HEADER APOPTOSIS/IMMUNE SYSTEM 20-JAN-15 3X3F TITLE TRAIL-R2 EXTRACELLULAR REGION COMPLEXED TO A FAB FRAGMENT FROM HUMAN TITLE 2 AGONIST ANTIBODY KMTR2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF KMTR2; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF KMTR2; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 10B; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: UNP RESIDUES 54-184; COMPND 13 SYNONYM: DEATH RECEPTOR 5, TNF-RELATED APOPTOSIS-INDUCING LIGAND COMPND 14 RECEPTOR 2, TRAIL RECEPTOR 2, TRAIL-R2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: DR5, KILLER, TNFRSF10B, TRAILR2, TRICK2, UNQ160/PRO186, SOURCE 16 ZTNFR9; SOURCE 17 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS TRAIL-R2, AGONIST ANTIBODY, APOPTOSIS-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.TAMADA REVDAT 6 30-OCT-24 3X3F 1 REMARK REVDAT 5 08-NOV-23 3X3F 1 HETSYN REVDAT 4 29-JUL-20 3X3F 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 SITE REVDAT 3 17-OCT-18 3X3F 1 JRNL REVDAT 2 30-DEC-15 3X3F 1 REMARK REVDAT 1 23-DEC-15 3X3F 0 JRNL AUTH T.TAMADA,D.SHINMI,M.IKEDA,Y.YONEZAWA,S.KATAOKA,R.KUROKI, JRNL AUTH 2 E.MORI,K.MOTOKI JRNL TITL TRAIL-R2 SUPEROLIGOMERIZATION INDUCED BY HUMAN MONOCLONAL JRNL TITL 2 AGONISTIC ANTIBODY KMTR2 JRNL REF SCI REP V. 5 17936 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26672965 JRNL DOI 10.1038/SREP17936 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 39887 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2406 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.217 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4016 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5458 ; 1.357 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 503 ; 6.551 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;35.196 ;24.049 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;16.665 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.588 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3022 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2024 ; 1.004 ; 2.036 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2523 ; 1.764 ; 3.038 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1992 ; 1.307 ; 2.170 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6235 ; 5.630 ;17.415 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 125 REMARK 3 RESIDUE RANGE : L 1 L 105 REMARK 3 ORIGIN FOR THE GROUP (A): 57.0360 54.9100 26.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0579 REMARK 3 T33: 0.0174 T12: -0.0141 REMARK 3 T13: -0.0019 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.7170 L22: 0.6020 REMARK 3 L33: 1.0705 L12: -0.6195 REMARK 3 L13: 0.0218 L23: -0.0904 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: 0.0231 S13: 0.1395 REMARK 3 S21: -0.0519 S22: -0.0276 S23: -0.0307 REMARK 3 S31: -0.1326 S32: 0.0547 S33: -0.0216 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 126 H 225 REMARK 3 RESIDUE RANGE : L 106 L 214 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8030 55.8100 47.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.0648 REMARK 3 T33: 0.1438 T12: 0.0099 REMARK 3 T13: 0.0649 T23: 0.0581 REMARK 3 L TENSOR REMARK 3 L11: 1.7095 L22: 2.8608 REMARK 3 L33: 1.0759 L12: -0.7706 REMARK 3 L13: -0.0949 L23: -1.2677 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.1572 S13: -0.1742 REMARK 3 S21: 0.3226 S22: 0.1747 S23: 0.5418 REMARK 3 S31: -0.2008 S32: 0.0123 S33: -0.1453 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 72.2380 37.6380 9.