HEADER HYDROLASE 12-SEP-14 3WZ1 TITLE CATALYTIC DOMAIN OF BETA-AGARASE FROM MICROBULBIFER THERMOTOLERANS TITLE 2 JAMB-A94 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGARASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-300; COMPND 5 SYNONYM: BETA-AGARASE; COMPND 6 EC: 3.2.1.81; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MICROBULBIFER THERMOTOLERANS; SOURCE 3 ORGANISM_TAXID: 252514; SOURCE 4 STRAIN: JAMB-A94; SOURCE 5 GENE: AGAA; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ISW1214; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PEXBS KEYWDS GLYCOSIDE HYDROLASE FAMILY 16, BETA-JELLY ROLL FOLD, BETA-AGARASE, KEYWDS 2 AGAROSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.TAKAGI,Y.HATADA,M.AKITA,Y.OHTA,G.YOKOI,T.MIYAZAKI,A.NISHIKAWA, AUTHOR 2 T.TONOZUKA REVDAT 3 08-NOV-23 3WZ1 1 REMARK LINK REVDAT 2 22-APR-15 3WZ1 1 JRNL REVDAT 1 19-NOV-14 3WZ1 0 JRNL AUTH E.TAKAGI,Y.HATADA,M.AKITA,Y.OHTA,G.YOKOI,T.MIYAZAKI, JRNL AUTH 2 A.NISHIKAWA,T.TONOZUKA JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF A GH16 JRNL TITL 2 BETA-AGARASE FROM A DEEP-SEA BACTERIUM, MICROBULBIFER JRNL TITL 3 THERMOTOLERANS JAMB-A94 JRNL REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 79 625 2015 JRNL REFN ISSN 0916-8451 JRNL PMID 25483365 JRNL DOI 10.1080/09168451.2014.988680 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.1580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2355 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2074 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3223 ; 1.462 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4783 ; 3.630 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 283 ; 7.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.976 ;23.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;11.250 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 319 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 591 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 0.722 ; 1.158 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1114 ; 0.717 ; 1.157 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1394 ; 1.191 ; 1.735 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1395 ; 1.190 ; 1.736 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1240 ; 1.040 ; 1.243 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1240 ; 1.038 ; 1.243 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1826 ; 1.600 ; 1.826 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2904 ; 3.687 ;10.361 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2787 ; 3.318 ; 9.850 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000096971. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41972 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 59.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.12400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 18.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4ATF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M TRISODIUM CITRATE, 0.3M AMMONIUM REMARK 280 NITRTATE, 3% ETHANOL, 100MM HEPES, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.81200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.18350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.69700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.18350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.69700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 19 REMARK 465 GLY A 297 REMARK 465 ASN A 298 REMARK 465 ALA A 299 REMARK 465 THR A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 56 -133.70 53.50 REMARK 500 VAL A 150 -65.85 -90.98 REMARK 500 ASP A 236 64.40 -159.62 REMARK 500 ARG A 262 -61.92 -91.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD2 REMARK 620 2 ASP A 46 O 90.6 REMARK 620 3 GLY A 90 O 133.3 93.8 REMARK 620 4 ASP A 285 O 121.0 83.6 105.7 REMARK 620 5 ASP A 285 OD1 94.8 168.2 90.1 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 146 OE2 REMARK 620 2 GLU A 146 OE1 45.5 REMARK 620 3 THR A 244 OG1 120.1 162.1 REMARK 620 4 GLY A 245 O 90.2 72.7 99.6 REMARK 620 5 SER A 247 OG 132.6 92.3 104.8 96.8 REMARK 620 6 HOH A 560 O 99.8 112.3 78.1 169.6 74.