS VAL PHE ASN LEU SEQRES 39 B 538 THR GLY GLN GLU GLN GLN THR THR LEU PRO VAL GLU VAL SEQRES 40 B 538 ALA SER ASP LEU PRO VAL ALA HIS PHE THR ALA THR ARG SEQRES 41 B 538 ASP GLY SER THR LEU THR LEU PRO ALA TYR GLN ALA ALA SEQRES 42 B 538 PHE MET GLN VAL ALA HET GLC C 1 12 HET GLC C 2 11 HET MG A 600 1 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL B 601 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 MG MG 2+ FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *452(H2 O) HELIX 1 1 TYR A 17 PHE A 21 5 5 HELIX 2 2 ASP A 31 LEU A 45 1 15 HELIX 3 3 THR A 79 LEU A 93 1 15 HELIX 4 4 HIS A 110 ARG A 117 1 8 HELIX 5 5 HIS A 177 GLY A 195 1 19 HELIX 6 6 THR A 203 TYR A 207 5 5 HELIX 7 7 ASN A 233 GLN A 238 5 6 HELIX 8 8 ARG A 246 GLU A 262 1 17 HELIX 9 9 ASN A 276 THR A 285 1 10 HELIX 10 10 SER A 305 LEU A 319 1 15 HELIX 11 11 ARG A 336 TRP A 341 1 6 HELIX 12 12 HIS A 348 LEU A 361 1 14 HELIX 13 13 PRO A 381 ILE A 385 5 5 HELIX 14 14 ASP A 387 LYS A 391 5 5 HELIX 15 15 ARG A 400 ARG A 404 5 5 HELIX 16 16 GLY A 412 PHE A 417 5 6 HELIX 17 17 GLU A 427 LEU A 433 1 7 HELIX 18 18 ALA A 434 GLN A 439 1 6 HELIX 19 19 ALA A 444 SER A 458 1 15 HELIX 20 20 PRO A 460 GLY A 465 1 6 HELIX 21 21 ASP B 31 LEU B 45 1 15 HELIX 22 22 LEU B 80 LEU B 93 1 14 HELIX 23 23 HIS B 110 ARG B 117 1 8 HELIX 24 24 HIS B 177 GLY B 195 1 19 HELIX 25 25 THR B 203 TYR B 207 5 5 HELIX 26 26 ASN B 233 GLN B 238 5 6 HELIX 27 27 PRO B 247 GLU B 262 1 16 HELIX 28 28 ASN B 276 ALA B 286 1 11 HELIX 29 29 GLY B 287 ASP B 289 5 3 HELIX 30 30 SER B 305 LEU B 319 1 15 HELIX 31 31 ALA B 349 PHE B 359 1 11 HELIX 32 32 THR B 445 SER B 458 1 14 HELIX 33 33 PRO B 460 GLY B 465 1 6 SHEET 1 A 8 MET A 293 TYR A 295 0 SHEET 2 A 8 THR A 267 GLN A 271 1 N GLY A 270 O TYR A 295 SHEET 3 A 8 GLY A 198 LEU A 201 1 N LEU A 201 O GLN A 271 SHEET 4 A 8 LYS A 96 GLN A 101 1 N GLN A 101 O ARG A 200 SHEET 5 A 8 GLY A 49 LEU A 52 1 N ILE A 50 O MET A 98 SHEET 6 A 8 VAL A 12 ILE A 16 1 N ILE A 16 O TRP A 51 SHEET 7 A 8 SER A 364 TYR A 368 1 O VAL A 365 N ILE A 13 SHEET 8 A 8 CYS A 326 ALA A 328 1 N TRP A 327 O SER A 364 SHEET 1 B 2 PHE A 56 THR A 57 0 SHEET 2 B 2 ASP A 69 VAL A 73 -1 O ASP A 72 N THR A 57 SHEET 1 C 3 TRP