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.0835 T22: 0.1640 REMARK 3 T33: 0.0336 T12: 0.0013 REMARK 3 T13: 0.0039 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.3562 L22: 2.1164 REMARK 3 L33: 2.4359 L12: -1.2835 REMARK 3 L13: 0.0711 L23: -0.0912 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: 0.2798 S13: -0.2770 REMARK 3 S21: -0.0066 S22: -0.0916 S23: -0.0123 REMARK 3 S31: 0.2483 S32: 0.0439 S33: 0.0706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3X3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-15. REMARK 100 THE DEPOSITION ID IS D_1000097129. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1HZH FOR FAB, PDB ENTRY 1D4V FOR TRAIL REMARK 200 -R2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5% PEG 3350, 75MM CALCIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.48700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.78150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.52200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.48700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.78150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.52200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.48700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.78150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.52200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.48700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.78150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 32.52200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 517 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG H 142 REMARK 465 SER H 143 REMARK 465 THR H 144 REMARK 465 SER H 145 REMARK 465 LYS H 227 REMARK 465 TYR H 228 REMARK 465 GLY H 229 REMARK 465 ALA A 54 REMARK 465 LEU A 55 REMARK 465 ILE A 56 REMARK 465 THR A 57 REMARK 465 GLN A 58 REMARK 465 GLN A 59 REMARK 465 ASP A 60 REMARK 465 LEU A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 GLN A 64 REMARK 465 GLN A 65 REMARK 465 ARG A 66 REMARK 465 VAL A 67 REMARK 465 ALA A 68 REMARK 465 PRO A 69 REMARK 465 GLN A 70 REMARK 465 GLN A 71 REMARK 465 LYS A 72 REMARK 465 ARG A 73 REMARK 465 ARG A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 ASP A 148 REMARK 465 SER A 149 REMARK 465 PRO A 150 REMARK 465 GLU A 151 REMARK 465 MET A 152 REMARK 465 CYS A 153 REMARK 465 ARG A 154 REMARK 465 LYS A 155 REMARK 465 CYS A 156 REMARK 465 ARG A 157 REMARK 465 THR A 158 REMARK 465 GLY A 159 REMARK 465 CYS A 160 REMARK 465 PRO A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 MET A 164 REMARK 465 VAL A 165 REMARK 465 LYS A 166 REMARK 465 VAL A 167 REMARK 465 GLY A 168 REMARK 465 ASP A 169 REMARK 465 CYS A 170 REMARK 465 THR A 171 REMARK 465 PRO A 172 REMARK 465 TRP A 173 REMARK 465 SER A 174 REMARK 465 ASP A 175 REMARK 465 ILE A 176 REMARK 465 GLU A 177 REMARK 465 CYS A 178 REMARK 465 VAL A 179 REMARK 465 HIS A 180 REMARK 465 LYS A 181 REMARK 465 GLU A 182 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 SER A 185 REMARK 465 ARG A 186 REMARK 465 ALA A 187 REMARK 465 ASP A 188 REMARK 465 TYR A 189 REMARK 465 LYS A 190 REMARK 465 ASP A 191 REMARK 465 ASP A 192 REMARK 465 ASP A 193 REMARK 465 ASP A 194 REMARK 465 LYS A 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 157 63.28 61.73 REMARK 500 SER L 30 -115.13 46.41 REMARK 500 ALA L 51 -44.46 73.54 REMARK 500 SER L 52 14.87 -141.36 REMARK 500 GLU A 140 -174.05 -63.50 REMARK 500 GLU A 141 4.93 -38.