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 DBREF 3WZ1 A 19 300 UNP Q6F4N4 Q6F4N4_9ALTE 19 300 SEQRES 1 A 282 TYR ALA ALA ASP TRP ASP GLY VAL PRO VAL PRO ALA ASN SEQRES 2 A 282 PRO GLY SER GLY LYS THR TRP GLU LEU HIS PRO LEU SER SEQRES 3 A 282 ASP ASP PHE ASN TYR GLU ALA PRO ALA ALA GLY LYS SER SEQRES 4 A 282 THR ARG PHE TYR GLU ARG TRP LYS GLU GLY PHE ILE ASN SEQRES 5 A 282 PRO TRP THR GLY PRO GLY LEU THR GLU TRP HIS PRO HIS SEQRES 6 A 282 TYR SER TYR VAL SER GLY GLY LYS LEU ALA ILE THR SER SEQRES 7 A 282 GLY ARG LYS PRO GLY THR ASN GLN VAL TYR LEU GLY SER SEQRES 8 A 282 ILE THR SER LYS ALA PRO LEU THR TYR PRO VAL TYR MET SEQRES 9 A 282 GLU ALA ARG ALA LYS LEU SER ASN MET VAL LEU ALA SER SEQRES 10 A 282 ASP PHE TRP PHE LEU SER ALA ASP SER THR GLU GLU ILE SEQRES 11 A 282 ASP VAL ILE GLU ALA TYR GLY SER ASP ARG PRO GLY GLN SEQRES 12 A 282 GLU TRP TYR ALA GLU ARG LEU HIS LEU SER HIS HIS VAL SEQRES 13 A 282 PHE ILE ARG ASP PRO PHE GLN ASP TYR GLN PRO THR ASP SEQRES 14 A 282 ALA GLY SER TRP TYR ALA ASP GLY LYS GLY THR LYS TRP SEQRES 15 A 282 ARG ASP ALA PHE HIS ARG VAL GLY VAL TYR TRP ARG ASP SEQRES 16 A 282 PRO TRP HIS LEU GLU TYR TYR VAL ASP GLY LYS LEU VAL SEQRES 17 A 282 ARG THR VAL SER GLY GLN ASP ILE ILE ASP PRO ASN GLY SEQRES 18 A 282 PHE THR GLY GLY THR GLY LEU SER LYS PRO MET TYR ALA SEQRES 19 A 282 ILE ILE ASN MET GLU ASP GLN ASN TRP ARG SER ASP ASN SEQRES 20 A 282 GLY ILE THR PRO THR ASP ALA GLU LEU ALA ASP PRO ASN SEQRES 21 A 282 ARG ASN THR TYR TYR VAL ASP TRP VAL ARG PHE TYR LYS SEQRES 22 A 282 PRO VAL PRO ILE ASN GLY ASN ALA THR HET NA A 401 1 HET NA A 402 1 HET GOL A 403 6 HET GOL A 404 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NA 2(NA 1+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *260(H2 O) HELIX 1 1 SER A 57 ARG A 63 1 7 HELIX 2 2 GLN A 161 GLU A 166 1 6 HELIX 3 3 ASP A 187 GLY A 189 5 3 HELIX 4 4 LYS A 199 ALA A 203 5 5 HELIX 5 5 GLY A 231 ASP A 236 1 6 HELIX 6 6 GLN A 259 ASP A 264 1 6 HELIX 7 7 THR A 270 ALA A 275 1 6 SHEET 1 A 4 LYS A 36 LEU A 40 0 SHEET 2 A 4 TYR A 282 PRO A 294 -1 O LYS A 291 N GLU A 39 SHEET 3 A 4 LYS A 91 ILE A 94 -1 N ILE A 94 O TYR A 282 SHEET 4 A 4 SER A 85 SER A 88 -1 N TYR A 86 O ALA A 93 SHEET 1 B 6 LYS A 36 LEU A 40 0 SHEET 2 B 6 TYR A 282 PRO A 294 -1 O LYS A 291 N GLU A 39 SHEET 3 B 6 VAL A 120 LYS A 127 -1 N LYS A 127 O TYR A 283 SHEET 4 B 6 HIS A 205 ASP A 213 -1 O VAL A 209 N MET A 122 SHEET 5 B 6 HIS A 216 VAL A 221 -1 O TYR A 220 N GLY A 208 SHEET 6 B 6 LYS A 224 SER A 230 -1 O ARG A 227 N TYR A 219 SHEET 1 C 7 TRP A 64 GLU A 66 0 SHEET 2 C 7 SER A 109 SER A 112 -1 O THR A 111 N LYS A 65 SHEET 3 C 7 MET A 250 GLU A 257 -1 O ALA A 252 N SER A 112 SHEET 4 C 7 ALA A 134 SER A 141 -1 N TRP A 138 O ILE A 253 SHEET 5 C 7 GLU A 146 TYR A 154 -1 O ILE A 151 N PHE A 137 SHEET 6 C 7 SER A 171 ILE A 176 -1 O HIS A 173 N GLU A 147 SHEET 7 C 7 GLN A 181 TYR A 183 -1 O TYR A 183 N VAL A 174 SHEET 1 D 3 THR A 78 TRP A 80 0 SHEET 2 D 3 VAL A 105 LEU A 107 1 O VAL A 105 N GLU A 79 SHEET 3 D 3 SER A 96 ARG A 98 -1 N GLY A 97 O TYR A 106 SHEET 1 E 2 LEU A 168 HIS A 169 0 SHEET 2 E 2 TRP A 191 TYR A 192 -1 O TYR A 192 N LEU A 168 LINK OD2 ASP A 22 NA NA A 401 1555 1555 2.27 LINK O ASP A 46 NA NA A 401 1555 1555 2.32 LINK O GLY A 90 NA NA A 401 1555 1555 2.31 LINK OE2 GLU A 146 NA NA A 402 1555 1555 2.29 LINK OE1 GLU A 146 NA NA A 402 1555 1555 3.12 LINK OG1 THR A 244 NA NA A 402 1555 1555 2.37 LINK O GLY A 245 NA NA A 402 1555 1555 2.36 LINK OG SER A 247 NA NA A 402 1555 1555 2.36 LINK O ASP A 285 NA NA A 401 1555 1555 2.31 LINK OD1 ASP A 285 NA NA A 401 1555 1555 2.40 LINK NA NA A 402 O HOH A 560 1555 1555 2.61 CISPEP 1 TYR A 118 PRO A 119 0 -8.21 CISPEP 2 ASP A 178 PRO A 179 0 -5.12 SITE 1 AC1 4 ASP A 22 ASP A 46 GLY A 90 ASP A 285 SITE 1 AC2 5 GLU A 146 THR A 244 GLY A 245 SER A 247 SITE 2 AC2 5 HOH A 560 SITE 1 AC3 7 ASN A 31 PRO A 32 LYS A 36 TYR A 210 SITE 2 AC3 7 ASP A 276 HOH A 635 HOH A 712 SITE 1 AC4 7 GLU A 152 TYR A 154 HIS A 169 HIS A 173 SITE 2 AC4 7 GLN A 184 GLN A 259 TRP A 261 CRYST1 49.624 69.394 90.367 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011066 0.00000