A 130 ALA A 131 0 SHEET 2 C 3 GLN A 160 LEU A 163 -1 O TYR A 161 N ALA A 131 SHEET 3 C 3 TRP A 152 ASP A 155 -1 N THR A 153 O TYR A 162 SHEET 1 D 5 ASP A 466 LEU A 469 0 SHEET 2 D 5 LEU A 477 LYS A 483 -1 O GLN A 482 N ASP A 466 SHEET 3 D 5 GLU A 486 PHE A 492 -1 O CYS A 490 N PHE A 479 SHEET 4 D 5 ALA A 532 VAL A 537 -1 O ALA A 533 N VAL A 491 SHEET 5 D 5 VAL A 507 LEU A 511 -1 N ALA A 508 O GLN A 536 SHEET 1 E 3 GLN A 499 THR A 502 0 SHEET 2 E 3 THR A 524 LEU A 527 -1 O LEU A 525 N THR A 501 SHEET 3 E 3 THR A 519 ASP A 521 -1 N THR A 519 O THR A 526 SHEET 1 F 8 MET B 293 TYR B 295 0 SHEET 2 F 8 THR B 267 GLN B 271 1 N THR B 268 O MET B 293 SHEET 3 F 8 GLY B 198 LEU B 201 1 N LEU B 201 O VAL B 269 SHEET 4 F 8 LYS B 96 GLN B 101 1 N ILE B 99 O ARG B 200 SHEET 5 F 8 GLY B 49 LEU B 52 1 N ILE B 50 O LYS B 96 SHEET 6 F 8 VAL B 12 ILE B 16 1 N TYR B 14 O GLY B 49 SHEET 7 F 8 SER B 364 LEU B 367 1 O VAL B 365 N ILE B 13 SHEET 8 F 8 CYS B 326 ALA B 328 1 N TRP B 327 O SER B 364 SHEET 1 G 3 TRP B 130 ALA B 131 0 SHEET 2 G 3 GLN B 160 LEU B 163 -1 O TYR B 161 N ALA B 131 SHEET 3 G 3 TRP B 152 ASP B 155 -1 N THR B 153 O TYR B 162 SHEET 1 H 5 ASP B 466 LEU B 469 0 SHEET 2 H 5 LEU B 477 LYS B 483 -1 O THR B 480 N SER B 468 SHEET 3 H 5 GLU B 486 PHE B 492 -1 O CYS B 490 N PHE B 479 SHEET 4 H 5 ALA B 532 VAL B 537 -1 O ALA B 533 N VAL B 491 SHEET 5 H 5 VAL B 507 LEU B 511 -1 N ALA B 508 O GLN B 536 SHEET 1 I 3 GLN B 499 THR B 502 0 SHEET 2 I 3 THR B 524 LEU B 527 -1 O LEU B 527 N GLN B 499 SHEET 3 I 3 THR B 519 ASP B 521 -1 N ASP B 521 O THR B 524 LINK O4 GLC C 1 C1 GLC C 2 1555 1555 1.42 LINK OD1 ASP A 23 MG MG A 600 1555 1555 2.36 LINK OD1 ASP A 27 MG MG A 600 1555 1555 2.62 LINK O VAL A 29 MG MG A 600 1555 1555 2.08 LINK OD2 ASP A 31 MG MG A 600 1555 1555 2.37 LINK MG MG A 600 O HOH A 729 1555 1555 2.14 CISPEP 1 TRP A 394 PRO A 395 0 -0.87 CISPEP 2 PHE B 297 ASP B 298 0 4.99 CISPEP 3 LEU B 300 ASN B 301 0 -5.11 CISPEP 4 ASN B 301 MET B 302 0 -8.43 CISPEP 5 HIS B 304 SER B 305 0 -11.50 CISPEP 6 PRO B 442 ASN B 443 0 7.89 CRYST1 111.464 181.062 51.933 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008972 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019256 0.00000