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG H 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3X3G RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT BETWEEN SEQRES(VAL,67A) AND DATABASE SEQUENCE (ALA67) REMARK 999 IS DUE TO NATURAL VARIANT. THE SEQUENCES OF THE CHAIN L AND THE REMARK 999 CHAIN H WERE NOT AVAILABLE AT THE UNIPROT KNOWLEDGEBASE DATABASE REMARK 999 (UNIPROTKB) AT THE TIME OF DEPOSITION. DBREF 3X3F A 54 184 UNP O14763 TR10B_HUMAN 54 184 DBREF 3X3F H 1 229 PDB 3X3F 3X3F 1 229 DBREF 3X3F L 1 214 PDB 3X3F 3X3F 1 214 SEQADV 3X3F VAL A 67 UNP O14763 ALA 67 SEE REMARK 999 SEQADV 3X3F SER A 185 UNP O14763 EXPRESSION TAG SEQADV 3X3F ARG A 186 UNP O14763 EXPRESSION TAG SEQADV 3X3F ALA A 187 UNP O14763 EXPRESSION TAG SEQADV 3X3F ASP A 188 UNP O14763 EXPRESSION TAG SEQADV 3X3F TYR A 189 UNP O14763 EXPRESSION TAG SEQADV 3X3F LYS A 190 UNP O14763 EXPRESSION TAG SEQADV 3X3F ASP A 191 UNP O14763 EXPRESSION TAG SEQADV 3X3F ASP A 192 UNP O14763 EXPRESSION TAG SEQADV 3X3F ASP A 193 UNP O14763 EXPRESSION TAG SEQADV 3X3F ASP A 194 UNP O14763 EXPRESSION TAG SEQADV 3X3F LYS A 195 UNP O14763 EXPRESSION TAG SEQRES 1 H 229 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU MET LYS LYS SEQRES 2 H 229 PRO GLY ALA SER VAL LYS VAL SER CYS LYS THR SER GLY SEQRES 3 H 229 TYR THR PHE THR ASN TYR LYS ILE ASN TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP MET ASN SEQRES 5 H 229 PRO ASP THR ASP SER THR GLY TYR PRO GLN LYS PHE GLN SEQRES 6 H 229 GLY ARG VAL THR MET THR ARG ASN THR SER ILE SER THR SEQRES 7 H 229 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG SER TYR GLY SER GLY SER SEQRES 9 H 229 TYR TYR ARG ASP TYR TYR TYR GLY MET ASP VAL TRP GLY SEQRES 10 H 229 GLN GLY THR THR VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 229 GLY PRO SER VAL PHE PRO LEU ALA PRO CYS SER ARG SER SEQRES 12 H 229 THR SER GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 229 THR VAL PRO SER SER SER LEU GLY THR LYS THR TYR THR SEQRES 17 H 229 CYS ASN VAL ASP HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 229 LYS ARG VAL GLU SER LYS TYR GLY SEQRES 1 L 214 GLU ILE VAL LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 214 GLN SER VAL SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 214 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 L 214 SER ASN TRP PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 142 ALA LEU ILE THR GLN GLN ASP LEU ALA PRO GLN GLN ARG SEQRES 2 A 142 VAL ALA PRO GLN GLN LYS ARG SER SER PRO SER GLU GLY SEQRES 3 A 142 LEU CYS PRO PRO GLY HIS HIS ILE SER GLU ASP GLY ARG SEQRES 4 A 142 ASP CYS ILE SER CYS LYS TYR GLY GLN ASP TYR SER THR SEQRES 5 A 142 HIS TRP ASN ASP LEU LEU PHE CYS LEU ARG CYS THR ARG SEQRES 6 A 142 CYS ASP SER GLY GLU VAL GLU LEU SER PRO CYS THR THR SEQRES 7 A 142 THR ARG ASN THR VAL CYS GLN CYS GLU GLU GLY THR PHE SEQRES 8 A 142 ARG GLU GLU ASP SER PRO GLU MET CYS ARG LYS CYS ARG SEQRES 9 A 142 THR GLY CYS PRO ARG GLY MET VAL LYS VAL GLY ASP CYS SEQRES 10 A 142 THR PRO TRP SER ASP ILE GLU CYS VAL HIS LYS GLU SER SEQRES 11 A 142 GLY SER ARG ALA ASP TYR LYS ASP ASP ASP ASP LYS HET NAG H 301 14 HET CL H 302 1 HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET GOL L 304 6 HET GOL L 305 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG C8 H15 N O6 FORMUL 5 CL CL 1- FORMUL 6 GOL 5(C3 H8 O3) FORMUL 11 HOH *276(H2 O) HELIX 1 1 THR H 28 TYR H 32 5 5 HELIX 2 2 PRO H 61 GLN H 65 5 5 HELIX 3 3 THR H 74 ILE H 76 5 3 HELIX 4 4 ARG H 87 THR H 91 5 5 HELIX 5 5 SER H 102 TYR H 