HEADER TRANSCRIPTION 25-SEP-14 3WZH TITLE CRYSTAL STRUCTURE OF AFCSX3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN AF_1864; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-104; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 5 GENE: AF_1864; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDONUCLEASE, DEADENYLATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.A.YUAN,X.YAN REVDAT 3 30-OCT-24 3WZH 1 REMARK REVDAT 2 24-AUG-22 3WZH 1 JRNL REMARK SEQADV LINK REVDAT 1 15-JUL-15 3WZH 0 JRNL AUTH X.YAN,W.GUO,Y.A.YUAN JRNL TITL CRYSTAL STRUCTURES OF CRISPR-ASSOCIATED CSX3 REVEAL A JRNL TITL 2 MANGANESE-DEPENDENT DEADENYLATION EXORIBONUCLEASE. JRNL REF RNA BIOL. V. 12 749 2015 JRNL REFN ESSN 1555-8584 JRNL PMID 26106927 JRNL DOI 10.1080/15476286.2015.1051300 REMARK 2 REMARK 2 RESOLUTION. 3.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 7155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.311 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.380 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1633 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1620 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2210 ; 1.799 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3738 ; 1.084 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 196 ; 6.861 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;26.049 ;23.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;15.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.711 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 251 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1764 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 358 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 95 B -1 95 5422 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5784 -13.7428 7.4804 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1636 REMARK 3 T33: 0.0110 T12: -0.0333 REMARK 3 T13: 0.0186 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 3.0778 L22: 7.0931 REMARK 3 L33: 3.8530 L12: 2.1305 REMARK 3 L13: 1.3551 L23: 1.7151 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: 0.1796 S13: -0.1008 REMARK 3 S21: -0.2099 S22: 0.3264 S23: -0.0416 REMARK 3 S31: 0.0448 S32: 0.0678 S33: -0.1488 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -1 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3408 -19.2591 26.0046 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.0698 REMARK 3 T33: 0.0981 T12: 0.0311 REMARK 3 T13: 0.0312 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 4.7129 L22: 4.7328 REMARK 3 L33: 4.5820 L12: 2.2891 REMARK 3 L13: 1.4723 L23: 0.5419 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: 0.0780 S13: -0.5181 REMARK 3 S21: 0.1477 S22: 0.3122 S23: -0.0407 REMARK 3 S31: 0.5980 S32: -0.2419 S33: -0.3316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3WZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-14. REMARK 100 THE DEPOSITION ID IS D_1000096987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7155 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE, PHOSPHATE, AMMONIUM SULPHATE, REMARK 280 PH 4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.01933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.50967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.50967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.01933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 MSE A -4 REMARK 465 ALA A -3 REMARK 465 SER A -2 REMARK 465 LEU A 97 REMARK 465 LYS A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 VAL A 101 REMARK 465 ARG A 102 REMARK 465 HIS A 103 REMARK 465 VAL A 104 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 MSE B -4 REMARK 465 ALA B -3 REMARK 465 SER B -2 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 VAL B 101 REMARK 465 ARG B 102 REMARK 465 HIS B 103 REMARK 465 VAL B 104 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 27 NH2 ARG B 84 5555 1.93 REMARK 500 OE2 GLU A 31 OD2 ASP B 87 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 49 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 19 -64.79 -107.25 REMARK 500 PRO A 63 -19.17 -47.59 REMARK 500 PHE A 64 162.99 179.42 REMARK 500 PRO A 70 -38.78 -35.07 REMARK 500 GLU A 95 72.60 -108.46 REMARK 500 PHE B 64 161.93 179.44 REMARK 500 PRO B 70 -34.38 -39.