HEADER OXIDOREDUCTASE 08-OCT-14 3WZX TITLE S266A MUTANT 3-ISOPROPYLMALATE DEHYDROGENASE FROM SHEWANELLA TITLE 2 ONEIDENSIS MR-1 AT 0.1MPA - COMPLEX WITH IPM AND MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-ISOPROPYLMALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-IPM-DH, BETA-IPM DEHYDROGENASE, IMDH; COMPND 5 EC: 1.1.1.85; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 GENE: LEUB, SO_4235; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS(DE3) RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE80 KEYWDS 3-ISOPROPYLMALATE DEHYDROGENASE, IPMDH, HIGH-PRESSURE, DIAMOND-ANVIL KEYWDS 2 CELL, DAC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAGAE,N.WATANABE REVDAT 4 08-NOV-23 3WZX 1 REMARK SEQADV LINK REVDAT 3 22-NOV-17 3WZX 1 REMARK REVDAT 2 13-JAN-16 3WZX 1 KEYWDS REVDAT 1 14-OCT-15 3WZX 0 JRNL AUTH Y.HAMAJIMA,T.NAGAE,N.WATANABE,Y.KATO-YAMADA,T.IMAI,C.KATO JRNL TITL PRESSURE ADAPTATION OF 3-ISOPROPYLMALATE DEHYDROGENASE FROM JRNL TITL 2 THE EXTREMELY PIEZOPHILIC BACTERIUM SHEWANELLA BENTHICA IS JRNL TITL 3 ATTRIBUTED TO JUST ONE AMINO ACID SUBSTITUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 32337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1549 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2758 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.476 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2825 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2738 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3813 ; 1.948 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6304 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 5.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;33.004 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;14.741 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.967 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3222 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 620 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1457 ; 2.607 ; 2.363 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1456 ; 2.607 ; 2.362 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1820 ; 3.789 ; 3.527 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3WZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-14. REMARK 100 THE DEPOSITION ID IS D_1000097003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS VII REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3VMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, NACL, NA-HEPES, IPM, MGCL2, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.14950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.41600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.14950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.41600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -67.17886 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.07690 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 128 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 168 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 84 -19.03 -48.32 REMARK 500 ARG A 184 -115.35 -125.02 REMARK 500 VAL A 196 -37.92 -132.13 REMARK 500 ARG A 234 54.35 -144.78 REMARK 500 ASP A 239 -84.53 -120.68 REMARK 500 GLN A 313 77.15 -116.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 249 OD1 REMARK 620 2 IPM A 401 O3 91.0 REMARK 620 3 IPM A 401 O1 98.5 79.0 REMARK 620 4 HOH A 685 O 86.6 88.8 166.9 REMARK 620 5 HOH A 700 O 172.1 88.2 89.1 85.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3WZV RELATED DB: PDB REMARK 900 RELATED ID: 3WZW RELATED DB: PDB REMARK 900 RELATED ID: 3WZY RELATED DB: PDB DBREF 3WZX A 2 364 UNP Q8E9N3 LEU3_SHEON 2 364 SEQADV 3WZX MET A -10 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX ARG A -9 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX GLY A -8 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX SER A -7 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -6 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -5 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -4 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -3 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -2 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX HIS A -1 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX GLY A 0 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX SER A 1 UNP Q8E9N3 EXPRESSION TAG SEQADV 3WZX ALA A 266 UNP Q8E9N3 SER 266 ENGINEERED MUTATION SEQRES 1 A 375 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 375 TYR GLN ILE ALA VAL LEU ALA GLY ASP GLY ILE GLY PRO SEQRES 3 A 375 GLU VAL MET ALA GLU ALA ARG LYS VAL LEU LYS ALA VAL SEQRES 4 A 375 GLU ALA ARG PHE GLY LEU ASN ILE GLU TYR THR GLU TYR SEQRES 5 A 375 ASP VAL GLY GLY ILE ALA ILE ASP ASN HIS GLY CYS PRO SEQRES 6 A 375 LEU PRO GLU ALA THR LEU LYS GLY CYS GLU ALA ALA ASP SEQRES 7 A 375 ALA ILE LEU PHE GLY SER VAL GLY GLY PRO LYS TRP GLU SEQRES 8 A 375 LYS LEU PRO PRO ASN GLU GLN PRO GLU ARG GLY ALA LEU SEQRES 9 A 375 LEU PRO LEU ARG GLY HIS PHE GLU LEU PHE CYS ASN LEU SEQRES 10 A 375 ARG PRO ALA LYS LEU HIS ASP GLY LEU GLU HIS MET SER SEQRES 11 A 375 PRO LEU ARG SER ASP ILE SER ALA ARG GLY PHE ASP VAL SEQRES 12 A 375 LEU CYS VAL ARG GLU LEU THR GLY GLY ILE TYR PHE GLY SEQRES 13 A 375 LYS PRO LYS GLY ARG GLN GLY GLU GLY GLU SER GLU GLU SEQRES 14 A 375 ALA PHE ASP THR MET ARG TYR SER ARG ARG GLU ILE SER SEQRES 15 A 375 ARG ILE ALA ARG ILE ALA PHE GLU ALA ALA ARG GLY ARG SEQRES 16 A 375 ARG LYS LYS VAL THR SER VAL ASP LYS ALA ASN VAL LEU SEQRES 17 A 375 ALA CYS SER VAL LEU TRP ARG GLN VAL VAL GLU GLU VAL SEQRES 18 A 375 ALA VAL ASP PHE PRO ASP VAL GLU LEU GLU HIS ILE TYR SEQRES 19 A 375 ILE ASP ASN ALA THR MET GLN LEU LEU ARG ARG PRO ASP SEQRES 20 A 375 GLU PHE ASP VAL MET LEU CYS SER ASN LEU PHE GLY ASP SEQRES 21 A 375 ILE LEU SER ASP GLU ILE ALA MET LEU THR GLY SER MET SEQRES 22 A 375 GLY LEU LEU ALA SER ALA SER MET ASN SER THR GLY PHE SEQRES 23 A 375 GLY LEU PHE GLU PRO ALA GLY GLY SER ALA PRO ASP ILE SEQRES 24 A 375 ALA GLY LYS GLY ILE ALA ASN PRO ILE ALA GLN ILE LEU SEQRES 25 A 375 SER ALA ALA LEU MET LEU ARG HIS SER LEU LYS GLN GLU SEQRES 26 A 375 GLU ALA ALA SER ALA ILE GLU ARG ALA VAL THR LYS ALA SEQRES 27 A 375 LEU ASN SER GLY TYR LEU THR GLY GLU LEU LEU SER SER SEQRES 28 A 375 ASP GLN ARG HIS LYS ALA LYS THR THR VAL GLN MET GLY SEQRES 29 A 375 ASP PHE ILE ALA ASP ALA VAL LYS ALA GLY VAL HET IPM A 401 12 HET MG A 402 1 HETNAM IPM 3-ISOPROPYLMALIC ACID HETNAM MG MAGNESIUM ION FORMUL 2 IPM C7 H12 O5 FORMUL 3 MG MG 2+ FORMUL 4 HOH *205(H2 O) HELIX 1 1 ILE A 13 GLY A 33 1 21 HELIX 2 2 GLY A 44 GLY A 52 1 9 HELIX 3 3 PRO A 56 ALA A 65 1 10 HELIX 4 4 GLY A 76 GLU A 80 5 5 HELIX 5 5 GLN A 87 GLU A 101 1 15 HELIX 6 6 LEU A 115 SER A 119 5 5 HELIX 7 7 ARG A 122 ALA A 127 1 6 HELIX 8 8 GLU A 153 GLU A 157 5 5 HELIX 9 9 SER A 166 GLY A 183 1 18 HELIX 10 10 LEU A 197 ALA A 211 1 15 HELIX 11 11 VAL A 212 PHE A 214 5 3 HELIX 12 12 ILE A 224 ARG A 234 1 11 HELIX 13 13 PRO A 235 PHE A 238 5 4 HELIX 14 14 SER A 244 GLY A 260 1 17 HELIX 15 15 SER A 261 LEU A 264 5 4 HELIX 16 16 ALA A 285 ALA A 289 5 5 HELIX 17 17 PRO A 296 SER A 310 1 15 HELIX 18 18 GLN A 313 SER A 330 1 18 HELIX 19 19 THR A 334 LEU A 338 5 5 HELIX 20 20 GLN A 342 ALA A 346 5 5 HELIX 21 21 THR A 348 ALA A 362 1 15 SHEET 1 A10 ILE A 36 GLU A 40 0 SHEET 2 A10 TYR A 3 GLY A 10 1 N VAL A 7 O THR A 39 SHEET 3 A10 ALA A 68 SER A 73 1 O GLY A 72 N LEU A 8 SHEET 4 A10 GLY A 276 PRO A 280 1 O PHE A 278 N PHE A 71 SHEET 5 A10 ALA A 266 MET A 270 -1 N SER A 269 O LEU A 277 SHEET 6 A10 CYS A 104 LYS A 110 -1 N LEU A 106 O ALA A 268 SHEET 7 A10 ASP A 131 GLU A 137 -1 O VAL A 132 N ALA A 109 SHEET 8 A10 VAL A 240 CYS A 243 1 O MET A 241 N VAL A 135 SHEET 9 A10 LYS A 187 ASP A 192 1 N THR A 189 O VAL A 240 SHEET 10 A10 GLU A 218 TYR A 223 1 O GLU A 220 N SER A 190 SHEET 1 B 2 GLY A 149 GLN A 151 0 SHEET 2 B 2 GLU A 158 PHE A 160 -1 O GLU A 158 N GLN A 151 LINK OD1 ASP A 249 MG MG A 402 1555 1555 2.01 LINK O3 IPM A 401 MG MG A 402 1555 1555 2.07 LINK O1 IPM A 401 MG MG A 402 1555 1555 2.13 LINK MG MG A 402 O HOH A 685 1555 1555 2.07 LINK MG MG A 402 O HOH A 700 1555 1555 2.14 CISPEP 1 LYS A 146 PRO A 147 0 3.84 SITE 1 AC1 13 GLU A 89 ARG A 97 ARG A 107 ARG A 136 SITE 2 AC1 13 TYR A 143 LYS A 193 ASP A 225 ASP A 249 SITE 3 AC1 13 MG A 402 HOH A 579 HOH A 685 HOH A 686 SITE 4 AC1 13 HOH A 700 SITE 1 AC2 5 ASP A 225 ASP A 249 IPM A 401 HOH A 685 SITE 2 AC2 5 HOH A 700 CRYST1 104.299 58.832 76.663 90.00 118.96 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009588 0.000000 0.005306 0.00000 SCALE2 0.000000 0.016998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014908 0.00000