106 5 5 HELIX 6 6 SER H 169 ALA H 171 5 3 HELIX 7 7 SER H 200 GLY H 203 5 4 HELIX 8 8 LYS H 214 ASN H 217 5 4 HELIX 9 9 GLU L 79 PHE L 83 5 5 HELIX 10 10 SER L 121 SER L 127 1 7 HELIX 11 11 LYS L 183 LYS L 188 1 6 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 78 LEU H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 A 4 VAL H 68 ASN H 73 -1 N THR H 71 O TYR H 80 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 120 VAL H 124 1 O THR H 123 N LYS H 12 SHEET 3 B 6 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 120 SHEET 4 B 6 LYS H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 B 6 GLU H 46 MET H 51 -1 O MET H 48 N TRP H 36 SHEET 6 B 6 THR H 58 GLY H 59 -1 O GLY H 59 N TRP H 50 SHEET 1 C 4 SER H 133 LEU H 137 0 SHEET 2 C 4 THR H 148 TYR H 158 -1 O LEU H 154 N PHE H 135 SHEET 3 C 4 TYR H 189 PRO H 198 -1 O LEU H 191 N VAL H 155 SHEET 4 C 4 VAL H 176 THR H 178 -1 N HIS H 177 O VAL H 194 SHEET 1 D 4 SER H 133 LEU H 137 0 SHEET 2 D 4 THR H 148 TYR H 158 -1 O LEU H 154 N PHE H 135 SHEET 3 D 4 TYR H 189 PRO H 198 -1 O LEU H 191 N VAL H 155 SHEET 4 D 4 VAL H 182 LEU H 183 -1 N VAL H 182 O SER H 190 SHEET 1 E 3 THR H 164 TRP H 167 0 SHEET 2 E 3 THR H 208 HIS H 213 -1 O ASN H 210 N SER H 166 SHEET 3 E 3 THR H 218 ARG H 223 -1 O VAL H 220 N VAL H 211 SHEET 1 F 4 LEU L 4 THR L 5 0 SHEET 2 F 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 F 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 F 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 G 6 THR L 10 LEU L 13 0 SHEET 2 G 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 G 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 G 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 G 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 G 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 H 4 THR L 10 LEU L 13 0 SHEET 2 H 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 H 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 H 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 I 4 SER L 114 PHE L 118 0 SHEET 2 I 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 I 4 TYR L 173 SER L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 I 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 J 4 ALA L 153 LEU L 154 0 SHEET 2 J 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 J 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 J 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 K 2 HIS A 85 ILE A 87 0 SHEET 2 K 2 CYS A 94 SER A 96 -1 O ILE A 95 N HIS A 86 SHEET 1 L 2 ASP A 102 TYR A 103 0 SHEET 2 L 2 LEU A 114 ARG A 115 -1 O LEU A 114 N TYR A 103 SHEET 1 M 2 GLU A 123 SER A 127 0 SHEET 2 M 2 VAL A 136 CYS A 139 -1 O GLN A 138 N VAL A 124 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.06 SSBOND 2 CYS H 140 CYS L 214 1555 1555 2.03 SSBOND 3 CYS H 153 CYS H 209 1555 1555 2.05 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 5 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 6 CYS A 81 CYS A 94 1555 1555 2.04 SSBOND 7 CYS A 97 CYS A 113 1555 1555 2.04 SSBOND 8 CYS A 116 CYS A 129 1555 1555 2.01 SSBOND 9 CYS A 119 CYS A 137 1555 1555 2.06 CISPEP 1 PHE H 159 PRO H 160 0 -6.76 CISPEP 2 GLU H 161 PRO H 162 0 -3.44 CISPEP 3 SER L 7 PRO L 8 0 5.70 CISPEP 4 TRP L 94 PRO L 95 0 -3.98 CISPEP 5 TYR L 140 PRO L 141 0 3.39 CISPEP 6 THR A 143 PHE A 144 0 0.44 CRYST1 144.974 151.563 65.044 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006898 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015374 0.00000