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WZH RELATED DB: PDB REMARK 900 RELATED ID: 3WZI RELATED DB: PDB DBREF 3WZH A 2 104 UNP O28415 Y1864_ARCFU 2 104 DBREF 3WZH B 2 104 UNP O28415 Y1864_ARCFU 2 104 SEQADV 3WZH GLY A -7 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER A -6 UNP O28415 EXPRESSION TAG SEQADV 3WZH HIS A -5 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE A -4 UNP O28415 EXPRESSION TAG SEQADV 3WZH ALA A -3 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER A -2 UNP O28415 EXPRESSION TAG SEQADV 3WZH ALA A -1 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER A 0 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE A 1 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE A 49 UNP O28415 ILE 49 ENGINEERED MUTATION SEQADV 3WZH MSE A 51 UNP O28415 LEU 51 ENGINEERED MUTATION SEQADV 3WZH GLY B -7 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER B -6 UNP O28415 EXPRESSION TAG SEQADV 3WZH HIS B -5 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE B -4 UNP O28415 EXPRESSION TAG SEQADV 3WZH ALA B -3 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER B -2 UNP O28415 EXPRESSION TAG SEQADV 3WZH ALA B -1 UNP O28415 EXPRESSION TAG SEQADV 3WZH SER B 0 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE B 1 UNP O28415 EXPRESSION TAG SEQADV 3WZH MSE B 49 UNP O28415 ILE 49 ENGINEERED MUTATION SEQADV 3WZH MSE B 51 UNP O28415 LEU 51 ENGINEERED MUTATION SEQRES 1 A 112 GLY SER HIS MSE ALA SER ALA SER MSE LYS PHE ALA VAL SEQRES 2 A 112 ILE ASP ARG LYS ASN PHE THR LEU ILE HIS PHE GLU ILE SEQRES 3 A 112 GLU LYS PRO ILE LYS PRO GLU ILE LEU LYS GLU ILE GLU SEQRES 4 A 112 ILE PRO SER VAL ASP THR ARG LYS GLY VAL VAL ILE SER SEQRES 5 A 112 GLY ARG GLY PRO MSE TRP MSE HIS CYS PHE LEU ALA HIS SEQRES 6 A 112 LYS TYR HIS HIS THR PRO PHE VAL ALA VAL TYR ASP PRO SEQRES 7 A 112 ARG LEU GLY ALA VAL VAL VAL GLN SER HIS SER GLU LEU SEQRES 8 A 112 ARG GLU GLY ASP VAL ILE ASP VAL VAL VAL GLU GLU ILE SEQRES 9 A 112 LEU LYS GLY GLY VAL ARG HIS VAL SEQRES 1 B 112 GLY SER HIS MSE ALA SER ALA SER MSE LYS PHE ALA VAL SEQRES 2 B 112 ILE ASP ARG LYS ASN PHE THR LEU ILE HIS PHE GLU ILE SEQRES 3 B 112 GLU LYS PRO ILE LYS PRO GLU ILE LEU LYS GLU ILE GLU SEQRES 4 B 112 ILE PRO SER VAL ASP THR ARG LYS GLY VAL VAL ILE SER SEQRES 5 B 112 GLY ARG GLY PRO MSE TRP MSE HIS CYS PHE LEU ALA HIS SEQRES 6 B 112 LYS TYR HIS HIS THR PRO PHE VAL ALA VAL TYR ASP PRO SEQRES 7 B 112 ARG LEU GLY ALA VAL VAL VAL GLN SER HIS SER GLU LEU SEQRES 8 B 112 ARG GLU GLY ASP VAL ILE ASP VAL VAL VAL GLU GLU ILE SEQRES 9 B 112 LEU LYS GLY GLY VAL ARG HIS VAL MODRES 3WZH MSE A 1 MET SELENOMETHIONINE MODRES 3WZH MSE A 49 MET SELENOMETHIONINE MODRES 3WZH MSE A 51 MET SELENOMETHIONINE MODRES 3WZH MSE B 1 MET SELENOMETHIONINE MODRES 3WZH MSE B 49 MET SELENOMETHIONINE MODRES 3WZH MSE B 51 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 49 8 HET MSE A 51 8 HET MSE B 1 8 HET MSE B 49 8 HET MSE B 51 8 HET MN A 201 1 HET MN A 202 1 HET MN B 201 1 HET MN B 202 1 HET MN B 203 1 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MN 5(MN 2+) FORMUL 8 HOH *25(H2 O) HELIX 1 1 LYS A 23 GLU A 29 5 7 HELIX 2 2 PRO A 48 TYR A 59 1 12 HELIX 3 3 LYS B 23 GLU B 29 5 7 HELIX 4 4 PRO B 48 TYR B 59 1 12 SHEET 1 A 6 MSE A 1 ARG A 8 0 SHEET 2 A 6 PHE A 11 ILE A 18 -1 O LEU A 13 N ILE A 6 SHEET 3 A 6 GLY A 40 SER A 44 1 O VAL A 42 N ILE A 14 SHEET 4 A 6 VAL A 65 ASP A 69 1 O TYR A 68 N ILE A 43 SHEET 5 A 6 GLY A 73 GLN A 78 -1 O VAL A 75 N VAL A 67 SHEET 6 A 6 VAL A 88 ILE A 89 -1 O ILE A 89 N ALA A 74 SHEET 1 B 6 MSE B 1 ARG B 8 0 SHEET 2 B 6 PHE B 11 ILE B 18 -1 O LEU B 13 N ILE B 6 SHEET 3 B 6 VAL B 41 SER B 44 1 O VAL B 42 N ILE B 14 SHEET 4 B 6 VAL B 65 ASP B 69 1 O TYR B 68 N ILE B 43 SHEET 5 B 6 GLY B 73 GLN B 78 -1 O VAL B 75 N VAL B 67 SHEET 6 B 6 VAL B 88 ILE B 89 -1 O ILE B 89 N ALA B 74 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C PRO A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N TRP A 50 1555 1555 1.33 LINK C TRP A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N HIS A 52 1555 1555 1.32 LINK C SER B 0 N MSE B 1 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.32 LINK C PRO B 48 N MSE B 49 1555 1555 1.33 LINK C MSE B 49 N TRP B 50 1555 1555 1.32 LINK C TRP B 50 N MSE B 51 1555 1555 1.31 LINK C MSE B 51 N HIS B 52 1555 1555 1.33 SITE 1 AC1 3 HIS A 57 LYS A 58 GLU B 85 SITE 1 AC2 1 HIS A 80 SITE 1 AC3 1 ARG B 84 SITE 1 AC4 1 LYS B 58 SITE 1 AC5 1 HIS B 80 CRYST1 86.726 86.726 112.529 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011531 0.006657 0.000000 0.00000 SCALE2 0.000000 0.013314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008887 0.00000